data_8I96 # _model_server_result.job_id VIBFmcA_HGNdIFLH5MMiGw _model_server_result.datetime_utc '2024-12-19 18:59:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8i96 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":901}' # _entry.id 8I96 # _exptl.entry_id 8I96 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 434.488 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1S,3R)-5-[4-(8-nitroquinolin-5-yl)piperazin-1-yl]carbonyladamantan-2-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8I96 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8I96 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 14 B CYS 36 1_555 A SG CYS 29 B CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 76 B CYS 98 1_555 A SG CYS 453 B CYS 475 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 78 B CYS 100 1_555 A SG CYS 90 B CYS 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 161 B CYS 183 1_555 A SG CYS 167 B CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 A SG CYS 241 B CYS 263 1_555 A SG CYS 248 B CYS 270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 A SG CYS 469 B CYS 491 1_555 A SG CYS 499 B CYS 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 A SG CYS 765 B CYS 787 1_555 A SG CYS 792 B CYS 814 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf8 A SG CYS 767 B CYS 789 1_555 A SG CYS 811 B CYS 833 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf9 B SG CYS 14 A CYS 36 1_555 B SG CYS 29 A CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf10 B SG CYS 76 A CYS 98 1_555 B SG CYS 453 A CYS 475 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf11 B SG CYS 78 A CYS 100 1_555 B SG CYS 90 A CYS 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf12 B SG CYS 161 A CYS 183 1_555 B SG CYS 167 A CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf13 B SG CYS 241 A CYS 263 1_555 B SG CYS 248 A CYS 270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf14 B SG CYS 469 A CYS 491 1_555 B SG CYS 499 A CYS 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf15 B SG CYS 765 A CYS 787 1_555 B SG CYS 792 A CYS 814 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf16 B SG CYS 767 A CYS 789 1_555 B SG CYS 811 A CYS 833 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C24 H26 N4 O4' _chem_comp.formula_weight 434.488 _chem_comp.id GJX _chem_comp.mon_nstd_flag . _chem_comp.name (1S,3R)-5-[4-(8-nitroquinolin-5-yl)piperazin-1-yl]carbonyladamantan-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C2 GJX doub 83 n y N C5 GJX sing 84 n y C C1 GJX sing 85 n y C C7 GJX doub 86 n y O C13 GJX doub 87 n n C1 C8 GJX doub 88 n y C10 C12 GJX sing 89 n n C10 N2 GJX sing 90 n n C11 C9 GJX sing 91 n n C11 N3 GJX sing 92 n n C12 N3 GJX sing 93 n n C13 C14 GJX sing 94 n n C13 N3 GJX sing 95 n n C14 C15 GJX sing 96 n n C14 C16 GJX sing 97 n n C14 C23 GJX sing 98 n n C15 C18 GJX sing 99 n n C16 C17 GJX sing 100 n n C17 C19 GJX sing 101 n n C17 C22 GJX sing 102 n n C18 C20 GJX sing 103 n n C18 C22 GJX sing 104 n n C19 C21 GJX sing 105 n n C2 C3 GJX sing 106 n y C2 C7 GJX sing 107 n y C20 C21 GJX sing 108 n n C20 O1 GJX doub 109 n n C21 C23 GJX sing 110 n n C3 C4 GJX doub 111 n y C3 C8 GJX sing 112 n y C4 C6 GJX sing 113 n y C5 C6 GJX doub 114 n y C7 N1 GJX sing 115 n n C8 N2 GJX sing 116 n n C9 N2 GJX sing 117 n n N1 O2 GJX doub 118 n n N1 O3 GJX sing 119 n n C H1 GJX sing 120 n n C1 H2 GJX sing 121 n n C10 H3 GJX sing 122 n n C10 H4 GJX sing 123 n n C11 H5 GJX sing 124 n n C11 H6 GJX sing 125 n n C12 H7 GJX sing 126 n n C12 H8 GJX sing 127 n n C15 H9 GJX sing 128 n n C15 H10 GJX sing 129 n n C16 H11 GJX sing 130 n n C16 H12 GJX sing 131 n n C17 H13 GJX sing 132 n n C18 H14 GJX sing 133 n n C19 H15 GJX sing 134 n n C19 H16 GJX sing 135 n n C21 H17 GJX sing 136 n n C22 H18 GJX sing 137 n n C22 H19 GJX sing 138 n n C23 H20 GJX sing 139 n n C23 H21 GJX sing 140 n n C4 H22 GJX sing 141 n n C5 H23 GJX sing 142 n n C6 H24 GJX sing 143 n n C9 H25 GJX sing 144 n n C9 H26 GJX sing 145 n n # _atom_sites.entry_id 8I96 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GJX B 1 901 901 GJX sdf . D 2 GJX A 1 901 901 GJX sdf . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N GJX . . . D 2 121.188 131.381 130.56 1 3.61 ? N GJX 901 A 1 HETATM 2 C C GJX . . . D 2 121.665 131.449 126.869 1 3.61 ? C GJX 901 A 1 HETATM 3 O O GJX . . . D 2 115.422 130.284 123.707 1 3.61 ? O GJX 901 A 1 HETATM 4 C C1 GJX . . . D 2 120.53 130.759 126.441 1 3.61 ? C1 GJX 901 A 1 HETATM 5 C C10 GJX . . . D 2 118.67 128.264 126.203 1 3.61 ? C10 GJX 901 A 1 HETATM 6 C C11 GJX . . . D 2 116.23 129.126 126.152 1 3.61 ? C11 GJX 901 A 1 HETATM 7 C C12 GJX . . . D 2 118.181 128.457 124.773 1 3.61 ? C12 GJX 901 A 1 HETATM 8 C C13 GJX . . . D 2 116.049 129.238 123.744 1 3.61 ? C13 GJX 901 A 1 HETATM 9 C C14 GJX . . . D 2 115.947 128.312 122.551 1 3.61 ? C14 GJX 901 A 1 HETATM 10 C C15 GJX . . . D 2 117.129 128.51 121.561 1 3.61 ? C15 GJX 901 A 1 HETATM 11 C C16 GJX . . . D 2 114.646 128.66 121.768 1 3.61 ? C16 GJX 901 A 1 HETATM 12 C C17 GJX . . . D 2 114.397 127.789 120.501 1 3.61 ? C17 GJX 901 A 1 HETATM 13 C C18 GJX . . . D 2 116.617 127.562 120.535 1 3.61 ? C18 GJX 901 A 1 HETATM 14 C C19 GJX . . . D 2 114.283 126.312 120.963 1 3.61 ? C19 GJX 901 A 1 HETATM 15 C C2 GJX . . . D 2 120.976 131.182 129.243 1 3.61 ? C2 GJX 901 A 1 HETATM 16 C C20 GJX . . . D 2 116.787 126.145 120.775 1 3.61 ? C20 GJX 901 A 1 HETATM 17 C C21 GJX . . . D 2 115.618 126.288 121.62 1 3.61 ? C21 GJX 901 A 1 HETATM 18 C C22 GJX . . . D 2 115.598 127.992 119.54 1 3.61 ? C22 GJX 901 A 1 HETATM 19 C C23 GJX . . . D 2 115.801 126.824 122.995 1 3.61 ? C23 GJX 901 A 1 HETATM 20 C C3 GJX . . . D 2 119.773 130.451 128.789 1 3.61 ? C3 GJX 901 A 1 HETATM 21 C C4 GJX . . . D 2 118.884 129.983 129.745 1 3.61 ? C4 GJX 901 A 1 HETATM 22 C C5 GJX . . . D 2 120.313 130.92 131.464 1 3.61 ? C5 GJX 901 A 1 HETATM 23 C C6 GJX . . . D 2 119.166 130.226 131.085 1 3.61 ? C6 GJX 901 A 1 HETATM 24 C C7 GJX . . . D 2 121.928 131.679 128.216 1 3.61 ? C7 GJX 901 A 1 HETATM 25 C C8 GJX . . . D 2 119.579 130.255 127.324 1 3.61 ? C8 GJX 901 A 1 HETATM 26 C C9 GJX . . . D 2 117.134 130.151 126.833 1 3.61 ? C9 GJX 901 A 1 HETATM 27 N N1 GJX . . . D 2 123.079 132.375 128.601 1 3.61 ? N1 GJX 901 A 1 HETATM 28 N N2 GJX . . . D 2 118.471 129.571 126.805 1 3.61 ? N2 GJX 901 A 1 HETATM 29 N N3 GJX . . . D 2 116.794 128.936 124.819 1 3.61 ? N3 GJX 901 A 1 HETATM 30 O O1 GJX . . . D 2 117.551 125.257 120.433 1 3.61 ? O1 GJX 901 A 1 HETATM 31 O O2 GJX . . . D 2 123.88 132.982 127.64 1 3.61 ? O2 GJX 901 A 1 HETATM 32 O O3 GJX . . . D 2 123.425 132.453 129.946 1 3.61 ? O3 GJX 901 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 32 #