data_8I7H # _model_server_result.job_id OFS5e9wcG1hf7fXQlQ0k3w _model_server_result.datetime_utc '2025-01-03 07:58:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8i7h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":601}' # _entry.id 8I7H # _exptl.entry_id 8I7H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 190.197 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2,6-DIAMINOPIMELIC ACID' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8I7H _cell.length_a 213.3 _cell.length_b 213.3 _cell.length_c 245.84 _cell.Z_PDB 72 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8I7H _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA hexameric 6 author_and_software_defined_assembly 1 PISA hexameric 6 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,BA,CA,DA 1 1,4 D,U,V,W,X,Y,Z,AA,EA 2 1,2,3,5,6,7 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 106.65 -184.723219 0 3 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 213.3 0 0 4 'crystal symmetry operation' 5_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 5 'crystal symmetry operation' 10_545 y+2/3,x-2/3,-z+1/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 213.3 -123.148812 81.946667 6 'crystal symmetry operation' 11_445 x-y-1/3,-y-2/3,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 -123.148812 81.946667 7 'crystal symmetry operation' 12_555 -x+2/3,-x+y+1/3,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 106.65 61.574406 81.946667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 K N N ? 2 L N N ? 2 P N N ? 2 Q N N ? 2 U N N ? 2 V N N # _chem_comp.formula 'C7 H14 N2 O4' _chem_comp.formula_weight 190.197 _chem_comp.id API _chem_comp.mon_nstd_flag n _chem_comp.name '2,6-DIAMINOPIMELIC ACID' _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C CA API sing 13 n n C O API doub 14 n n C OXT API sing 15 n n CA C3 API sing 16 n n CA N API sing 17 n n CA HA API sing 18 n n C3 C4 API sing 19 n n C3 H31 API sing 20 n n C3 H32 API sing 21 n n C4 C5 API sing 22 n n C4 H41 API sing 23 n n C4 H42 API sing 24 n n C5 C6 API sing 25 n n C5 H51 API sing 26 n n C5 H52 API sing 27 n n C6 C7 API sing 28 n n C6 N6 API sing 29 n n C6 H6 API sing 30 n n C7 O3 API doub 31 n n C7 O4 API sing 32 n n OXT HXT API sing 33 n n O4 HO4 API sing 34 n n N H API sing 35 n n N H2 API sing 36 n n N6 HN61 API sing 37 n n N6 HN62 API sing 38 n n # _atom_sites.entry_id 8I7H _atom_sites.fract_transf_matrix[1][1] 0.004688 _atom_sites.fract_transf_matrix[1][2] 0.002707 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005414 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004068 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 API A 1 600 600 API API . F 2 API A 1 601 601 API API . G 3 SO4 A 1 602 602 SO4 SO4 . H 3 SO4 A 1 603 603 SO4 SO4 . I 3 SO4 A 1 604 604 SO4 SO4 . J 3 SO4 A 1 605 605 SO4 SO4 . K 2 API B 1 600 600 API API . L 2 API B 1 601 601 API API . M 3 SO4 B 1 602 602 SO4 SO4 . N 3 SO4 B 1 603 603 SO4 SO4 . O 3 SO4 B 1 604 604 SO4 SO4 . P 2 API C 1 600 600 API API . Q 2 API C 1 601 601 API API . R 3 SO4 C 1 602 602 SO4 SO4 . S 3 SO4 C 1 603 603 SO4 SO4 . T 3 SO4 C 1 604 604 SO4 SO4 . U 2 API D 1 600 600 API API . V 2 API D 1 601 601 API API . W 3 SO4 D 1 602 602 SO4 SO4 . X 3 SO4 D 1 603 603 SO4 SO4 . Y 3 SO4 D 1 604 604 SO4 SO4 . Z 3 SO4 D 1 605 605 SO4 SO4 . AA 3 SO4 D 1 606 606 SO4 SO4 . BA 4 HOH A 1 1000 1000 HOH HOH . CA 4 HOH B 1 701 1003 HOH HOH . CA 4 HOH B 2 702 1001 HOH HOH . CA 4 HOH B 3 703 1002 HOH HOH . CA 4 HOH B 4 704 1000 HOH HOH . DA 4 HOH C 1 701 1004 HOH HOH . DA 4 HOH C 2 702 1003 HOH HOH . DA 4 HOH C 3 703 1000 HOH HOH . DA 4 HOH C 4 704 1001 HOH HOH . DA 4 HOH C 5 705 1002 HOH HOH . DA 4 HOH C 6 706 1005 HOH HOH . EA 4 HOH D 1 701 1004 HOH HOH . EA 4 HOH D 2 702 1003 HOH HOH . EA 4 HOH D 3 703 1000 HOH HOH . EA 4 HOH D 4 704 1002 HOH HOH . EA 4 HOH D 5 705 1005 HOH HOH . EA 4 HOH D 6 706 1006 HOH HOH . EA 4 HOH D 7 707 1001 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C API . . . V 2 85.668 -50.08 52.143 1 60.22 ? C API 601 D 1 HETATM 2 C CA API . . . V 2 86.553 -49.268 53.073 1 60.87 ? CA API 601 D 1 HETATM 3 C C3 API . . . V 2 87.254 -50.132 54.103 1 62.22 ? C3 API 601 D 1 HETATM 4 C C4 API . . . V 2 88.528 -50.661 53.491 1 69.03 ? C4 API 601 D 1 HETATM 5 C C5 API . . . V 2 89.643 -50.898 54.511 1 72.33 ? C5 API 601 D 1 HETATM 6 C C6 API . . . V 2 89.412 -51.96 55.599 1 68.34 ? C6 API 601 D 1 HETATM 7 C C7 API . . . V 2 90.795 -52.402 56.028 1 70.96 ? C7 API 601 D 1 HETATM 8 O O API . . . V 2 84.92 -49.567 51.289 1 55.87 ? O API 601 D 1 HETATM 9 O OXT API . . . V 2 85.677 -51.306 52.218 1 61.85 ? OXT API 601 D 1 HETATM 10 O O3 API . . . V 2 91.774 -51.625 55.884 1 69.2 ? O3 API 601 D 1 HETATM 11 O O4 API . . . V 2 90.956 -53.538 56.519 1 77.88 ? O4 API 601 D 1 HETATM 12 N N API . . . V 2 85.801 -48.354 53.898 1 63.89 ? N API 601 D 1 HETATM 13 N N6 API . . . V 2 88.588 -53.084 55.151 1 62.43 ? N6 API 601 D 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 13 #