data_8IA5 # _model_server_result.job_id yX_p1Dzzl4u0nlsYOrdaug _model_server_result.datetime_utc '2025-01-10 21:41:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ia5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 8IA5 # _exptl.entry_id 8IA5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 581.49 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-({(4S,5R)-4,5-bis(4-chlorophenyl)-2-[4-methoxy-2-(propan-2-yloxy)phenyl]-4,5-dihydro-1H-imidazol-1-yl}carbonyl)piperazin-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8IA5 _cell.length_a 47.08 _cell.length_b 47.08 _cell.length_c 90.45 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8IA5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C30 H30 Cl2 N4 O4' _chem_comp.formula_weight 581.49 _chem_comp.id NUT _chem_comp.mon_nstd_flag . _chem_comp.name 4-({(4S,5R)-4,5-bis(4-chlorophenyl)-2-[4-methoxy-2-(propan-2-yloxy)phenyl]-4,5-dihydro-1H-imidazol-1-yl}carbonyl)piperazin-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Nutlin 3a' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C28 NUT doub 237 n n C28 C29 NUT sing 238 n n C28 N3 NUT sing 239 n n C29 N2 NUT sing 240 n n O3 C25 NUT doub 241 n n N3 C27 NUT sing 242 n n C25 N2 NUT sing 243 n n C25 N1 NUT sing 244 n n N2 C26 NUT sing 245 n n C27 C26 NUT sing 246 n n C11 C18 NUT sing 247 n n C11 N NUT sing 248 n n C11 C12 NUT sing 249 n n C3 C2 NUT doub 250 n y C3 C9 NUT sing 251 n y N1 C18 NUT sing 252 n n N1 C10 NUT sing 253 n n C2 C1 NUT sing 254 n y C17 C12 NUT doub 255 n y C17 C16 NUT sing 256 n y C18 C19 NUT sing 257 n n C10 N NUT doub 258 n n C10 C9 NUT sing 259 n n C9 C5 NUT doub 260 n y C O NUT sing 261 n n C12 C13 NUT sing 262 n y C1 O NUT sing 263 n n C1 C4 NUT doub 264 n y C16 C15 NUT doub 265 n y C5 C4 NUT sing 266 n y C5 O1 NUT sing 267 n n C8 C6 NUT sing 268 n n O1 C6 NUT sing 269 n n C19 C24 NUT doub 270 n y C19 C20 NUT sing 271 n y C24 C23 NUT sing 272 n y C13 C14 NUT doub 273 n y C15 C14 NUT sing 274 n y C15 CL NUT sing 275 n n C6 C7 NUT sing 276 n n C20 C21 NUT doub 277 n y C23 C22 NUT doub 278 n y C21 C22 NUT sing 279 n y C22 CL1 NUT sing 280 n n C29 H1 NUT sing 281 n n C29 H2 NUT sing 282 n n N3 H3 NUT sing 283 n n C27 H4 NUT sing 284 n n C27 H5 NUT sing 285 n n C26 H6 NUT sing 286 n n C26 H7 NUT sing 287 n n C3 H9 NUT sing 288 n n C2 H10 NUT sing 289 n n C6 H11 NUT sing 290 n n C8 H12 NUT sing 291 n n C8 H13 NUT sing 292 n n C8 H14 NUT sing 293 n n C7 H15 NUT sing 294 n n C7 H16 NUT sing 295 n n C7 H17 NUT sing 296 n n C4 H18 NUT sing 297 n n C H19 NUT sing 298 n n C H20 NUT sing 299 n n C H21 NUT sing 300 n n C18 H22 NUT sing 301 n n C24 H23 NUT sing 302 n n C23 H24 NUT sing 303 n n C21 H25 NUT sing 304 n n C20 H26 NUT sing 305 n n C11 H27 NUT sing 306 n n C17 H30 NUT sing 307 n n C16 H31 NUT sing 308 n n C14 H32 NUT sing 309 n n C13 H33 NUT sing 310 n n # _atom_sites.entry_id 8IA5 _atom_sites.fract_transf_matrix[1][1] 0.02124 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02124 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011056 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NUT A 1 201 1 NUT NUT . D 4 O4B A 1 202 2 O4B O4B . E 5 HOH A 1 301 10 HOH HOH . E 5 HOH A 2 302 42 HOH HOH . E 5 HOH A 3 303 50 HOH HOH . E 5 HOH A 4 304 39 HOH HOH . E 5 HOH A 5 305 59 HOH HOH . E 5 HOH A 6 306 24 HOH HOH . E 5 HOH A 7 307 55 HOH HOH . E 5 HOH A 8 308 54 HOH HOH . E 5 HOH A 9 309 58 HOH HOH . E 5 HOH A 10 310 19 HOH HOH . E 5 HOH A 11 311 46 HOH HOH . E 5 HOH A 12 312 45 HOH HOH . E 5 HOH A 13 313 29 HOH HOH . E 5 HOH A 14 314 1 HOH HOH . E 5 HOH A 15 315 32 HOH HOH . E 5 HOH A 16 316 4 HOH HOH . E 5 HOH A 17 317 15 HOH HOH . E 5 HOH A 18 318 31 HOH HOH . E 5 HOH A 19 319 56 HOH HOH . E 5 HOH A 20 320 25 HOH HOH . E 5 HOH A 21 321 5 HOH HOH . E 5 HOH A 22 322 33 HOH HOH . E 5 HOH A 23 323 18 HOH HOH . E 5 HOH A 24 324 49 HOH HOH . E 5 HOH A 25 325 36 HOH HOH . E 5 HOH A 26 326 6 HOH HOH . E 5 HOH A 27 327 23 HOH HOH . E 5 HOH A 28 328 22 HOH HOH . E 5 HOH A 29 329 9 HOH HOH . E 5 HOH A 30 330 57 HOH HOH . E 5 HOH A 31 331 43 HOH HOH . E 5 HOH A 32 332 16 HOH HOH . E 5 HOH A 33 333 2 HOH HOH . E 5 HOH A 34 334 53 HOH HOH . E 5 HOH A 35 335 7 HOH HOH . E 5 HOH A 36 336 20 HOH HOH . E 5 HOH A 37 337 41 HOH HOH . E 5 HOH A 38 338 51 HOH HOH . E 5 HOH A 39 339 34 HOH HOH . E 5 HOH A 40 340 44 HOH HOH . E 5 HOH A 41 341 48 HOH HOH . E 5 HOH A 42 342 35 HOH HOH . E 5 HOH A 43 343 37 HOH HOH . E 5 HOH A 44 344 11 HOH HOH . E 5 HOH A 45 345 62 HOH HOH . E 5 HOH A 46 346 12 HOH HOH . E 5 HOH A 47 347 28 HOH HOH . E 5 HOH A 48 348 30 HOH HOH . E 5 HOH A 49 349 8 HOH HOH . E 5 HOH A 50 350 40 HOH HOH . E 5 HOH A 51 351 61 HOH HOH . E 5 HOH A 52 352 52 HOH HOH . E 5 HOH A 53 353 47 HOH HOH . E 5 HOH A 54 354 27 HOH HOH . F 5 HOH B 1 101 3 HOH HOH . F 5 HOH B 2 102 13 HOH HOH . F 5 HOH B 3 103 38 HOH HOH . F 5 HOH B 4 104 21 HOH HOH . F 5 HOH B 5 105 17 HOH HOH . F 5 HOH B 6 106 14 HOH HOH . F 5 HOH B 7 107 26 HOH HOH . F 5 HOH B 8 108 60 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3 NUT . . . C 3 8.818 -13.6 -4.794 1 49.53 0 O3 NUT 201 A 1 HETATM 2 C C25 NUT . . . C 3 8.775 -14.479 -5.634 1 53.72 0 C25 NUT 201 A 1 HETATM 3 N N2 NUT . . . C 3 8.178 -14.295 -6.846 1 64.58 0 N2 NUT 201 A 1 HETATM 4 C C29 NUT . . . C 3 7.972 -12.936 -7.334 1 72.19 0 C29 NUT 201 A 1 HETATM 5 C C28 NUT . . . C 3 6.546 -12.531 -7.165 1 79.41 0 C28 NUT 201 A 1 HETATM 6 O O2 NUT . . . C 3 6.287 -11.315 -7.048 1 83.39 0 O2 NUT 201 A 1 HETATM 7 N N3 NUT . . . C 3 5.623 -13.485 -7.119 1 76.3 0 N3 NUT 201 A 1 HETATM 8 C C27 NUT . . . C 3 5.809 -14.905 -7.399 1 72.39 0 C27 NUT 201 A 1 HETATM 9 C C26 NUT . . . C 3 7.288 -15.306 -7.457 1 67.92 0 C26 NUT 201 A 1 HETATM 10 N N1 NUT . . . C 3 9.384 -15.694 -5.327 1 49.65 0 N1 NUT 201 A 1 HETATM 11 C C10 NUT . . . C 3 9.969 -16.634 -6.188 1 45.16 0 C10 NUT 201 A 1 HETATM 12 C C9 NUT . . . C 3 10.173 -16.452 -7.633 1 48.57 0 C9 NUT 201 A 1 HETATM 13 C C3 NUT . . . C 3 9.999 -17.537 -8.489 1 52.36 0 C3 NUT 201 A 1 HETATM 14 C C2 NUT . . . C 3 10.202 -17.398 -9.846 1 52.11 0 C2 NUT 201 A 1 HETATM 15 C C5 NUT . . . C 3 10.643 -15.248 -8.148 1 49.87 0 C5 NUT 201 A 1 HETATM 16 O O1 NUT . . . C 3 10.853 -14.252 -7.237 1 51.21 0 O1 NUT 201 A 1 HETATM 17 C C6 NUT . . . C 3 11.433 -12.951 -7.529 1 46.75 0 C6 NUT 201 A 1 HETATM 18 C C8 NUT . . . C 3 12.92 -13.112 -7.737 1 45.08 0 C8 NUT 201 A 1 HETATM 19 C C7 NUT . . . C 3 11.134 -12.09 -6.331 1 48.01 0 C7 NUT 201 A 1 HETATM 20 C C4 NUT . . . C 3 10.867 -15.1 -9.513 1 54.26 0 C4 NUT 201 A 1 HETATM 21 C C1 NUT . . . C 3 10.638 -16.181 -10.357 1 57.1 0 C1 NUT 201 A 1 HETATM 22 O O NUT . . . C 3 10.886 -15.972 -11.684 1 60.64 0 O NUT 201 A 1 HETATM 23 C C NUT . . . C 3 10.724 -17.056 -12.598 1 62.45 0 C NUT 201 A 1 HETATM 24 C C18 NUT . . . C 3 9.675 -16.057 -3.953 1 45.95 0 C18 NUT 201 A 1 HETATM 25 C C19 NUT . . . C 3 10.834 -15.346 -3.285 1 43.54 0 C19 NUT 201 A 1 HETATM 26 C C24 NUT . . . C 3 10.863 -15.208 -1.906 1 45.57 0 C24 NUT 201 A 1 HETATM 27 C C23 NUT . . . C 3 11.932 -14.588 -1.27 1 44.49 0 C23 NUT 201 A 1 HETATM 28 C C22 NUT . . . C 3 12.999 -14.172 -2.015 1 39.76 0 C22 NUT 201 A 1 HETATM 29 CL CL1 NUT . . . C 3 14.354 -13.404 -1.225 1 42.77 0 CL1 NUT 201 A 1 HETATM 30 C C21 NUT . . . C 3 12.991 -14.282 -3.39 1 41.63 0 C21 NUT 201 A 1 HETATM 31 C C20 NUT . . . C 3 11.925 -14.9 -4.013 1 45.4 0 C20 NUT 201 A 1 HETATM 32 C C11 NUT . . . C 3 9.917 -17.58 -4.165 1 45.78 0 C11 NUT 201 A 1 HETATM 33 N N NUT . . . C 3 10.343 -17.69 -5.57 1 45.26 0 N NUT 201 A 1 HETATM 34 C C12 NUT . . . C 3 10.902 -18.207 -3.207 1 45.35 0 C12 NUT 201 A 1 HETATM 35 C C17 NUT . . . C 3 10.528 -18.485 -1.91 1 42.4 0 C17 NUT 201 A 1 HETATM 36 C C16 NUT . . . C 3 11.411 -19.053 -1.016 1 47.82 0 C16 NUT 201 A 1 HETATM 37 C C15 NUT . . . C 3 12.691 -19.317 -1.429 1 51.26 0 C15 NUT 201 A 1 HETATM 38 CL CL NUT . . . C 3 13.806 -20.023 -0.301 1 48.74 0 CL NUT 201 A 1 HETATM 39 C C14 NUT . . . C 3 13.105 -19.042 -2.709 1 52.42 0 C14 NUT 201 A 1 HETATM 40 C C13 NUT . . . C 3 12.207 -18.474 -3.593 1 49.73 0 C13 NUT 201 A 1 HETATM 41 H H1 NUT . . . C 3 8.533 -12.305 -6.837 1 71.32 0 H1 NUT 201 A 1 HETATM 42 H H2 NUT . . . C 3 8.208 -12.878 -8.285 1 72 0 H2 NUT 201 A 1 HETATM 43 H H3 NUT . . . C 3 4.84 -13.238 -6.903 1 76.12 0 H3 NUT 201 A 1 HETATM 44 H H4 NUT . . . C 3 5.377 -15.113 -8.264 1 72.26 0 H4 NUT 201 A 1 HETATM 45 H H5 NUT . . . C 3 5.353 -15.435 -6.695 1 72.26 0 H5 NUT 201 A 1 HETATM 46 H H6 NUT . . . C 3 7.401 -16.154 -6.987 1 68.07 0 H6 NUT 201 A 1 HETATM 47 H H7 NUT . . . C 3 7.551 -15.442 -8.387 1 68.54 0 H7 NUT 201 A 1 HETATM 48 H H9 NUT . . . C 3 9.689 -18.358 -8.146 1 51.84 0 H9 NUT 201 A 1 HETATM 49 H H10 NUT . . . C 3 10.049 -18.127 -10.42 1 53.39 0 H10 NUT 201 A 1 HETATM 50 H H11 NUT . . . C 3 11.011 -12.56 -8.344 1 47.68 0 H11 NUT 201 A 1 HETATM 51 H H12 NUT . . . C 3 13.327 -12.238 -7.876 1 45.6 0 H12 NUT 201 A 1 HETATM 52 H H13 NUT . . . C 3 13.081 -13.671 -8.518 1 45.63 0 H13 NUT 201 A 1 HETATM 53 H H14 NUT . . . C 3 13.315 -13.532 -6.953 1 45.59 0 H14 NUT 201 A 1 HETATM 54 H H15 NUT . . . C 3 11.044 -12.652 -5.541 1 47.86 0 H15 NUT 201 A 1 HETATM 55 H H16 NUT . . . C 3 10.306 -11.603 -6.475 1 48.24 0 H16 NUT 201 A 1 HETATM 56 H H17 NUT . . . C 3 11.861 -11.459 -6.192 1 48.02 0 H17 NUT 201 A 1 HETATM 57 H H18 NUT . . . C 3 11.168 -14.284 -9.866 1 53.69 0 H18 NUT 201 A 1 HETATM 58 H H19 NUT . . . C 3 9.777 -17.224 -12.731 1 61.92 0 H19 NUT 201 A 1 HETATM 59 H H20 NUT . . . C 3 11.146 -17.852 -12.248 1 62.01 0 H20 NUT 201 A 1 HETATM 60 H H21 NUT . . . C 3 11.131 -16.823 -13.448 1 61.92 0 H21 NUT 201 A 1 HETATM 61 H H22 NUT . . . C 3 8.868 -15.93 -3.405 1 46.2 0 H22 NUT 201 A 1 HETATM 62 H H23 NUT . . . C 3 10.14 -15.519 -1.394 1 44.79 0 H23 NUT 201 A 1 HETATM 63 H H24 NUT . . . C 3 11.942 -14.501 -0.335 1 43.6 0 H24 NUT 201 A 1 HETATM 64 H H25 NUT . . . C 3 13.727 -13.986 -3.893 1 42.09 0 H25 NUT 201 A 1 HETATM 65 H H26 NUT . . . C 3 11.933 -14.999 -4.947 1 44.14 0 H26 NUT 201 A 1 HETATM 66 H H27 NUT . . . C 3 9.05 -18.042 -4.064 1 45.63 0 H27 NUT 201 A 1 HETATM 67 H H30 NUT . . . C 3 9.646 -18.304 -1.633 1 44.51 0 H30 NUT 201 A 1 HETATM 68 H H31 NUT . . . C 3 11.143 -19.247 -0.138 1 47.31 0 H31 NUT 201 A 1 HETATM 69 H H32 NUT . . . C 3 13.985 -19.229 -2.977 1 51.37 0 H32 NUT 201 A 1 HETATM 70 H H33 NUT . . . C 3 12.483 -18.284 -4.472 1 49.19 0 H33 NUT 201 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 70 #