data_8I8E # _model_server_result.job_id e_iMsxPfn1AnTbUFUanqcg _model_server_result.datetime_utc '2025-02-05 16:02:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8i8e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"W","auth_seq_id":701}' # _entry.id 8I8E # _exptl.entry_id 8I8E _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 347.221 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8I8E _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8I8E _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 M N N ? 3 O N N ? 3 R N N ? 3 S N N ? 3 U N N ? 3 W N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASP 36 f ASP 35 1_555 A N 4HH 37 f 4HH 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 A C 4HH 37 f 4HH 36 1_555 A N LEU 38 f LEU 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale3 A SU 4HH 37 f 4HH 36 1_555 Q C1 OLA . F OLA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.837 ? covale ? covale4 N C1 OLA . D OLA 702 1_555 K SU 4HH 37 d 4HH 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.876 ? covale ? covale5 P C1 OLA . A OLA 702 1_555 H SU 4HH 37 a 4HH 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? covale ? covale6 T C1 OLA . B OLA 702 1_555 I SU 4HH 37 b 4HH 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.794 ? covale ? covale7 V C1 OLA . C OLA 702 1_555 J SU 4HH 37 c 4HH 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.795 ? covale ? covale8 X C1 OLA . E OLA 702 1_555 L SU 4HH 37 e 4HH 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.84 ? covale ? covale9 H C ASP 36 a ASP 35 1_555 H N 4HH 37 a 4HH 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale10 H C 4HH 37 a 4HH 36 1_555 H N LEU 38 a LEU 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale11 I C ASP 36 b ASP 35 1_555 I N 4HH 37 b 4HH 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale12 I C 4HH 37 b 4HH 36 1_555 I N LEU 38 b LEU 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale13 J C ASP 36 c ASP 35 1_555 J N 4HH 37 c 4HH 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale14 J C 4HH 37 c 4HH 36 1_555 J N LEU 38 c LEU 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale15 K C ASP 36 d ASP 35 1_555 K N 4HH 37 d 4HH 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale16 K C 4HH 37 d 4HH 36 1_555 K N LEU 38 d LEU 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale17 L C ASP 36 e ASP 35 1_555 L N 4HH 37 e 4HH 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale18 L C 4HH 37 e 4HH 36 1_555 L N LEU 38 e LEU 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 68 n n P O2P AMP sing 69 n n P O3P AMP sing 70 n n P O5' AMP sing 71 n n O2P HOP2 AMP sing 72 n n O3P HOP3 AMP sing 73 n n O5' C5' AMP sing 74 n n C5' C4' AMP sing 75 n n C5' "H5'1" AMP sing 76 n n C5' "H5'2" AMP sing 77 n n C4' O4' AMP sing 78 n n C4' C3' AMP sing 79 n n C4' H4' AMP sing 80 n n O4' C1' AMP sing 81 n n C3' O3' AMP sing 82 n n C3' C2' AMP sing 83 n n C3' H3' AMP sing 84 n n O3' HO3' AMP sing 85 n n C2' O2' AMP sing 86 n n C2' C1' AMP sing 87 n n C2' H2' AMP sing 88 n n O2' HO2' AMP sing 89 n n C1' N9 AMP sing 90 n n C1' H1' AMP sing 91 n n N9 C8 AMP sing 92 n y N9 C4 AMP sing 93 n y C8 N7 AMP doub 94 n y C8 H8 AMP sing 95 n n N7 C5 AMP sing 96 n y C5 C6 AMP sing 97 n y C5 C4 AMP doub 98 n y C6 N6 AMP sing 99 n n C6 N1 AMP doub 100 n y N6 HN61 AMP sing 101 n n N6 HN62 AMP sing 102 n n N1 C2 AMP sing 103 n y C2 N3 AMP doub 104 n y C2 H2 AMP sing 105 n n N3 C4 AMP sing 106 n y # _atom_sites.entry_id 8I8E _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 3 AMP D 1 701 701 AMP AMP . N 4 OLA D 1 702 801 OLA OLA . O 3 AMP A 1 701 701 AMP AMP . P 4 OLA A 1 702 801 OLA OLA . Q 4 OLA F 1 601 801 OLA OLA . R 3 AMP F 1 602 701 AMP AMP . S 3 AMP B 1 701 701 AMP AMP . T 4 OLA B 1 702 801 OLA OLA . U 3 AMP C 1 701 701 AMP AMP . V 4 OLA C 1 702 801 OLA OLA . W 3 AMP E 1 701 701 AMP AMP . X 4 OLA E 1 702 801 OLA OLA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . W 3 180.896 200.611 156.105 1 74.82 ? P AMP 701 E 1 HETATM 2 O O1P AMP . . . W 3 179.985 199.423 155.844 1 50.72 ? O1P AMP 701 E 1 HETATM 3 O O2P AMP . . . W 3 180.076 201.779 156.644 1 56.76 ? O2P AMP 701 E 1 HETATM 4 O O3P AMP . . . W 3 181.917 200.239 157.115 1 52.9 ? O3P AMP 701 E 1 HETATM 5 O O5' AMP . . . W 3 181.657 201.072 154.659 1 54.8 ? O5' AMP 701 E 1 HETATM 6 C C5' AMP . . . W 3 183.008 200.82 154.496 1 49.86 ? C5' AMP 701 E 1 HETATM 7 C C4' AMP . . . W 3 183.475 201.477 153.179 1 52.74 ? C4' AMP 701 E 1 HETATM 8 O O4' AMP . . . W 3 184.598 202.188 153.384 1 52.52 ? O4' AMP 701 E 1 HETATM 9 C C3' AMP . . . W 3 183.859 200.365 152.104 1 55.52 ? C3' AMP 701 E 1 HETATM 10 O O3' AMP . . . W 3 182.686 199.931 151.39 1 54.41 ? O3' AMP 701 E 1 HETATM 11 C C2' AMP . . . W 3 184.729 200.947 151.26 1 54.5 ? C2' AMP 701 E 1 HETATM 12 O O2' AMP . . . W 3 184.024 201.522 150.098 1 51.2 ? O2' AMP 701 E 1 HETATM 13 C C1' AMP . . . W 3 185.406 202.073 152.076 1 53 ? C1' AMP 701 E 1 HETATM 14 N N9 AMP . . . W 3 186.693 201.758 152.332 1 55.29 ? N9 AMP 701 E 1 HETATM 15 C C8 AMP . . . W 3 187.138 201.077 153.37 1 52.32 ? C8 AMP 701 E 1 HETATM 16 N N7 AMP . . . W 3 188.46 200.964 153.287 1 52.38 ? N7 AMP 701 E 1 HETATM 17 C C5 AMP . . . W 3 188.861 201.577 152.183 1 52.87 ? C5 AMP 701 E 1 HETATM 18 C C6 AMP . . . W 3 190.08 201.783 151.591 1 52.7 ? C6 AMP 701 E 1 HETATM 19 N N6 AMP . . . W 3 191.311 201.269 152.196 1 49.25 ? N6 AMP 701 E 1 HETATM 20 N N1 AMP . . . W 3 190.108 202.467 150.444 1 56.17 ? N1 AMP 701 E 1 HETATM 21 C C2 AMP . . . W 3 189.03 202.93 149.897 1 53.89 ? C2 AMP 701 E 1 HETATM 22 N N3 AMP . . . W 3 187.842 202.746 150.45 1 51.81 ? N3 AMP 701 E 1 HETATM 23 C C4 AMP . . . W 3 187.728 202.088 151.57 1 51.64 ? C4 AMP 701 E 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #