data_8I8D
#
_model_server_result.job_id            fo3hK-BpHJ3hf2AhXDB-nQ 
_model_server_result.datetime_utc      '2024-10-25 20:27:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8i8d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Z","auth_seq_id":101}' 
#
_entry.id    8I8D 
#
_exptl.entry_id    8I8D 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              358.348 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N~3~-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-N-(2-sulfanylethyl)-beta-alaninamide 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8I8D 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8I8D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 Y N N 
? 5 Z N N 
? 5 AA N N 
? 5 BA N N 
? 5 CA N N 
? 5 DA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 M CBC OP3 . A OP3 601 1_555 Z S12 PN7 . a PN7 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.787 ? 
covale ? covale2 O CBC OP3 . B OP3 601 1_555 AA S12 PN7 . b PN7 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.795 ? 
covale ? covale3 Q CBC OP3 . C OP3 601 1_555 BA S12 PN7 . c PN7 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.809 ? 
covale ? covale4 S CBC OP3 . D OP3 601 1_555 CA S12 PN7 . d PN7 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.801 ? 
covale ? covale5 U CBC OP3 . E OP3 601 1_555 DA S12 PN7 . e PN7 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.806 ? 
covale ? covale6 W CBC OP3 . F OP3 601 1_555 Y S12 PN7 . f PN7 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.797 ? 
covale ? covale7 G CB SER 37 f SER 36 1_555 Y O4P PN7 . f PN7 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.383 ? 
covale ? covale8 H CB SER 37 a SER 36 1_555 Z O2P PN7 . a PN7 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.383 ? 
covale ? covale9 I CB SER 37 b SER 36 1_555 AA O4P PN7 . b PN7 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.383 ? 
covale ? covale10 J CB SER 37 c SER 36 1_555 BA O2P PN7 . c PN7 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.383 ? 
covale ? covale11 K CB SER 37 d SER 36 1_555 CA O4P PN7 . d PN7 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.384 ? 
covale ? covale12 L CB SER 37 e SER 36 1_555 DA O2P PN7 . e PN7 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.384 ? 
#
_chem_comp.formula           'C11 H23 N2 O7 P S' 
_chem_comp.formula_weight    358.348 
_chem_comp.id                PN7 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N~3~-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-N-(2-sulfanylethyl)-beta-alaninamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O3 C3 PN7 sing 322 n n 
C3 C4 PN7 sing 323 n n 
C3 C2 PN7 sing 324 n n 
O4 C4 PN7 doub 325 n n 
CE2 C2 PN7 sing 326 n n 
C4 N5 PN7 sing 327 n n 
C1 C2 PN7 sing 328 n n 
C1 O3P PN7 sing 329 n n 
N5 C6 PN7 sing 330 n n 
C2 CE1 PN7 sing 331 n n 
C6 C7 PN7 sing 332 n n 
O2P P PN7 doub 333 n n 
O1P P PN7 sing 334 n n 
C7 C8 PN7 sing 335 n n 
P O3P PN7 sing 336 n n 
O8 C8 PN7 doub 337 n n 
C8 N9 PN7 sing 338 n n 
N9 C10 PN7 sing 339 n n 
S12 C11 PN7 sing 340 n n 
C10 C11 PN7 sing 341 n n 
O3 H1 PN7 sing 342 n n 
C1 H2 PN7 sing 343 n n 
C1 H3 PN7 sing 344 n n 
O1P H4 PN7 sing 345 n n 
CE1 H5 PN7 sing 346 n n 
CE1 H6 PN7 sing 347 n n 
CE1 H7 PN7 sing 348 n n 
CE2 H8 PN7 sing 349 n n 
CE2 H9 PN7 sing 350 n n 
CE2 H10 PN7 sing 351 n n 
C3 H11 PN7 sing 352 n n 
N5 H12 PN7 sing 353 n n 
C6 H13 PN7 sing 354 n n 
C6 H14 PN7 sing 355 n n 
C7 H15 PN7 sing 356 n n 
C7 H16 PN7 sing 357 n n 
N9 H17 PN7 sing 358 n n 
C10 H18 PN7 sing 359 n n 
C10 H19 PN7 sing 360 n n 
C11 H20 PN7 sing 361 n n 
C11 H21 PN7 sing 362 n n 
S12 H22 PN7 sing 363 n n 
P O4P PN7 sing 364 n n 
O4P H23 PN7 sing 365 n n 
#
_atom_sites.entry_id                     8I8D 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 3 OP3 A 1 601 601 OP3 MC7 . 
N 4 AMP A 1 602 701 AMP AMP . 
O 3 OP3 B 1 601 601 OP3 MC7 . 
P 4 AMP B 1 602 701 AMP AMP . 
Q 3 OP3 C 1 601 601 OP3 MC7 . 
R 4 AMP C 1 602 701 AMP AMP . 
S 3 OP3 D 1 601 601 OP3 MC7 . 
T 4 AMP D 1 602 701 AMP AMP . 
U 3 OP3 E 1 601 601 OP3 MC7 . 
V 4 AMP E 1 602 701 AMP AMP . 
W 3 OP3 F 1 601 601 OP3 MC7 . 
X 4 AMP F 1 602 701 AMP AMP . 
Y 5 PN7 f 1 101 101 PN7 PNS . 
Z 5 PN7 a 1 101 101 PN7 PNS . 
AA 5 PN7 b 1 101 101 PN7 PNS . 
BA 5 PN7 c 1 101 101 PN7 PNS . 
CA 5 PN7 d 1 101 101 PN7 PNS . 
DA 5 PN7 e 1 101 101 PN7 PNS . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O3 PN7 . . . Z 5 192.425 114.174 163.498 1 2.42 ? O3 PN7 101 a 1 
HETATM 2 O O4 PN7 . . . Z 5 192.95 116.071 166.155 1 3.03 ? O4 PN7 101 a 1 
HETATM 3 C C2 PN7 . . . Z 5 194.398 115.457 163.139 1 5.05 ? C2 PN7 101 a 1 
HETATM 4 C C1 PN7 . . . Z 5 195.719 114.7 163.248 1 9.95 ? C1 PN7 101 a 1 
HETATM 5 P P PN7 . . . Z 5 196.356 113.007 165.136 1 9.69 ? P PN7 101 a 1 
HETATM 6 O O1P PN7 . . . Z 5 197.075 114.218 165.683 1 3.69 -1 O1P PN7 101 a 1 
HETATM 7 O O2P PN7 . . . Z 5 197.36 111.952 164.739 1 6.94 ? O2P PN7 101 a 1 
HETATM 8 O O3P PN7 . . . Z 5 195.47 113.449 163.819 1 0.7 ? O3P PN7 101 a 1 
HETATM 9 C CE1 PN7 . . . Z 5 194.658 116.943 163.375 1 0.34 ? CE1 PN7 101 a 1 
HETATM 10 C CE2 PN7 . . . Z 5 193.822 115.246 161.741 1 1.98 ? CE2 PN7 101 a 1 
HETATM 11 C C3 PN7 . . . Z 5 193.41 114.907 164.168 1 9.27 ? C3 PN7 101 a 1 
HETATM 12 C C4 PN7 . . . Z 5 192.746 116.016 164.989 1 2.91 ? C4 PN7 101 a 1 
HETATM 13 N N5 PN7 . . . Z 5 191.858 116.995 164.384 1 5.86 ? N5 PN7 101 a 1 
HETATM 14 C C6 PN7 . . . Z 5 191.567 116.98 162.963 1 0.1 ? C6 PN7 101 a 1 
HETATM 15 C C7 PN7 . . . Z 5 191.248 118.388 162.461 1 0.19 ? C7 PN7 101 a 1 
HETATM 16 C C8 PN7 . . . Z 5 189.75 118.664 162.499 1 5.8 ? C8 PN7 101 a 1 
HETATM 17 O O8 PN7 . . . Z 5 189.066 118.063 163.252 1 2.62 ? O8 PN7 101 a 1 
HETATM 18 N N9 PN7 . . . Z 5 189.158 119.651 161.619 1 4.52 ? N9 PN7 101 a 1 
HETATM 19 C C10 PN7 . . . Z 5 187.728 119.885 161.677 1 7.86 ? C10 PN7 101 a 1 
HETATM 20 C C11 PN7 . . . Z 5 187.394 121.324 161.292 1 3.01 ? C11 PN7 101 a 1 
HETATM 21 S S12 PN7 . . . Z 5 187.437 121.541 159.491 1 7.51 ? S12 PN7 101 a 1 
HETATM 22 O O4P PN7 . . . Z 5 195.437 112.449 166.197 1 5.82 ? O4P PN7 101 a 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    51 
_model_server_stats.query_time_ms           264 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           22 
#