data_8IAR
#
_model_server_result.job_id            dUM8KPpalZ550sfVeTkOJQ 
_model_server_result.datetime_utc      '2024-12-22 10:25:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8iar 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"AA","auth_seq_id":405}' 
#
_entry.id    8IAR 
#
_exptl.entry_id    8IAR 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              863.343 
_entity.id                          13 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            UBIQUINONE-10 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    22-meric 
_pdbx_struct_assembly.oligomeric_count      22 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 13 AA N N 
? 13 LA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 338 AA CYS 338 1_555 A SG CYS 360 AA CYS 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf2 E SG CYS 222 AE CYS 222 1_555 E SG CYS 238 AE CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
disulf ? disulf3 H SG CYS 51 AH CYS 51 1_555 H SG CYS 65 AH CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 L SG CYS 338 Aa CYS 338 1_555 L SG CYS 360 Aa CYS 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf5 P SG CYS 222 Ae CYS 222 1_555 P SG CYS 238 Ae CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
disulf ? disulf6 S SG CYS 51 Ah CYS 51 1_555 S SG CYS 65 Ah CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
covale ? covale1 D SG CYS 121 AD CYS 121 1_555 CA CAB HEC . AD HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.904 ? 
covale ? covale2 O SG CYS 121 Ad CYS 121 1_555 NA CAB HEC . Ad HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.905 ? 
metalc ? metalc1 C NE2 HIS 83 AC HIS 83 1_555 X FE HEM . AC HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? 
metalc ? metalc2 C NE2 HIS 97 AC HIS 97 1_555 Y FE HEM . AC HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? 
metalc ? metalc3 C NE2 HIS 182 AC HIS 182 1_555 X FE HEM . AC HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? 
metalc ? metalc4 C NE2 HIS 196 AC HIS 196 1_555 Y FE HEM . AC HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? 
metalc ? metalc5 D NE2 HIS 125 AD HIS 125 1_555 CA FE HEC . AD HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? 
metalc ? metalc6 D SD MET 244 AD MET 244 1_555 CA FE HEC . AD HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? 
metalc ? metalc7 N NE2 HIS 83 Ac HIS 83 1_555 IA FE HEM . Ac HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
metalc ? metalc8 N NE2 HIS 97 Ac HIS 97 1_555 JA FE HEM . Ac HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? 
metalc ? metalc9 N NE2 HIS 182 Ac HIS 182 1_555 IA FE HEM . Ac HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? 
metalc ? metalc10 N NE2 HIS 196 Ac HIS 196 1_555 JA FE HEM . Ac HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? 
metalc ? metalc11 O NE2 HIS 125 Ad HIS 125 1_555 NA FE HEC . Ad HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? 
metalc ? metalc12 O SD MET 244 Ad MET 244 1_555 NA FE HEC . Ad HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? 
#
_chem_comp.formula           'C59 H90 O4' 
_chem_comp.formula_weight    863.343 
_chem_comp.id                U10 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              UBIQUINONE-10 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'Coenzyme Q10' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 U10 sing 1050 n n 
C1 C6 U10 doub 1051 n n 
C1 C1M U10 sing 1052 n n 
C2 C3 U10 sing 1053 n n 
C2 O2 U10 doub 1054 n n 
C3 C4 U10 doub 1055 n n 
C3 O3 U10 sing 1056 n n 
C4 C5 U10 sing 1057 n n 
C4 O4 U10 sing 1058 n n 
C5 C6 U10 sing 1059 n n 
C5 O5 U10 doub 1060 n n 
C6 C7 U10 sing 1061 n n 
C1M H1M1 U10 sing 1062 n n 
C1M H1M2 U10 sing 1063 n n 
C1M H1M3 U10 sing 1064 n n 
C3M O3 U10 sing 1065 n n 
C3M H3M1 U10 sing 1066 n n 
C3M H3M2 U10 sing 1067 n n 
C3M H3M3 U10 sing 1068 n n 
C4M O4 U10 sing 1069 n n 
C4M H4M1 U10 sing 1070 n n 
C4M H4M2 U10 sing 1071 n n 
C4M H4M3 U10 sing 1072 n n 
C7 C8 U10 sing 1073 n n 
C7 H71 U10 sing 1074 n n 
C7 H72 U10 sing 1075 n n 
C8 C9 U10 doub 1076 e n 
C8 H8 U10 sing 1077 n n 
C9 C10 U10 sing 1078 n n 
C9 C11 U10 sing 1079 n n 
C10 H101 U10 sing 1080 n n 
C10 H102 U10 sing 1081 n n 
C10 H103 U10 sing 1082 n n 
C11 C12 U10 sing 1083 n n 
C11 H111 U10 sing 1084 n n 
C11 H112 U10 sing 1085 n n 
C12 C13 U10 sing 1086 n n 
C12 H121 U10 sing 1087 n n 
C12 H122 U10 sing 1088 n n 
C13 C14 U10 doub 1089 e n 
C13 H13 U10 sing 1090 n n 
C14 C15 U10 sing 1091 n n 
C14 C16 U10 sing 1092 n n 
C15 H151 U10 sing 1093 n n 
C15 H152 U10 sing 1094 n n 
C15 H153 U10 sing 1095 n n 
C16 C17 U10 sing 1096 n n 
C16 H161 U10 sing 1097 n n 
C16 H162 U10 sing 1098 n n 
C17 C18 U10 sing 1099 n n 
C17 H171 U10 sing 1100 n n 
C17 H172 U10 sing 1101 n n 
C18 C19 U10 doub 1102 e n 
C18 H18 U10 sing 1103 n n 
C19 C20 U10 sing 1104 n n 
C19 C21 U10 sing 1105 n n 
C20 H201 U10 sing 1106 n n 
C20 H202 U10 sing 1107 n n 
C20 H203 U10 sing 1108 n n 
C21 C22 U10 sing 1109 n n 
C21 H211 U10 sing 1110 n n 
C21 H212 U10 sing 1111 n n 
C22 C23 U10 sing 1112 n n 
C22 H221 U10 sing 1113 n n 
C22 H222 U10 sing 1114 n n 
C23 C24 U10 doub 1115 e n 
C23 H23 U10 sing 1116 n n 
C24 C25 U10 sing 1117 n n 
C24 C26 U10 sing 1118 n n 
C25 H251 U10 sing 1119 n n 
C25 H252 U10 sing 1120 n n 
C25 H253 U10 sing 1121 n n 
C26 C27 U10 sing 1122 n n 
C26 H261 U10 sing 1123 n n 
C26 H262 U10 sing 1124 n n 
C27 C28 U10 sing 1125 n n 
C27 H271 U10 sing 1126 n n 
C27 H272 U10 sing 1127 n n 
C28 C29 U10 doub 1128 e n 
C28 H28 U10 sing 1129 n n 
C29 C30 U10 sing 1130 n n 
C29 C31 U10 sing 1131 n n 
C30 H301 U10 sing 1132 n n 
C30 H302 U10 sing 1133 n n 
C30 H303 U10 sing 1134 n n 
C31 C32 U10 sing 1135 n n 
C31 H311 U10 sing 1136 n n 
C31 H312 U10 sing 1137 n n 
C32 C33 U10 sing 1138 n n 
C32 H321 U10 sing 1139 n n 
C32 H322 U10 sing 1140 n n 
C33 C34 U10 doub 1141 e n 
C33 H33 U10 sing 1142 n n 
C34 C35 U10 sing 1143 n n 
C34 C36 U10 sing 1144 n n 
C35 H351 U10 sing 1145 n n 
C35 H352 U10 sing 1146 n n 
C35 H353 U10 sing 1147 n n 
C36 C37 U10 sing 1148 n n 
C36 H361 U10 sing 1149 n n 
C36 H362 U10 sing 1150 n n 
C37 C38 U10 sing 1151 n n 
C37 H371 U10 sing 1152 n n 
C37 H372 U10 sing 1153 n n 
C38 C39 U10 doub 1154 e n 
C38 H38 U10 sing 1155 n n 
C39 C40 U10 sing 1156 n n 
C39 C41 U10 sing 1157 n n 
C40 H401 U10 sing 1158 n n 
C40 H402 U10 sing 1159 n n 
C40 H403 U10 sing 1160 n n 
C41 C42 U10 sing 1161 n n 
C41 H411 U10 sing 1162 n n 
C41 H412 U10 sing 1163 n n 
C42 C43 U10 sing 1164 n n 
C42 H421 U10 sing 1165 n n 
C42 H422 U10 sing 1166 n n 
C43 C44 U10 doub 1167 e n 
C43 H43 U10 sing 1168 n n 
C44 C45 U10 sing 1169 n n 
C44 C46 U10 sing 1170 n n 
C45 H451 U10 sing 1171 n n 
C45 H452 U10 sing 1172 n n 
C45 H453 U10 sing 1173 n n 
C46 C47 U10 sing 1174 n n 
C46 H461 U10 sing 1175 n n 
C46 H462 U10 sing 1176 n n 
C47 C48 U10 sing 1177 n n 
C47 H471 U10 sing 1178 n n 
C47 H472 U10 sing 1179 n n 
C48 C49 U10 doub 1180 e n 
C48 H48 U10 sing 1181 n n 
C49 C50 U10 sing 1182 n n 
C49 C51 U10 sing 1183 n n 
C50 H501 U10 sing 1184 n n 
C50 H502 U10 sing 1185 n n 
C50 H503 U10 sing 1186 n n 
C51 C52 U10 sing 1187 n n 
C51 H511 U10 sing 1188 n n 
C51 H512 U10 sing 1189 n n 
C52 C53 U10 sing 1190 n n 
C52 H521 U10 sing 1191 n n 
C52 H522 U10 sing 1192 n n 
C53 C54 U10 doub 1193 n n 
C53 H53 U10 sing 1194 n n 
C54 C55 U10 sing 1195 n n 
C54 C56 U10 sing 1196 n n 
C55 H551 U10 sing 1197 n n 
C55 H552 U10 sing 1198 n n 
C55 H553 U10 sing 1199 n n 
C56 H561 U10 sing 1200 n n 
C56 H562 U10 sing 1201 n n 
C56 H563 U10 sing 1202 n n 
#
_atom_sites.entry_id                     8IAR 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
W 11 3PE AC 1 401 535 3PE 3PE . 
X 12 HEM AC 1 402 401 HEM HEM . 
Y 12 HEM AC 1 403 402 HEM HEM . 
Z 11 3PE AC 1 404 403 3PE 3PE . 
AA 13 U10 AC 1 405 505 U10 U10 . 
BA 14 UQ6 AC 1 406 506 UQ6 UQ6 . 
CA 15 HEC AD 1 401 395 HEC HEC . 
DA 16 CDL AG 1 101 102 CDL CDL . 
EA 16 CDL AG 1 102 103 CDL CDL . 
FA 11 3PE AG 1 103 104 3PE 3PE . 
GA 11 3PE Aa 1 501 535 3PE 3PE . 
HA 16 CDL Aa 1 502 536 CDL CDL . 
IA 12 HEM Ac 1 401 401 HEM HEM . 
JA 12 HEM Ac 1 402 402 HEM HEM . 
KA 11 3PE Ac 1 403 403 3PE 3PE . 
LA 13 U10 Ac 1 404 505 U10 U10 . 
MA 14 UQ6 Ac 1 405 506 UQ6 UQ6 . 
NA 15 HEC Ad 1 401 395 HEC HEC . 
OA 17 PC1 Ae 1 301 102 PC1 PC1 . 
PA 16 CDL Ag 1 101 102 CDL CDL . 
QA 16 CDL Ag 1 102 103 CDL CDL . 
RA 11 3PE Ag 1 103 104 3PE 3PE . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 U10 . . . AA 13 117.551 163.921 204.095 1 85.19 0 C1 U10 405 AC 1 
HETATM 2 C C2 U10 . . . AA 13 116.4 163.318 203.411 1 85.19 0 C2 U10 405 AC 1 
HETATM 3 C C3 U10 . . . AA 13 116.58 162.723 202.142 1 85.19 0 C3 U10 405 AC 1 
HETATM 4 C C4 U10 . . . AA 13 117.938 162.881 201.584 1 85.19 0 C4 U10 405 AC 1 
HETATM 5 C C5 U10 . . . AA 13 118.931 163.646 202.283 1 85.19 0 C5 U10 405 AC 1 
HETATM 6 C C6 U10 . . . AA 13 118.791 163.97 203.617 1 85.19 0 C6 U10 405 AC 1 
HETATM 7 C C1M U10 . . . AA 13 117.269 164.159 205.535 1 85.19 0 C1M U10 405 AC 1 
HETATM 8 C C3M U10 . . . AA 13 114.275 162.708 201.033 1 85.19 0 C3M U10 405 AC 1 
HETATM 9 C C4M U10 . . . AA 13 118.576 163.109 199.286 1 85.19 0 C4M U10 405 AC 1 
HETATM 10 C C7 U10 . . . AA 13 119.945 164.517 204.426 1 85.19 0 C7 U10 405 AC 1 
HETATM 11 C C8 U10 . . . AA 13 120.289 165.949 204.116 1 85.19 0 C8 U10 405 AC 1 
HETATM 12 C C9 U10 . . . AA 13 121.394 166.398 203.541 1 85.19 0 C9 U10 405 AC 1 
HETATM 13 C C10 U10 . . . AA 13 121.39 167.149 202.243 1 85.19 0 C10 U10 405 AC 1 
HETATM 14 C C11 U10 . . . AA 13 122.749 166.18 204.153 1 85.19 0 C11 U10 405 AC 1 
HETATM 15 C C12 U10 . . . AA 13 122.923 166.807 205.525 1 85.19 0 C12 U10 405 AC 1 
HETATM 16 C C13 U10 . . . AA 13 122.905 168.305 205.504 1 85.19 0 C13 U10 405 AC 1 
HETATM 17 C C14 U10 . . . AA 13 123.872 169.135 205.127 1 85.19 0 C14 U10 405 AC 1 
HETATM 18 C C15 U10 . . . AA 13 125.121 169.373 205.919 1 85.19 0 C15 U10 405 AC 1 
HETATM 19 C C16 U10 . . . AA 13 123.771 169.921 203.849 1 85.19 0 C16 U10 405 AC 1 
HETATM 20 O O2 U10 . . . AA 13 115.277 163.581 203.811 1 85.19 0 O2 U10 405 AC 1 
HETATM 21 O O3 U10 . . . AA 13 115.485 162.032 201.588 1 85.19 0 O3 U10 405 AC 1 
HETATM 22 O O4 U10 . . . AA 13 118.525 162.333 200.492 1 85.19 0 O4 U10 405 AC 1 
HETATM 23 O O5 U10 . . . AA 13 119.837 164.131 201.621 1 85.19 0 O5 U10 405 AC 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    54 
_model_server_stats.query_time_ms           367 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           23 
#