data_8I8D
#
_model_server_result.job_id            qLiCTBhbjiltkz2Kta0xPA 
_model_server_result.datetime_utc      '2025-07-03 21:00:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8i8d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"U","auth_seq_id":601}' 
#
_entry.id    8I8D 
#
_exptl.entry_id    8I8D 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              174.194 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '7-methoxy-7-oxidanylidene-heptanoic acid' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8I8D 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8I8D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 M N N 
? 3 O N N 
? 3 Q N N 
? 3 S N N 
? 3 U N N 
? 3 W N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 M CBC OP3 . A OP3 601 1_555 Z S12 PN7 . a PN7 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.787 ? 
covale ? covale2 O CBC OP3 . B OP3 601 1_555 AA S12 PN7 . b PN7 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.795 ? 
covale ? covale3 Q CBC OP3 . C OP3 601 1_555 BA S12 PN7 . c PN7 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.809 ? 
covale ? covale4 S CBC OP3 . D OP3 601 1_555 CA S12 PN7 . d PN7 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.801 ? 
covale ? covale5 U CBC OP3 . E OP3 601 1_555 DA S12 PN7 . e PN7 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.806 ? 
covale ? covale6 W CBC OP3 . F OP3 601 1_555 Y S12 PN7 . f PN7 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.797 ? 
covale ? covale7 G CB SER 37 f SER 36 1_555 Y O4P PN7 . f PN7 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.383 ? 
covale ? covale8 H CB SER 37 a SER 36 1_555 Z O2P PN7 . a PN7 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.383 ? 
covale ? covale9 I CB SER 37 b SER 36 1_555 AA O4P PN7 . b PN7 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.383 ? 
covale ? covale10 J CB SER 37 c SER 36 1_555 BA O2P PN7 . c PN7 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.383 ? 
covale ? covale11 K CB SER 37 d SER 36 1_555 CA O4P PN7 . d PN7 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.384 ? 
covale ? covale12 L CB SER 37 e SER 36 1_555 DA O2P PN7 . e PN7 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.384 ? 
#
_chem_comp.formula           'C8 H14 O4' 
_chem_comp.formula_weight    174.194 
_chem_comp.id                OP3 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '7-methoxy-7-oxidanylidene-heptanoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O25 CBC OP3 doub 274 n n 
CBC CAT OP3 sing 275 n n 
OAE CBB OP3 doub 276 n n 
CAN CAT OP3 sing 277 n n 
CAN CAL OP3 sing 278 n n 
CAM CAL OP3 sing 279 n n 
CAM CAR OP3 sing 280 n n 
CAA OAX OP3 sing 281 n n 
CBB CAR OP3 sing 282 n n 
CBB OAX OP3 sing 283 n n 
CBC O1 OP3 sing 284 n n 
CAA H1 OP3 sing 285 n n 
CAA H2 OP3 sing 286 n n 
CAA H3 OP3 sing 287 n n 
CAL H4 OP3 sing 288 n n 
CAL H5 OP3 sing 289 n n 
CAM H6 OP3 sing 290 n n 
CAM H7 OP3 sing 291 n n 
CAN H8 OP3 sing 292 n n 
CAN H9 OP3 sing 293 n n 
CAR H10 OP3 sing 294 n n 
CAR H11 OP3 sing 295 n n 
CAT H12 OP3 sing 296 n n 
CAT H13 OP3 sing 297 n n 
O1 H14 OP3 sing 298 n n 
#
_atom_sites.entry_id                     8I8D 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 3 OP3 A 1 601 601 OP3 MC7 . 
N 4 AMP A 1 602 701 AMP AMP . 
O 3 OP3 B 1 601 601 OP3 MC7 . 
P 4 AMP B 1 602 701 AMP AMP . 
Q 3 OP3 C 1 601 601 OP3 MC7 . 
R 4 AMP C 1 602 701 AMP AMP . 
S 3 OP3 D 1 601 601 OP3 MC7 . 
T 4 AMP D 1 602 701 AMP AMP . 
U 3 OP3 E 1 601 601 OP3 MC7 . 
V 4 AMP E 1 602 701 AMP AMP . 
W 3 OP3 F 1 601 601 OP3 MC7 . 
X 4 AMP F 1 602 701 AMP AMP . 
Y 5 PN7 f 1 101 101 PN7 PNS . 
Z 5 PN7 a 1 101 101 PN7 PNS . 
AA 5 PN7 b 1 101 101 PN7 PNS . 
BA 5 PN7 c 1 101 101 PN7 PNS . 
CA 5 PN7 d 1 101 101 PN7 PNS . 
DA 5 PN7 e 1 101 101 PN7 PNS . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA OP3 . . . U 3 191.549 197.422 157.17 1 44.48 ? CAA OP3 601 E 1 
HETATM 2 C CAL OP3 . . . U 3 185.727 199.535 157.333 1 49.79 ? CAL OP3 601 E 1 
HETATM 3 C CAM OP3 . . . U 3 187.243 199.623 157.495 1 48.93 ? CAM OP3 601 E 1 
HETATM 4 C CAN OP3 . . . U 3 184.982 200.342 158.393 1 49.67 ? CAN OP3 601 E 1 
HETATM 5 C CAR OP3 . . . U 3 187.904 198.249 157.54 1 44.37 ? CAR OP3 601 E 1 
HETATM 6 C CAT OP3 . . . U 3 185.054 201.848 158.142 1 53.27 ? CAT OP3 601 E 1 
HETATM 7 O OAE OP3 . . . U 3 189.933 199.366 157.164 1 49.52 ? OAE OP3 601 E 1 
HETATM 8 O OAX OP3 . . . U 3 190.191 197.171 157.387 1 49.02 ? OAX OP3 601 E 1 
HETATM 9 C CBB OP3 . . . U 3 189.413 198.324 157.348 1 47.65 ? CBB OP3 601 E 1 
HETATM 10 C CBC OP3 . . . U 3 184.559 202.665 159.333 1 56.81 ? CBC OP3 601 E 1 
HETATM 11 O O25 OP3 . . . U 3 183.903 201.788 160.207 1 57.26 ? O25 OP3 601 E 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    38 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           11 
#