data_8IB6
#
_model_server_result.job_id            Ns8CU-m3xDOOWIuJxjUdlQ 
_model_server_result.datetime_utc      '2024-11-05 05:00:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ib6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Z","auth_seq_id":701}' 
#
_entry.id    8IB6 
#
_exptl.entry_id    8IB6 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              748.065 
_entity.id                          25 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-Distearoyl-sn-glycerophosphoethanolamine 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    24-meric 
_pdbx_struct_assembly.oligomeric_count      24 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 25 Y N N 
? 25 Z N N 
? 25 AA N N 
? 25 BA N N 
? 25 CA N N 
? 25 FA N N 
? 25 GA N N 
? 25 HA N N 
? 25 IA N N 
? 25 JA N N 
? 25 KA N N 
? 25 NA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 J SG CYS 20 Y CYS 20 1_555 J SG CYS 77 Y CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf2 J SG CYS 97 Y CYS 97 1_555 J SG CYS 117 Y CYS 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? 
disulf ? disulf3 M SG CYS 33 e CYS 33 1_555 M SG CYS 66 e CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf4 M SG CYS 43 e CYS 43 1_555 M SG CYS 56 e CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf5 W SG CYS 59 o CYS 59 1_555 W SG CYS 90 o CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
disulf ? disulf6 W SG CYS 69 o CYS 69 1_555 W SG CYS 80 o CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? 
disulf ? disulf7 X SG CYS 77 p CYS 77 1_555 X SG CYS 84 p CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf8 X SG CYS 113 p CYS 113 1_555 X SG CYS 125 p CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
#
_chem_comp.formula           'C41 H82 N O8 P' 
_chem_comp.formula_weight    748.065 
_chem_comp.id                3PE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-Distearoyl-sn-glycerophosphoethanolamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     3-SN-PHOSPHATIDYLETHANOLAMINE;1,2-DIACYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O11 3PE sing 1 n n 
P O12 3PE sing 2 n n 
P O13 3PE sing 3 n n 
P O14 3PE doub 4 n n 
N C12 3PE sing 5 n n 
N HN1 3PE sing 6 n n 
N HN2 3PE sing 7 n n 
O11 C1 3PE sing 8 n n 
O13 C11 3PE sing 9 n n 
C11 C12 3PE sing 10 n n 
C11 H111 3PE sing 11 n n 
C11 H112 3PE sing 12 n n 
C12 H121 3PE sing 13 n n 
C12 H122 3PE sing 14 n n 
C1 C2 3PE sing 15 n n 
C1 H11 3PE sing 16 n n 
C1 H12 3PE sing 17 n n 
C2 C3 3PE sing 18 n n 
C2 O21 3PE sing 19 n n 
C2 H2 3PE sing 20 n n 
C3 O31 3PE sing 21 n n 
C3 H31 3PE sing 22 n n 
C3 H32 3PE sing 23 n n 
O31 C31 3PE sing 24 n n 
O32 C31 3PE doub 25 n n 
C31 C32 3PE sing 26 n n 
C32 C33 3PE sing 27 n n 
C32 H321 3PE sing 28 n n 
C32 H322 3PE sing 29 n n 
C33 C34 3PE sing 30 n n 
C33 H331 3PE sing 31 n n 
C33 H332 3PE sing 32 n n 
C34 C35 3PE sing 33 n n 
C34 H341 3PE sing 34 n n 
C34 H342 3PE sing 35 n n 
C35 C36 3PE sing 36 n n 
C35 H351 3PE sing 37 n n 
C35 H352 3PE sing 38 n n 
C36 C37 3PE sing 39 n n 
C36 H361 3PE sing 40 n n 
C36 H362 3PE sing 41 n n 
C37 C38 3PE sing 42 n n 
C37 H371 3PE sing 43 n n 
C37 H372 3PE sing 44 n n 
C38 C39 3PE sing 45 n n 
C38 H381 3PE sing 46 n n 
C38 H382 3PE sing 47 n n 
C39 C3A 3PE sing 48 n n 
C39 H391 3PE sing 49 n n 
C39 H392 3PE sing 50 n n 
C3A C3B 3PE sing 51 n n 
C3A H3A1 3PE sing 52 n n 
C3A H3A2 3PE sing 53 n n 
C3B C3C 3PE sing 54 n n 
C3B H3B1 3PE sing 55 n n 
C3B H3B2 3PE sing 56 n n 
C3C C3D 3PE sing 57 n n 
C3C H3C1 3PE sing 58 n n 
C3C H3C2 3PE sing 59 n n 
C3D C3E 3PE sing 60 n n 
C3D H3D1 3PE sing 61 n n 
C3D H3D2 3PE sing 62 n n 
C3E C3F 3PE sing 63 n n 
C3E H3E1 3PE sing 64 n n 
C3E H3E2 3PE sing 65 n n 
C3F C3G 3PE sing 66 n n 
C3F H3F1 3PE sing 67 n n 
C3F H3F2 3PE sing 68 n n 
C3G C3H 3PE sing 69 n n 
C3G H3G1 3PE sing 70 n n 
C3G H3G2 3PE sing 71 n n 
C3H C3I 3PE sing 72 n n 
C3H H3H1 3PE sing 73 n n 
C3H H3H2 3PE sing 74 n n 
C3I H3I1 3PE sing 75 n n 
C3I H3I2 3PE sing 76 n n 
C3I H3I3 3PE sing 77 n n 
O21 C21 3PE sing 78 n n 
O22 C21 3PE doub 79 n n 
C21 C22 3PE sing 80 n n 
C22 C23 3PE sing 81 n n 
C22 H221 3PE sing 82 n n 
C22 H222 3PE sing 83 n n 
C23 C24 3PE sing 84 n n 
C23 H231 3PE sing 85 n n 
C23 H232 3PE sing 86 n n 
C24 C25 3PE sing 87 n n 
C24 H241 3PE sing 88 n n 
C24 H242 3PE sing 89 n n 
C25 C26 3PE sing 90 n n 
C25 H251 3PE sing 91 n n 
C25 H252 3PE sing 92 n n 
C26 C27 3PE sing 93 n n 
C26 H261 3PE sing 94 n n 
C26 H262 3PE sing 95 n n 
C27 C28 3PE sing 96 n n 
C27 H271 3PE sing 97 n n 
C27 H272 3PE sing 98 n n 
C28 C29 3PE sing 99 n n 
C28 H281 3PE sing 100 n n 
C28 H282 3PE sing 101 n n 
C29 C2A 3PE sing 102 n n 
C29 H291 3PE sing 103 n n 
C29 H292 3PE sing 104 n n 
C2A C2B 3PE sing 105 n n 
C2A H2A1 3PE sing 106 n n 
C2A H2A2 3PE sing 107 n n 
C2B C2C 3PE sing 108 n n 
C2B H2B1 3PE sing 109 n n 
C2B H2B2 3PE sing 110 n n 
C2C C2D 3PE sing 111 n n 
C2C H2C1 3PE sing 112 n n 
C2C H2C2 3PE sing 113 n n 
C2D C2E 3PE sing 114 n n 
C2D H2D1 3PE sing 115 n n 
C2D H2D2 3PE sing 116 n n 
C2E C2F 3PE sing 117 n n 
C2E H2E1 3PE sing 118 n n 
C2E H2E2 3PE sing 119 n n 
C2F C2G 3PE sing 120 n n 
C2F H2F1 3PE sing 121 n n 
C2F H2F2 3PE sing 122 n n 
C2G C2H 3PE sing 123 n n 
C2G H2G1 3PE sing 124 n n 
C2G H2G2 3PE sing 125 n n 
C2H C2I 3PE sing 126 n n 
C2H H2H1 3PE sing 127 n n 
C2H H2H2 3PE sing 128 n n 
C2I H2I1 3PE sing 129 n n 
C2I H2I2 3PE sing 130 n n 
C2I H2I3 3PE sing 131 n n 
O12 H1 3PE sing 132 n n 
#
_atom_sites.entry_id                     8IB6 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
Y 25 3PE J 1 201 203 3PE 3PE . 
Z 25 3PE L 1 701 699 3PE 3PE . 
AA 25 3PE L 1 702 700 3PE 3PE . 
BA 25 3PE L 1 703 701 3PE 3PE . 
CA 25 3PE L 1 704 703 3PE 3PE . 
DA 26 CDL L 1 705 704 CDL CDL . 
EA 26 CDL L 1 706 706 CDL CDL . 
FA 25 3PE L 1 707 501 3PE 3PE . 
GA 25 3PE M 1 501 503 3PE 3PE . 
HA 25 3PE M 1 502 504 3PE 3PE . 
IA 25 3PE M 1 503 506 3PE 3PE . 
JA 25 3PE N 1 401 502 3PE 3PE . 
KA 25 3PE O 1 401 505 3PE 3PE . 
LA 27 ADP O 1 402 401 ADP ADP . 
MA 26 CDL X 1 201 507 CDL CDL . 
NA 25 3PE Y 1 201 702 3PE 3PE . 
OA 26 CDL h 1 201 705 CDL CDL . 
PA 28 EHZ n 1 201 201 EHZ EHZ . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P 3PE . . . Z 25 150.437 275.204 169.548 1 20 0 P 3PE 701 L 1 
HETATM 2 N N 3PE . . . Z 25 147.107 276.396 165.95 1 20 0 N 3PE 701 L 1 
HETATM 3 O O11 3PE . . . Z 25 150.812 276.591 170.263 1 20 0 O11 3PE 701 L 1 
HETATM 4 O O12 3PE . . . Z 25 151.352 275.022 168.367 1 20 -1 O12 3PE 701 L 1 
HETATM 5 O O13 3PE . . . Z 25 148.958 275.492 168.999 1 20 0 O13 3PE 701 L 1 
HETATM 6 O O14 3PE . . . Z 25 150.334 274.129 170.597 1 20 0 O14 3PE 701 L 1 
HETATM 7 C C11 3PE . . . Z 25 148.772 276.1 167.727 1 20 0 C11 3PE 701 L 1 
HETATM 8 C C12 3PE . . . Z 25 147.289 276.111 167.395 1 20 0 C12 3PE 701 L 1 
HETATM 9 C C1 3PE . . . Z 25 151.349 276.6 171.579 1 20 0 C1 3PE 701 L 1 
HETATM 10 C C2 3PE . . . Z 25 150.226 276.865 172.578 1 20 0 C2 3PE 701 L 1 
HETATM 11 C C3 3PE . . . Z 25 150.845 277.101 173.953 1 20 0 C3 3PE 701 L 1 
HETATM 12 O O31 3PE . . . Z 25 150.246 276.203 174.88 1 20 0 O31 3PE 701 L 1 
HETATM 13 O O32 3PE . . . Z 25 151.114 274.332 173.853 1 20 0 O32 3PE 701 L 1 
HETATM 14 C C31 3PE . . . Z 25 150.64 274.808 174.868 1 20 0 C31 3PE 701 L 1 
HETATM 15 C C32 3PE . . . Z 25 150.472 273.96 176.1 1 20 0 C32 3PE 701 L 1 
HETATM 16 C C33 3PE . . . Z 25 149.027 274.002 176.567 1 20 0 C33 3PE 701 L 1 
HETATM 17 C C34 3PE . . . Z 25 148.777 272.908 177.592 1 20 0 C34 3PE 701 L 1 
HETATM 18 C C35 3PE . . . Z 25 149.512 273.183 178.895 1 20 0 C35 3PE 701 L 1 
HETATM 19 C C36 3PE . . . Z 25 149.557 271.924 179.742 1 20 0 C36 3PE 701 L 1 
HETATM 20 C C37 3PE . . . Z 25 150.317 272.178 181.033 1 20 0 C37 3PE 701 L 1 
HETATM 21 C C38 3PE . . . Z 25 150.731 270.87 181.688 1 20 0 C38 3PE 701 L 1 
HETATM 22 C C39 3PE . . . Z 25 149.537 269.942 181.827 1 20 0 C39 3PE 701 L 1 
HETATM 23 O O21 3PE . . . Z 25 149.411 277.976 172.177 1 20 0 O21 3PE 701 L 1 
HETATM 24 O O22 3PE . . . Z 25 151.245 279.406 172.22 1 20 0 O22 3PE 701 L 1 
HETATM 25 C C21 3PE . . . Z 25 150.038 279.288 172.161 1 20 0 C21 3PE 701 L 1 
HETATM 26 C C22 3PE . . . Z 25 149.173 280.517 172.073 1 20 0 C22 3PE 701 L 1 
HETATM 27 C C23 3PE . . . Z 25 149.352 281.348 173.332 1 20 0 C23 3PE 701 L 1 
HETATM 28 C C24 3PE . . . Z 25 148.709 280.659 174.518 1 20 0 C24 3PE 701 L 1 
HETATM 29 C C25 3PE . . . Z 25 148.945 281.46 175.786 1 20 0 C25 3PE 701 L 1 
HETATM 30 C C26 3PE . . . Z 25 148.006 281.013 176.896 1 20 0 C26 3PE 701 L 1 
HETATM 31 C C27 3PE . . . Z 25 148.003 279.499 177.031 1 20 0 C27 3PE 701 L 1 
HETATM 32 C C28 3PE . . . Z 25 147.161 279.056 178.211 1 20 0 C28 3PE 701 L 1 
HETATM 33 C C29 3PE . . . Z 25 146.806 277.593 178.032 1 20 0 C29 3PE 701 L 1 
HETATM 34 C C2A 3PE . . . Z 25 146.027 277.062 179.221 1 20 0 C2A 3PE 701 L 1 
HETATM 35 C C2B 3PE . . . Z 25 145.642 275.616 178.972 1 20 0 C2B 3PE 701 L 1 
HETATM 36 C C2C 3PE . . . Z 25 145.255 274.934 180.272 1 20 0 C2C 3PE 701 L 1 
HETATM 37 C C2D 3PE . . . Z 25 144.956 273.47 180.006 1 20 0 C2D 3PE 701 L 1 
HETATM 38 C C2E 3PE . . . Z 25 144.651 272.725 181.295 1 20 0 C2E 3PE 701 L 1 
HETATM 39 C C2F 3PE . . . Z 25 145.89 272.612 182.166 1 20 0 C2F 3PE 701 L 1 
HETATM 40 C C2G 3PE . . . Z 25 145.699 271.507 183.189 1 20 0 C2G 3PE 701 L 1 
HETATM 41 C C2H 3PE . . . Z 25 146.936 271.358 184.056 1 20 0 C2H 3PE 701 L 1 
HETATM 42 C C2I 3PE . . . Z 25 146.787 270.17 184.974 1 20 0 C2I 3PE 701 L 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           28 
_model_server_stats.create_model_time_ms    40 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           42 
#