data_8IAV # _model_server_result.job_id bkyznJCpJvTDH9wbT0te5w _model_server_result.datetime_utc '2024-11-23 17:42:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8iav # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":601}' # _entry.id 8IAV # _exptl.entry_id 8IAV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 340.116 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,6-di-O-phosphono-beta-D-fructofuranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.22 _cell.angle_gamma 90 _cell.entry_id 8IAV _cell.length_a 217.032 _cell.length_b 86.789 _cell.length_c 129.857 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8IAV _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C6 H14 O12 P2' _chem_comp.formula_weight 340.116 _chem_comp.id FBP _chem_comp.mon_nstd_flag n _chem_comp.name 1,6-di-O-phosphono-beta-D-fructofuranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms BETA-FRUCTOSE-1,6-DIPHOSPHATE;FRUCTOSE-1,6-BISPHOSPHATE;1,6-di-O-phosphono-beta-D-fructose;1,6-di-O-phosphono-D-fructose;1,6-di-O-phosphono-fructose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1P FBP doub 83 n n P1 O2P FBP sing 84 n n P1 O3P FBP sing 85 n n P1 O1 FBP sing 86 n n O2P HOP2 FBP sing 87 n n O3P HOP3 FBP sing 88 n n O1 C1 FBP sing 89 n n C1 C2 FBP sing 90 n n C1 H11 FBP sing 91 n n C1 H12 FBP sing 92 n n C2 O2 FBP sing 93 n n C2 C3 FBP sing 94 n n C2 O5 FBP sing 95 n n O2 HO2 FBP sing 96 n n C3 O3 FBP sing 97 n n C3 C4 FBP sing 98 n n C3 H3 FBP sing 99 n n O3 HO3 FBP sing 100 n n C4 O4 FBP sing 101 n n C4 C5 FBP sing 102 n n C4 H4 FBP sing 103 n n O4 HO4 FBP sing 104 n n C5 O5 FBP sing 105 n n C5 C6 FBP sing 106 n n C5 H5 FBP sing 107 n n C6 O6 FBP sing 108 n n C6 H61 FBP sing 109 n n C6 H62 FBP sing 110 n n O6 P2 FBP sing 111 n n P2 O4P FBP doub 112 n n P2 O5P FBP sing 113 n n P2 O6P FBP sing 114 n n O5P HOP5 FBP sing 115 n n O6P HOP6 FBP sing 116 n n # _pdbx_chem_comp_identifier.comp_id FBP _pdbx_chem_comp_identifier.identifier b-D-Fruf1PO36PO3 _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 8IAV _atom_sites.fract_transf_matrix[1][1] 0.004608 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001083 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011522 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007911 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FBP A 1 601 2 FBP FBP . F 2 FBP B 1 601 1 FBP FBP . G 2 FBP C 1 601 3 FBP FBP . H 2 FBP D 1 601 4 FBP FBP . I 3 HOH A 1 701 3 HOH HOH . I 3 HOH A 2 702 2 HOH HOH . I 3 HOH A 3 703 1 HOH HOH . J 3 HOH B 1 701 4 HOH HOH . J 3 HOH B 2 702 8 HOH HOH . J 3 HOH B 3 703 7 HOH HOH . J 3 HOH B 4 704 5 HOH HOH . J 3 HOH B 5 705 6 HOH HOH . K 3 HOH C 1 701 10 HOH HOH . K 3 HOH C 2 702 11 HOH HOH . K 3 HOH C 3 703 12 HOH HOH . L 3 HOH D 1 701 18 HOH HOH . L 3 HOH D 2 702 14 HOH HOH . L 3 HOH D 3 703 16 HOH HOH . L 3 HOH D 4 704 13 HOH HOH . L 3 HOH D 5 705 17 HOH HOH . L 3 HOH D 6 706 9 HOH HOH . L 3 HOH D 7 707 15 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 FBP . . . F 2 -25.793 -14.871 38.418 1 86.19 ? P1 FBP 601 B 1 HETATM 2 O O1P FBP . . . F 2 -27.238 -14.602 38.123 1 71.83 ? O1P FBP 601 B 1 HETATM 3 O O2P FBP . . . F 2 -25.184 -14.024 39.544 1 73.33 ? O2P FBP 601 B 1 HETATM 4 O O3P FBP . . . F 2 -25.657 -16.368 38.537 1 76.16 ? O3P FBP 601 B 1 HETATM 5 O O1 FBP . . . F 2 -24.932 -14.515 37.118 1 74.47 ? O1 FBP 601 B 1 HETATM 6 C C1 FBP . . . F 2 -25.391 -13.506 36.224 1 83.39 ? C1 FBP 601 B 1 HETATM 7 C C2 FBP . . . F 2 -24.2 -13.206 35.342 1 87.78 ? C2 FBP 601 B 1 HETATM 8 O O2 FBP . . . F 2 -23.031 -13.425 36.149 1 84.34 ? O2 FBP 601 B 1 HETATM 9 C C3 FBP . . . F 2 -24.185 -11.806 34.782 1 84.58 ? C3 FBP 601 B 1 HETATM 10 O O3 FBP . . . F 2 -23.756 -10.918 35.791 1 89.68 ? O3 FBP 601 B 1 HETATM 11 C C4 FBP . . . F 2 -23.188 -11.933 33.647 1 82.28 ? C4 FBP 601 B 1 HETATM 12 O O4 FBP . . . F 2 -23.569 -11.175 32.507 1 78.83 ? O4 FBP 601 B 1 HETATM 13 C C5 FBP . . . F 2 -23.214 -13.396 33.267 1 76.33 ? C5 FBP 601 B 1 HETATM 14 O O5 FBP . . . F 2 -24.136 -14.02 34.167 1 83.36 ? O5 FBP 601 B 1 HETATM 15 C C6 FBP . . . F 2 -21.806 -13.926 33.365 1 70.37 ? C6 FBP 601 B 1 HETATM 16 O O6 FBP . . . F 2 -21.734 -15.136 32.626 1 64.36 ? O6 FBP 601 B 1 HETATM 17 P P2 FBP . . . F 2 -20.382 -15.838 32.105 1 72.84 ? P2 FBP 601 B 1 HETATM 18 O O4P FBP . . . F 2 -19.937 -15.162 30.839 1 75.73 ? O4P FBP 601 B 1 HETATM 19 O O5P FBP . . . F 2 -20.882 -17.236 31.819 1 71.81 ? O5P FBP 601 B 1 HETATM 20 O O6P FBP . . . F 2 -19.361 -15.691 33.221 1 76.11 ? O6P FBP 601 B 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #