data_8I8G # _model_server_result.job_id UiAZKTsvGCRWLJvWK8aODA _model_server_result.datetime_utc '2024-11-22 15:46:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8i8g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 8I8G # _exptl.entry_id 8I8G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8I8G _cell.length_a 82.288 _cell.length_b 87.074 _cell.length_c 87.951 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8I8G _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C KBE 1 D KBE 1 1_555 C NG DPP 2 D DPP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale2 C C DPP 2 D DPP 2 1_555 C N UAL 3 D UAL 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale3 C N DPP 2 D DPP 2 1_555 C C SER 6 D SER 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale4 C C UAL 3 D UAL 3 1_555 C N MYN 4 D MYN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.47 ? covale ? covale5 C C MYN 4 D MYN 4 1_555 C NG DPP 5 D DPP 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale6 C C DPP 5 D DPP 5 1_555 C N SER 6 D SER 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 8I8G _atom_sites.fract_transf_matrix[1][1] 0.012152 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011484 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01137 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 ATP A 1 401 401 ATP ATP . E 4 HOH B 1 301 6 HOH HOH . E 4 HOH B 2 302 30 HOH HOH . E 4 HOH B 3 303 17 HOH HOH . E 4 HOH B 4 304 34 HOH HOH . E 4 HOH B 5 305 4 HOH HOH . E 4 HOH B 6 306 15 HOH HOH . E 4 HOH B 7 307 2 HOH HOH . E 4 HOH B 8 308 33 HOH HOH . E 4 HOH B 9 309 18 HOH HOH . E 4 HOH B 10 310 24 HOH HOH . E 4 HOH B 11 311 11 HOH HOH . F 4 HOH A 1 501 12 HOH HOH . F 4 HOH A 2 502 1 HOH HOH . F 4 HOH A 3 503 27 HOH HOH . F 4 HOH A 4 504 16 HOH HOH . F 4 HOH A 5 505 29 HOH HOH . F 4 HOH A 6 506 14 HOH HOH . F 4 HOH A 7 507 22 HOH HOH . F 4 HOH A 8 508 8 HOH HOH . F 4 HOH A 9 509 32 HOH HOH . F 4 HOH A 10 510 19 HOH HOH . F 4 HOH A 11 511 7 HOH HOH . F 4 HOH A 12 512 31 HOH HOH . F 4 HOH A 13 513 26 HOH HOH . F 4 HOH A 14 514 25 HOH HOH . F 4 HOH A 15 515 21 HOH HOH . F 4 HOH A 16 516 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . D 3 -34.509 8.732 4.643 1 109.4 ? PG ATP 401 A 1 HETATM 2 O O1G ATP . . . D 3 -33.348 7.815 4.357 1 106.59 ? O1G ATP 401 A 1 HETATM 3 O O2G ATP . . . D 3 -35.006 9.44 3.407 1 109.61 ? O2G ATP 401 A 1 HETATM 4 O O3G ATP . . . D 3 -34.239 9.677 5.789 1 108.59 ? O3G ATP 401 A 1 HETATM 5 P PB ATP . . . D 3 -35.961 6.872 6.424 1 109.84 ? PB ATP 401 A 1 HETATM 6 O O1B ATP . . . D 3 -37.011 7.523 7.263 1 109.9 ? O1B ATP 401 A 1 HETATM 7 O O2B ATP . . . D 3 -36.139 5.454 5.99 1 109.53 ? O2B ATP 401 A 1 HETATM 8 O O3B ATP . . . D 3 -35.717 7.776 5.124 1 109.58 ? O3B ATP 401 A 1 HETATM 9 P PA ATP . . . D 3 -33.807 6.027 8.211 1 108.89 ? PA ATP 401 A 1 HETATM 10 O O1A ATP . . . D 3 -32.707 5.319 7.49 1 108.34 ? O1A ATP 401 A 1 HETATM 11 O O2A ATP . . . D 3 -34.833 5.2 8.91 1 107.89 ? O2A ATP 401 A 1 HETATM 12 O O3A ATP . . . D 3 -34.554 7.002 7.178 1 109.71 ? O3A ATP 401 A 1 HETATM 13 O O5' ATP . . . D 3 -33.185 7.085 9.247 1 107.74 ? O5' ATP 401 A 1 HETATM 14 C C5' ATP . . . D 3 -31.831 6.91 9.744 1 105.66 ? C5' ATP 401 A 1 HETATM 15 C C4' ATP . . . D 3 -31.862 6.241 11.097 1 103.99 ? C4' ATP 401 A 1 HETATM 16 O O4' ATP . . . D 3 -32.778 5.118 11.069 1 102.27 ? O4' ATP 401 A 1 HETATM 17 C C3' ATP . . . D 3 -30.534 5.641 11.569 1 103.08 ? C3' ATP 401 A 1 HETATM 18 O O3' ATP . . . D 3 -29.737 6.617 12.23 1 103.1 ? O3' ATP 401 A 1 HETATM 19 C C2' ATP . . . D 3 -30.996 4.537 12.523 1 102.16 ? C2' ATP 401 A 1 HETATM 20 O O2' ATP . . . D 3 -31.215 5.015 13.832 1 101.73 ? O2' ATP 401 A 1 HETATM 21 C C1' ATP . . . D 3 -32.303 4.066 11.883 1 101.15 ? C1' ATP 401 A 1 HETATM 22 N N9 ATP . . . D 3 -32.181 2.86 11.052 1 99.51 ? N9 ATP 401 A 1 HETATM 23 C C8 ATP . . . D 3 -32.635 2.674 9.764 1 98.13 ? C8 ATP 401 A 1 HETATM 24 N N7 ATP . . . D 3 -32.374 1.471 9.306 1 97.28 ? N7 ATP 401 A 1 HETATM 25 C C5 ATP . . . D 3 -31.72 0.829 10.35 1 97.45 ? C5 ATP 401 A 1 HETATM 26 C C6 ATP . . . D 3 -31.186 -0.468 10.487 1 96.86 ? C6 ATP 401 A 1 HETATM 27 N N6 ATP . . . D 3 -31.229 -1.391 9.53 1 96.64 ? N6 ATP 401 A 1 HETATM 28 N N1 ATP . . . D 3 -30.598 -0.779 11.667 1 97.13 ? N1 ATP 401 A 1 HETATM 29 C C2 ATP . . . D 3 -30.557 0.154 12.628 1 97.41 ? C2 ATP 401 A 1 HETATM 30 N N3 ATP . . . D 3 -31.026 1.4 12.612 1 98.05 ? N3 ATP 401 A 1 HETATM 31 C C4 ATP . . . D 3 -31.603 1.677 11.431 1 98.35 ? C4 ATP 401 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #