data_8IAM # _model_server_result.job_id Di4z8dJh54H8FeWZXb_alg _model_server_result.datetime_utc '2024-10-20 20:41:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8iam # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":301}' # _entry.id 8IAM # _exptl.entry_id 8IAM _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 650.113 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(2S,3R,4E)-1,3-dihydroxyoctadec-4-en-2-yl]tetracosanamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8IAM _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8IAM _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 J N N ? 6 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B NZ LYS 366 B LYS 366 1_555 I C4A PLP . B PLP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale2 F NZ LYS 366 F LYS 366 1_555 K C4A PLP . F PLP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? # _chem_comp.formula 'C42 H83 N O3' _chem_comp.formula_weight 650.113 _chem_comp.id Z1T _chem_comp.mon_nstd_flag . _chem_comp.name N-[(2S,3R,4E)-1,3-dihydroxyoctadec-4-en-2-yl]tetracosanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 Z1T sing 400 n n N1 C17 Z1T sing 401 n n N1 C19 Z1T sing 402 n n O1 C16 Z1T sing 403 n n C2 C3 Z1T sing 404 n n O2 C18 Z1T sing 405 n n C3 C4 Z1T sing 406 n n C4 C5 Z1T sing 407 n n C5 C6 Z1T sing 408 n n C6 C7 Z1T sing 409 n n C7 C8 Z1T sing 410 n n C8 C9 Z1T sing 411 n n C9 C10 Z1T sing 412 n n C10 C11 Z1T sing 413 n n C11 C12 Z1T sing 414 n n C12 C13 Z1T sing 415 n n C13 C14 Z1T sing 416 n n C14 C15 Z1T doub 417 e n C15 C16 Z1T sing 418 n n C16 C17 Z1T sing 419 n n C17 C18 Z1T sing 420 n n O3 C19 Z1T doub 421 n n C19 C20 Z1T sing 422 n n C20 C21 Z1T sing 423 n n C21 C22 Z1T sing 424 n n C22 C23 Z1T sing 425 n n C23 C24 Z1T sing 426 n n C24 C25 Z1T sing 427 n n C25 C26 Z1T sing 428 n n C26 C27 Z1T sing 429 n n C27 C28 Z1T sing 430 n n C28 C29 Z1T sing 431 n n C29 C30 Z1T sing 432 n n C30 C31 Z1T sing 433 n n C31 C32 Z1T sing 434 n n C32 C33 Z1T sing 435 n n C33 C34 Z1T sing 436 n n C34 C35 Z1T sing 437 n n C35 C36 Z1T sing 438 n n C36 C37 Z1T sing 439 n n C37 C38 Z1T sing 440 n n C38 C39 Z1T sing 441 n n C39 C40 Z1T sing 442 n n C40 C41 Z1T sing 443 n n C41 C42 Z1T sing 444 n n C1 H11 Z1T sing 445 n n C1 H12 Z1T sing 446 n n C1 H13 Z1T sing 447 n n N1 H11N Z1T sing 448 n n O1 H1O Z1T sing 449 n n C2 H21 Z1T sing 450 n n C2 H22 Z1T sing 451 n n C3 H31 Z1T sing 452 n n C3 H32 Z1T sing 453 n n C4 H41 Z1T sing 454 n n C4 H42 Z1T sing 455 n n C5 H51 Z1T sing 456 n n C5 H52 Z1T sing 457 n n C6 H61 Z1T sing 458 n n C6 H62 Z1T sing 459 n n C7 H71 Z1T sing 460 n n C7 H72 Z1T sing 461 n n C8 H81 Z1T sing 462 n n C8 H82 Z1T sing 463 n n C9 H91 Z1T sing 464 n n C9 H92 Z1T sing 465 n n C10 H101 Z1T sing 466 n n C10 H102 Z1T sing 467 n n C11 H111 Z1T sing 468 n n C11 H112 Z1T sing 469 n n C12 H121 Z1T sing 470 n n C12 H122 Z1T sing 471 n n C13 H131 Z1T sing 472 n n C13 H132 Z1T sing 473 n n C14 H141 Z1T sing 474 n n C15 H151 Z1T sing 475 n n C16 H161 Z1T sing 476 n n C17 H171 Z1T sing 477 n n C18 H181 Z1T sing 478 n n C18 H182 Z1T sing 479 n n C20 H201 Z1T sing 480 n n C20 H202 Z1T sing 481 n n C21 H211 Z1T sing 482 n n C21 H212 Z1T sing 483 n n C22 H221 Z1T sing 484 n n C22 H222 Z1T sing 485 n n C23 H231 Z1T sing 486 n n C23 H232 Z1T sing 487 n n C24 H241 Z1T sing 488 n n C24 H242 Z1T sing 489 n n C25 H251 Z1T sing 490 n n C25 H252 Z1T sing 491 n n C26 H261 Z1T sing 492 n n C26 H262 Z1T sing 493 n n C27 H271 Z1T sing 494 n n C27 H272 Z1T sing 495 n n C28 H281 Z1T sing 496 n n C28 H282 Z1T sing 497 n n C29 H291 Z1T sing 498 n n C29 H292 Z1T sing 499 n n C30 H301 Z1T sing 500 n n C31 H311 Z1T sing 501 n n C32 H321 Z1T sing 502 n n C32 H322 Z1T sing 503 n n C33 H331 Z1T sing 504 n n C34 H341 Z1T sing 505 n n C35 H351 Z1T sing 506 n n C35 H352 Z1T sing 507 n n C36 H361 Z1T sing 508 n n C36 H362 Z1T sing 509 n n C37 H371 Z1T sing 510 n n C38 H381 Z1T sing 511 n n C39 H391 Z1T sing 512 n n C39 H392 Z1T sing 513 n n C42 H421 Z1T sing 514 n n C42 H422 Z1T sing 515 n n C42 H423 Z1T sing 516 n n C30 H302 Z1T sing 517 n n C31 H312 Z1T sing 518 n n C33 H332 Z1T sing 519 n n C34 H342 Z1T sing 520 n n C37 H372 Z1T sing 521 n n C38 H382 Z1T sing 522 n n C40 H401 Z1T sing 523 n n C40 H402 Z1T sing 524 n n C41 H411 Z1T sing 525 n n C41 H412 Z1T sing 526 n n O2 H2O Z1T sing 527 n n # _atom_sites.entry_id 8IAM _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 5 PLP B 1 601 601 PLP PLP . J 6 Z1T D 1 301 1 Z1T DRG . K 5 PLP F 1 601 601 PLP PLP . L 6 Z1T H 1 301 2 Z1T DRG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 Z1T . . . J 6 106.727 156.575 130.366 1 34.9 ? C1 Z1T 301 D 1 HETATM 2 N N1 Z1T . . . J 6 106.585 146.644 135.057 1 34.9 ? N1 Z1T 301 D 1 HETATM 3 O O1 Z1T . . . J 6 108.243 148.224 133.043 1 34.9 ? O1 Z1T 301 D 1 HETATM 4 C C2 Z1T . . . J 6 105.762 157.289 129.422 1 34.9 ? C2 Z1T 301 D 1 HETATM 5 O O2 Z1T . . . J 6 108.338 148.811 135.263 1 34.9 ? O2 Z1T 301 D 1 HETATM 6 C C3 Z1T . . . J 6 106.062 156.878 127.981 1 34.9 ? C3 Z1T 301 D 1 HETATM 7 C C4 Z1T . . . J 6 104.962 157.412 127.062 1 34.9 ? C4 Z1T 301 D 1 HETATM 8 C C5 Z1T . . . J 6 104.851 156.524 125.821 1 34.9 ? C5 Z1T 301 D 1 HETATM 9 C C6 Z1T . . . J 6 103.723 155.511 126.02 1 34.9 ? C6 Z1T 301 D 1 HETATM 10 C C7 Z1T . . . J 6 104.306 154.143 126.378 1 34.9 ? C7 Z1T 301 D 1 HETATM 11 C C8 Z1T . . . J 6 103.282 153.362 127.203 1 34.9 ? C8 Z1T 301 D 1 HETATM 12 C C9 Z1T . . . J 6 103.406 151.862 126.923 1 34.9 ? C9 Z1T 301 D 1 HETATM 13 C C10 Z1T . . . J 6 104.693 151.31 127.542 1 34.9 ? C10 Z1T 301 D 1 HETATM 14 C C11 Z1T . . . J 6 104.733 151.628 129.037 1 34.9 ? C11 Z1T 301 D 1 HETATM 15 C C12 Z1T . . . J 6 105.643 150.627 129.75 1 34.9 ? C12 Z1T 301 D 1 HETATM 16 C C13 Z1T . . . J 6 106.242 151.283 130.995 1 34.9 ? C13 Z1T 301 D 1 HETATM 17 C C14 Z1T . . . J 6 106.952 150.231 131.848 1 34.9 ? C14 Z1T 301 D 1 HETATM 18 C C15 Z1T . . . J 6 106.14 148.967 132.128 1 34.9 ? C15 Z1T 301 D 1 HETATM 19 C C16 Z1T . . . J 6 106.851 147.917 132.982 1 34.9 ? C16 Z1T 301 D 1 HETATM 20 C C17 Z1T . . . J 6 106.279 147.92 134.399 1 34.9 ? C17 Z1T 301 D 1 HETATM 21 C C18 Z1T . . . J 6 106.931 149.048 135.19 1 34.9 ? C18 Z1T 301 D 1 HETATM 22 O O3 Z1T . . . J 6 104.649 146.556 136.232 1 34.9 ? O3 Z1T 301 D 1 HETATM 23 C C19 Z1T . . . J 6 105.735 146.074 135.918 1 34.9 ? C19 Z1T 301 D 1 HETATM 24 C C20 Z1T . . . J 6 106.21 144.754 136.516 1 34.9 ? C20 Z1T 301 D 1 HETATM 25 C C21 Z1T . . . J 6 105.927 143.625 135.534 1 34.9 ? C21 Z1T 301 D 1 HETATM 26 C C22 Z1T . . . J 6 104.423 143.54 135.297 1 34.9 ? C22 Z1T 301 D 1 HETATM 27 C C23 Z1T . . . J 6 104.114 142.358 134.385 1 34.9 ? C23 Z1T 301 D 1 HETATM 28 C C24 Z1T . . . J 6 105.038 142.402 133.176 1 34.9 ? C24 Z1T 301 D 1 HETATM 29 C C25 Z1T . . . J 6 104.782 141.169 132.318 1 34.9 ? C25 Z1T 301 D 1 HETATM 30 C C26 Z1T . . . J 6 103.417 141.292 131.65 1 34.9 ? C26 Z1T 301 D 1 HETATM 31 C C27 Z1T . . . J 6 103.415 140.44 130.384 1 34.9 ? C27 Z1T 301 D 1 HETATM 32 C C28 Z1T . . . J 6 104.623 140.809 129.525 1 34.9 ? C28 Z1T 301 D 1 HETATM 33 C C29 Z1T . . . J 6 105.291 139.528 129.032 1 34.9 ? C29 Z1T 301 D 1 HETATM 34 C C30 Z1T . . . J 6 106.44 139.884 128.094 1 34.9 ? C30 Z1T 301 D 1 HETATM 35 C C31 Z1T . . . J 6 105.873 140.476 126.809 1 34.9 ? C31 Z1T 301 D 1 HETATM 36 C C32 Z1T . . . J 6 106.866 140.245 125.673 1 34.9 ? C32 Z1T 301 D 1 HETATM 37 C C33 Z1T . . . J 6 108.032 141.225 125.803 1 34.9 ? C33 Z1T 301 D 1 HETATM 38 C C34 Z1T . . . J 6 107.598 142.592 125.282 1 34.9 ? C34 Z1T 301 D 1 HETATM 39 C C35 Z1T . . . J 6 106.965 142.421 123.904 1 34.9 ? C35 Z1T 301 D 1 HETATM 40 C C36 Z1T . . . J 6 106.289 143.724 123.493 1 34.9 ? C36 Z1T 301 D 1 HETATM 41 C C37 Z1T . . . J 6 105.174 143.412 122.499 1 34.9 ? C37 Z1T 301 D 1 HETATM 42 C C38 Z1T . . . J 6 104.964 144.617 121.591 1 34.9 ? C38 Z1T 301 D 1 HETATM 43 C C39 Z1T . . . J 6 103.631 144.475 120.859 1 34.9 ? C39 Z1T 301 D 1 HETATM 44 C C40 Z1T . . . J 6 102.506 144.972 121.765 1 34.9 ? C40 Z1T 301 D 1 HETATM 45 C C41 Z1T . . . J 6 102.813 146.401 122.215 1 34.9 ? C41 Z1T 301 D 1 HETATM 46 C C42 Z1T . . . J 6 102.611 147.365 121.045 1 34.9 ? C42 Z1T 301 D 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 46 #