data_8IB5 # _model_server_result.job_id 5jHycoITUrXg5W_OFOg6iQ _model_server_result.datetime_utc '2024-12-22 09:24:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ib5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"IA","auth_seq_id":402}' # _entry.id 8IB5 # _exptl.entry_id 8IB5 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 790.145 _entity.id 27 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 23-meric _pdbx_struct_assembly.oligomeric_count 23 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 27 AA N N ? 27 IA N N ? 27 KA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 G SG CYS 64 G CYS 64 1_555 G SG CYS 75 G CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? disulf ? disulf2 Q SG CYS 36 X CYS 36 1_555 Q SG CYS 66 X CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? disulf ? disulf3 Q SG CYS 46 X CYS 46 1_555 Q SG CYS 56 X CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 Q SG CYS 78 X CYS 78 1_555 Q SG CYS 110 X CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? disulf ? disulf5 Q SG CYS 88 X CYS 88 1_555 Q SG CYS 100 X CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc1 B SG CYS 99 B CYS 99 1_555 Y FE1 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc2 B O CYS 194 B CYS 194 1_555 Y FE3 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? metalc ? metalc3 B SG CYS 194 B CYS 194 1_555 Y FE3 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc4 E SG CYS 134 E CYS 134 1_555 BA FE1 FES . E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.943 ? metalc ? metalc5 F SG CYS 385 F CYS 385 1_555 DA FE2 SF4 . F SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? metalc ? metalc6 G O PHE 63 G PHE 63 1_555 GA FE1 FES . G FES 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc7 G SG CYS 75 G CYS 75 1_555 GA FE1 FES . G FES 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc8 G NE2 HIS 124 G HIS 124 1_555 EA FE1 SF4 . G SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? metalc ? metalc9 G SG CYS 128 G CYS 128 1_555 EA FE3 SF4 . G SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc10 G SG CYS 137 G CYS 137 1_555 EA FE4 SF4 . G SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc11 G SG CYS 182 G CYS 182 1_555 FA FE2 SF4 . G SF4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc12 I SG CYS 116 I CYS 116 1_555 MA FE1 SF4 . I SF4 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc13 I SG CYS 119 I CYS 119 1_555 MA FE2 SF4 . I SF4 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc14 I SG CYS 158 I CYS 158 1_555 LA FE3 SF4 . I SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc15 L SG CYS 79 R CYS 79 1_555 OA ZN ZN . R ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc16 L NE2 HIS 88 R HIS 88 1_555 OA ZN ZN . R ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? metalc ? metalc17 L SG CYS 104 R CYS 104 1_555 OA ZN ZN . R ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc18 L SG CYS 107 R CYS 107 1_555 OA ZN ZN . R ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? # _chem_comp.formula 'C44 H88 N O8 P' _chem_comp.formula_weight 790.145 _chem_comp.id PC1 _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-SN-PHOSPHATIDYLCHOLINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O12 P PC1 sing 848 n n P O14 PC1 doub 849 n n P O13 PC1 sing 850 n n P O11 PC1 sing 851 n n O13 C11 PC1 sing 852 n n C11 C12 PC1 sing 853 n n C11 H111 PC1 sing 854 n n C11 H112 PC1 sing 855 n n C12 N PC1 sing 856 n n C12 H121 PC1 sing 857 n n C12 H122 PC1 sing 858 n n N C13 PC1 sing 859 n n N C14 PC1 sing 860 n n N C15 PC1 sing 861 n n C13 H131 PC1 sing 862 n n C13 H132 PC1 sing 863 n n C13 H133 PC1 sing 864 n n C14 H141 PC1 sing 865 n n C14 H142 PC1 sing 866 n n C14 H143 PC1 sing 867 n n C15 H151 PC1 sing 868 n n C15 H152 PC1 sing 869 n n C15 H153 PC1 sing 870 n n O11 C1 PC1 sing 871 n n C1 C2 PC1 sing 872 n n C1 H11 PC1 sing 873 n n C1 H12 PC1 sing 874 n n C2 O21 PC1 sing 875 n n C2 C3 PC1 sing 876 n n C2 H2 PC1 sing 877 n n O21 C21 PC1 sing 878 n n C21 O22 PC1 doub 879 n n C21 C22 PC1 sing 880 n n C22 C23 PC1 sing 881 n n C22 H221 PC1 sing 882 n n C22 H222 PC1 sing 883 n n C23 C24 PC1 sing 884 n n C23 H231 PC1 sing 885 n n C23 H232 PC1 sing 886 n n C24 C25 PC1 sing 887 n n C24 H241 PC1 sing 888 n n C24 H242 PC1 sing 889 n n C25 C26 PC1 sing 890 n n C25 H251 PC1 sing 891 n n C25 H252 PC1 sing 892 n n C26 C27 PC1 sing 893 n n C26 H261 PC1 sing 894 n n C26 H262 PC1 sing 895 n n C27 C28 PC1 sing 896 n n C27 H271 PC1 sing 897 n n C27 H272 PC1 sing 898 n n C28 C29 PC1 sing 899 n n C28 H281 PC1 sing 900 n n C28 H282 PC1 sing 901 n n C29 C2A PC1 sing 902 n n C29 H291 PC1 sing 903 n n C29 H292 PC1 sing 904 n n C2A C2B PC1 sing 905 n n C2A H2A1 PC1 sing 906 n n C2A H2A2 PC1 sing 907 n n C2B C2C PC1 sing 908 n n C2B H2B1 PC1 sing 909 n n C2B H2B2 PC1 sing 910 n n C2C C2D PC1 sing 911 n n C2C H2C1 PC1 sing 912 n n C2C H2C2 PC1 sing 913 n n C2D C2E PC1 sing 914 n n C2D H2D1 PC1 sing 915 n n C2D H2D2 PC1 sing 916 n n C2E C2F PC1 sing 917 n n C2E H2E1 PC1 sing 918 n n C2E H2E2 PC1 sing 919 n n C2F C2G PC1 sing 920 n n C2F H2F1 PC1 sing 921 n n C2F H2F2 PC1 sing 922 n n C2G C2H PC1 sing 923 n n C2G H2G1 PC1 sing 924 n n C2G H2G2 PC1 sing 925 n n C2H C2I PC1 sing 926 n n C2H H2H1 PC1 sing 927 n n C2H H2H2 PC1 sing 928 n n C2I H2I1 PC1 sing 929 n n C2I H2I2 PC1 sing 930 n n C2I H2I3 PC1 sing 931 n n C3 O31 PC1 sing 932 n n C3 H31 PC1 sing 933 n n C3 H32 PC1 sing 934 n n O31 C31 PC1 sing 935 n n C31 O32 PC1 doub 936 n n C31 C32 PC1 sing 937 n n C32 C33 PC1 sing 938 n n C32 H321 PC1 sing 939 n n C32 H322 PC1 sing 940 n n C33 C34 PC1 sing 941 n n C33 H331 PC1 sing 942 n n C33 H332 PC1 sing 943 n n C34 C35 PC1 sing 944 n n C34 H341 PC1 sing 945 n n C34 H342 PC1 sing 946 n n C35 C36 PC1 sing 947 n n C35 H351 PC1 sing 948 n n C35 H352 PC1 sing 949 n n C36 C37 PC1 sing 950 n n C36 H361 PC1 sing 951 n n C36 H362 PC1 sing 952 n n C37 C38 PC1 sing 953 n n C37 H371 PC1 sing 954 n n C37 H372 PC1 sing 955 n n C38 C39 PC1 sing 956 n n C38 H381 PC1 sing 957 n n C38 H382 PC1 sing 958 n n C39 C3A PC1 sing 959 n n C39 H391 PC1 sing 960 n n C39 H392 PC1 sing 961 n n C3A C3B PC1 sing 962 n n C3A H3A1 PC1 sing 963 n n C3A H3A2 PC1 sing 964 n n C3B C3C PC1 sing 965 n n C3B H3B1 PC1 sing 966 n n C3B H3B2 PC1 sing 967 n n C3C C3D PC1 sing 968 n n C3C H3C1 PC1 sing 969 n n C3C H3C2 PC1 sing 970 n n C3D C3E PC1 sing 971 n n C3D H3D1 PC1 sing 972 n n C3D H3D2 PC1 sing 973 n n C3E C3F PC1 sing 974 n n C3E H3E1 PC1 sing 975 n n C3E H3E2 PC1 sing 976 n n C3F C3G PC1 sing 977 n n C3F H3F1 PC1 sing 978 n n C3F H3F2 PC1 sing 979 n n C3G C3H PC1 sing 980 n n C3G H3G1 PC1 sing 981 n n C3G H3G2 PC1 sing 982 n n C3H C3I PC1 sing 983 n n C3H H3H1 PC1 sing 984 n n C3H H3H2 PC1 sing 985 n n C3I H3I1 PC1 sing 986 n n C3I H3I2 PC1 sing 987 n n C3I H3I3 PC1 sing 988 n n # _atom_sites.entry_id 8IB5 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code X 24 3PE A 1 401 401 3PE 3PE . Y 25 SF4 B 1 301 236 SF4 SF4 . Z 26 UQ1 B 1 302 501 UQ1 UQ1 . AA 27 PC1 B 1 303 406 PC1 PC1 . BA 28 FES E 1 301 332 FES FES . CA 29 FMN F 1 501 521 FMN FMN . DA 25 SF4 F 1 502 522 SF4 SF4 . EA 25 SF4 G 1 801 824 SF4 SF4 . FA 25 SF4 G 1 802 825 SF4 SF4 . GA 28 FES G 1 803 826 FES FES . HA 30 UQ9 H 1 401 400 UQ9 UQ9 . IA 27 PC1 H 1 402 402 PC1 PC1 . JA 24 3PE I 1 301 403 3PE 3PE . KA 27 PC1 I 1 302 404 PC1 PC1 . LA 25 SF4 I 1 303 235 SF4 SF4 . MA 25 SF4 I 1 304 236 SF4 SF4 . NA 31 NDP P 1 401 536 NDP NDP . OA 32 ZN R 1 201 221 ZN ZN . PA 33 EHZ W 1 201 201 EHZ EHZ . QA 34 CDL a 1 101 405 CDL CDL . RA 24 3PE b 1 201 201 3PE 3PE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O12 PC1 . . . IA 27 236.076 194.504 183.867 1 43.79 -1 O12 PC1 402 H 1 HETATM 2 P P PC1 . . . IA 27 234.877 194.097 184.681 1 43.79 0 P PC1 402 H 1 HETATM 3 O O14 PC1 . . . IA 27 234.957 192.885 185.575 1 43.79 0 O14 PC1 402 H 1 HETATM 4 O O13 PC1 . . . IA 27 234.411 195.39 185.512 1 43.79 0 O13 PC1 402 H 1 HETATM 5 C C11 PC1 . . . IA 27 234.267 195.318 186.922 1 43.79 0 C11 PC1 402 H 1 HETATM 6 C C12 PC1 . . . IA 27 235.611 194.902 187.493 1 43.79 0 C12 PC1 402 H 1 HETATM 7 N N PC1 . . . IA 27 235.459 194.629 188.919 1 43.79 0 N PC1 402 H 1 HETATM 8 C C13 PC1 . . . IA 27 234.057 194.318 189.217 1 43.79 0 C13 PC1 402 H 1 HETATM 9 C C14 PC1 . . . IA 27 236.293 193.476 189.277 1 43.79 0 C14 PC1 402 H 1 HETATM 10 C C15 PC1 . . . IA 27 235.888 195.819 189.657 1 43.79 0 C15 PC1 402 H 1 HETATM 11 O O11 PC1 . . . IA 27 233.618 193.904 183.707 1 43.79 0 O11 PC1 402 H 1 HETATM 12 C C1 PC1 . . . IA 27 232.435 194.687 183.868 1 43.79 0 C1 PC1 402 H 1 HETATM 13 C C2 PC1 . . . IA 27 231.496 194.416 182.701 1 43.79 0 C2 PC1 402 H 1 HETATM 14 O O21 PC1 . . . IA 27 232.178 194.701 181.487 1 43.79 0 O21 PC1 402 H 1 HETATM 15 C C21 PC1 . . . IA 27 233.021 193.595 181.062 1 43.79 0 C21 PC1 402 H 1 HETATM 16 O O22 PC1 . . . IA 27 232.844 192.487 181.542 1 43.79 0 O22 PC1 402 H 1 HETATM 17 C C22 PC1 . . . IA 27 234.11 193.821 180.043 1 43.79 0 C22 PC1 402 H 1 HETATM 18 C C23 PC1 . . . IA 27 233.496 194.449 178.803 1 43.79 0 C23 PC1 402 H 1 HETATM 19 C C24 PC1 . . . IA 27 234.471 194.41 177.638 1 43.79 0 C24 PC1 402 H 1 HETATM 20 C C25 PC1 . . . IA 27 233.823 195.032 176.41 1 43.79 0 C25 PC1 402 H 1 HETATM 21 C C26 PC1 . . . IA 27 234.488 194.573 175.117 1 43.79 0 C26 PC1 402 H 1 HETATM 22 C C27 PC1 . . . IA 27 235.877 195.163 174.919 1 43.79 0 C27 PC1 402 H 1 HETATM 23 C C28 PC1 . . . IA 27 236.413 194.765 173.552 1 43.79 0 C28 PC1 402 H 1 HETATM 24 C C29 PC1 . . . IA 27 237.674 195.54 173.2 1 43.79 0 C29 PC1 402 H 1 HETATM 25 C C2A PC1 . . . IA 27 237.43 197.04 173.291 1 43.79 0 C2A PC1 402 H 1 HETATM 26 C C2B PC1 . . . IA 27 238.64 197.822 172.796 1 43.79 0 C2B PC1 402 H 1 HETATM 27 C C3 PC1 . . . IA 27 230.265 195.307 182.791 1 43.79 0 C3 PC1 402 H 1 HETATM 28 O O31 PC1 . . . IA 27 229.483 195.151 181.608 1 43.79 0 O31 PC1 402 H 1 HETATM 29 C C31 PC1 . . . IA 27 228.938 196.318 180.936 1 43.79 0 C31 PC1 402 H 1 HETATM 30 O O32 PC1 . . . IA 27 227.732 196.478 180.865 1 43.79 0 O32 PC1 402 H 1 HETATM 31 C C32 PC1 . . . IA 27 229.878 197.334 180.352 1 43.79 0 C32 PC1 402 H 1 HETATM 32 C C33 PC1 . . . IA 27 230.561 196.672 179.168 1 43.79 0 C33 PC1 402 H 1 HETATM 33 C C34 PC1 . . . IA 27 229.649 196.672 177.952 1 43.79 0 C34 PC1 402 H 1 HETATM 34 C C35 PC1 . . . IA 27 229.507 198.089 177.409 1 43.79 0 C35 PC1 402 H 1 HETATM 35 C C36 PC1 . . . IA 27 228.796 198.137 176.063 1 43.79 0 C36 PC1 402 H 1 HETATM 36 C C37 PC1 . . . IA 27 229.751 197.839 174.915 1 43.79 0 C37 PC1 402 H 1 HETATM 37 C C38 PC1 . . . IA 27 230.117 196.365 174.868 1 43.79 0 C38 PC1 402 H 1 HETATM 38 C C39 PC1 . . . IA 27 231.126 196.064 173.772 1 43.79 0 C39 PC1 402 H 1 HETATM 39 C C3A PC1 . . . IA 27 231.376 194.563 173.728 1 43.79 0 C3A PC1 402 H 1 HETATM 40 C C3B PC1 . . . IA 27 232.278 194.182 172.562 1 43.79 0 C3B PC1 402 H 1 HETATM 41 C C3C PC1 . . . IA 27 232.532 192.681 172.545 1 43.79 0 C3C PC1 402 H 1 HETATM 42 C C3D PC1 . . . IA 27 233.395 192.306 171.347 1 43.79 0 C3D PC1 402 H 1 # _model_server_stats.io_time_ms 36 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 67 _model_server_stats.query_time_ms 359 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 42 #