data_8I9I # _model_server_result.job_id mUKAE43WjYFXlvB6Y4kXrA _model_server_result.datetime_utc '2024-12-30 17:21:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8i9i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 8I9I # _exptl.entry_id 8I9I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 147.129 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'GLUTAMIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.69 _cell.angle_gamma 90 _cell.entry_id 8I9I _cell.length_a 211.51 _cell.length_b 61.29 _cell.length_c 101.9 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8I9I _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 98 A CYS 98 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc2 A SG CYS 100 A CYS 100 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc3 A OH TYR 121 A TYR 121 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc4 A SG CYS 125 A CYS 125 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc5 B SG CYS 98 B CYS 98 1_555 F ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc6 B SG CYS 100 B CYS 100 1_555 F ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc7 B OH TYR 121 B TYR 121 1_555 F ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc8 B SG CYS 125 B CYS 125 1_555 F ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? # _chem_comp.formula 'C5 H9 N O4' _chem_comp.formula_weight 147.129 _chem_comp.id GLU _chem_comp.mon_nstd_flag y _chem_comp.name 'GLUTAMIC ACID' _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA GLU sing 102 n n N H GLU sing 103 n n N H2 GLU sing 104 n n CA C GLU sing 105 n n CA CB GLU sing 106 n n CA HA GLU sing 107 n n C O GLU doub 108 n n C OXT GLU sing 109 n n CB CG GLU sing 110 n n CB HB2 GLU sing 111 n n CB HB3 GLU sing 112 n n CG CD GLU sing 113 n n CG HG2 GLU sing 114 n n CG HG3 GLU sing 115 n n CD OE1 GLU doub 116 n n CD OE2 GLU sing 117 n n OE2 HE2 GLU sing 118 n n OXT HXT GLU sing 119 n n # _atom_sites.entry_id 8I9I _atom_sites.fract_transf_matrix[1][1] 0.004728 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000555 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016316 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009881 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GLU A 1 501 501 GLU GLU . D 3 ZN A 1 502 601 ZN ZN . E 2 GLU B 1 501 501 GLU GLU . F 3 ZN B 1 502 601 ZN ZN . G 4 HOH A 1 601 767 HOH HOH . G 4 HOH A 2 602 710 HOH HOH . G 4 HOH A 3 603 735 HOH HOH . G 4 HOH A 4 604 702 HOH HOH . G 4 HOH A 5 605 722 HOH HOH . G 4 HOH A 6 606 765 HOH HOH . G 4 HOH A 7 607 764 HOH HOH . G 4 HOH A 8 608 757 HOH HOH . G 4 HOH A 9 609 720 HOH HOH . G 4 HOH A 10 610 748 HOH HOH . G 4 HOH A 11 611 704 HOH HOH . G 4 HOH A 12 612 708 HOH HOH . G 4 HOH A 13 613 721 HOH HOH . G 4 HOH A 14 614 701 HOH HOH . G 4 HOH A 15 615 729 HOH HOH . G 4 HOH A 16 616 715 HOH HOH . G 4 HOH A 17 617 749 HOH HOH . G 4 HOH A 18 618 723 HOH HOH . G 4 HOH A 19 619 713 HOH HOH . G 4 HOH A 20 620 781 HOH HOH . G 4 HOH A 21 621 786 HOH HOH . G 4 HOH A 22 622 740 HOH HOH . G 4 HOH A 23 623 744 HOH HOH . G 4 HOH A 24 624 713 HOH HOH . G 4 HOH A 25 625 706 HOH HOH . G 4 HOH A 26 626 753 HOH HOH . G 4 HOH A 27 627 709 HOH HOH . G 4 HOH A 28 628 700 HOH HOH . G 4 HOH A 29 629 772 HOH HOH . G 4 HOH A 30 630 705 HOH HOH . G 4 HOH A 31 631 707 HOH HOH . G 4 HOH A 32 632 728 HOH HOH . G 4 HOH A 33 633 726 HOH HOH . G 4 HOH A 34 634 731 HOH HOH . G 4 HOH A 35 635 747 HOH HOH . G 4 HOH A 36 636 761 HOH HOH . G 4 HOH A 37 637 771 HOH HOH . G 4 HOH A 38 638 789 HOH HOH . G 4 HOH A 39 639 741 HOH HOH . G 4 HOH A 40 640 759 HOH HOH . G 4 HOH A 41 641 774 HOH HOH . G 4 HOH A 42 642 725 HOH HOH . G 4 HOH A 43 643 783 HOH HOH . G 4 HOH A 44 644 736 HOH HOH . G 4 HOH A 45 645 758 HOH HOH . G 4 HOH A 46 646 795 HOH HOH . G 4 HOH A 47 647 716 HOH HOH . G 4 HOH A 48 648 751 HOH HOH . G 4 HOH A 49 649 739 HOH HOH . G 4 HOH A 50 650 773 HOH HOH . G 4 HOH A 51 651 733 HOH HOH . G 4 HOH A 52 652 724 HOH HOH . G 4 HOH A 53 653 756 HOH HOH . G 4 HOH A 54 654 710 HOH HOH . G 4 HOH A 55 655 793 HOH HOH . G 4 HOH A 56 656 766 HOH HOH . G 4 HOH A 57 657 760 HOH HOH . G 4 HOH A 58 658 745 HOH HOH . G 4 HOH A 59 659 703 HOH HOH . G 4 HOH A 60 660 778 HOH HOH . G 4 HOH A 61 661 754 HOH HOH . G 4 HOH A 62 662 748 HOH HOH . G 4 HOH A 63 663 752 HOH HOH . G 4 HOH A 64 664 719 HOH HOH . G 4 HOH A 65 665 796 HOH HOH . G 4 HOH A 66 666 742 HOH HOH . G 4 HOH A 67 667 726 HOH HOH . G 4 HOH A 68 668 776 HOH HOH . G 4 HOH A 69 669 747 HOH HOH . G 4 HOH A 70 670 785 HOH HOH . G 4 HOH A 71 671 737 HOH HOH . G 4 HOH A 72 672 791 HOH HOH . G 4 HOH A 73 673 794 HOH HOH . G 4 HOH A 74 674 788 HOH HOH . G 4 HOH A 75 675 719 HOH HOH . G 4 HOH A 76 676 734 HOH HOH . G 4 HOH A 77 677 743 HOH HOH . G 4 HOH A 78 678 777 HOH HOH . G 4 HOH A 79 679 763 HOH HOH . G 4 HOH A 80 680 780 HOH HOH . G 4 HOH A 81 681 784 HOH HOH . G 4 HOH A 82 682 714 HOH HOH . G 4 HOH A 83 683 769 HOH HOH . G 4 HOH A 84 684 746 HOH HOH . G 4 HOH A 85 685 718 HOH HOH . G 4 HOH A 86 686 768 HOH HOH . G 4 HOH A 87 687 727 HOH HOH . G 4 HOH A 88 688 755 HOH HOH . G 4 HOH A 89 689 751 HOH HOH . G 4 HOH A 90 690 790 HOH HOH . G 4 HOH A 91 691 770 HOH HOH . G 4 HOH A 92 692 750 HOH HOH . H 4 HOH B 1 601 773 HOH HOH . H 4 HOH B 2 602 782 HOH HOH . H 4 HOH B 3 603 730 HOH HOH . H 4 HOH B 4 604 771 HOH HOH . H 4 HOH B 5 605 761 HOH HOH . H 4 HOH B 6 606 704 HOH HOH . H 4 HOH B 7 607 718 HOH HOH . H 4 HOH B 8 608 766 HOH HOH . H 4 HOH B 9 609 735 HOH HOH . H 4 HOH B 10 610 709 HOH HOH . H 4 HOH B 11 611 708 HOH HOH . H 4 HOH B 12 612 724 HOH HOH . H 4 HOH B 13 613 787 HOH HOH . H 4 HOH B 14 614 701 HOH HOH . H 4 HOH B 15 615 702 HOH HOH . H 4 HOH B 16 616 762 HOH HOH . H 4 HOH B 17 617 712 HOH HOH . H 4 HOH B 18 618 714 HOH HOH . H 4 HOH B 19 619 745 HOH HOH . H 4 HOH B 20 620 738 HOH HOH . H 4 HOH B 21 621 767 HOH HOH . H 4 HOH B 22 622 739 HOH HOH . H 4 HOH B 23 623 763 HOH HOH . H 4 HOH B 24 624 706 HOH HOH . H 4 HOH B 25 625 737 HOH HOH . H 4 HOH B 26 626 705 HOH HOH . H 4 HOH B 27 627 717 HOH HOH . H 4 HOH B 28 628 734 HOH HOH . H 4 HOH B 29 629 716 HOH HOH . H 4 HOH B 30 630 711 HOH HOH . H 4 HOH B 31 631 743 HOH HOH . H 4 HOH B 32 632 703 HOH HOH . H 4 HOH B 33 633 725 HOH HOH . H 4 HOH B 34 634 720 HOH HOH . H 4 HOH B 35 635 731 HOH HOH . H 4 HOH B 36 636 740 HOH HOH . H 4 HOH B 37 637 741 HOH HOH . H 4 HOH B 38 638 744 HOH HOH . H 4 HOH B 39 639 711 HOH HOH . H 4 HOH B 40 640 738 HOH HOH . H 4 HOH B 41 641 733 HOH HOH . H 4 HOH B 42 642 732 HOH HOH . H 4 HOH B 43 643 764 HOH HOH . H 4 HOH B 44 644 730 HOH HOH . H 4 HOH B 45 645 750 HOH HOH . H 4 HOH B 46 646 752 HOH HOH . H 4 HOH B 47 647 729 HOH HOH . H 4 HOH B 48 648 746 HOH HOH . H 4 HOH B 49 649 700 HOH HOH . H 4 HOH B 50 650 722 HOH HOH . H 4 HOH B 51 651 760 HOH HOH . H 4 HOH B 52 652 755 HOH HOH . H 4 HOH B 53 653 762 HOH HOH . H 4 HOH B 54 654 727 HOH HOH . H 4 HOH B 55 655 753 HOH HOH . H 4 HOH B 56 656 768 HOH HOH . H 4 HOH B 57 657 742 HOH HOH . H 4 HOH B 58 658 732 HOH HOH . H 4 HOH B 59 659 759 HOH HOH . H 4 HOH B 60 660 779 HOH HOH . H 4 HOH B 61 661 717 HOH HOH . H 4 HOH B 62 662 758 HOH HOH . H 4 HOH B 63 663 754 HOH HOH . H 4 HOH B 64 664 723 HOH HOH . H 4 HOH B 65 665 772 HOH HOH . H 4 HOH B 66 666 736 HOH HOH . H 4 HOH B 67 667 792 HOH HOH . H 4 HOH B 68 668 728 HOH HOH . H 4 HOH B 69 669 712 HOH HOH . H 4 HOH B 70 670 757 HOH HOH . H 4 HOH B 71 671 707 HOH HOH . H 4 HOH B 72 672 749 HOH HOH . H 4 HOH B 73 673 770 HOH HOH . H 4 HOH B 74 674 775 HOH HOH . H 4 HOH B 75 675 715 HOH HOH . H 4 HOH B 76 676 765 HOH HOH . H 4 HOH B 77 677 756 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N GLU . . . C 2 -8.966 -2.292 16.847 1 43.67 ? N GLU 501 A 1 HETATM 2 C CA GLU . . . C 2 -9.039 -0.839 16.94 1 44.02 ? CA GLU 501 A 1 HETATM 3 C C GLU . . . C 2 -7.724 -0.252 17.442 1 44.27 ? C GLU 501 A 1 HETATM 4 O O GLU . . . C 2 -7.475 0.945 17.309 1 44.89 ? O GLU 501 A 1 HETATM 5 C CB GLU . . . C 2 -10.189 -0.418 17.857 1 44.29 ? CB GLU 501 A 1 HETATM 6 C CG GLU . . . C 2 -11.562 -0.827 17.351 1 44.23 ? CG GLU 501 A 1 HETATM 7 C CD GLU . . . C 2 -12.685 -0.338 18.243 1 44.59 ? CD GLU 501 A 1 HETATM 8 O OE1 GLU . . . C 2 -13.814 -0.163 17.737 1 44.69 ? OE1 GLU 501 A 1 HETATM 9 O OE2 GLU . . . C 2 -12.439 -0.127 19.449 1 44.8 ? OE2 GLU 501 A 1 HETATM 10 O OXT GLU . . . C 2 -6.879 -0.959 17.991 1 44.04 ? OXT GLU 501 A 1 # _model_server_stats.io_time_ms 96 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 240 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 10 #