data_8IB6 # _model_server_result.job_id xbY1giaikBkQ_MJTtpKbDQ _model_server_result.datetime_utc '2024-11-05 05:01:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ib6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"FA","auth_seq_id":707}' # _entry.id 8IB6 # _exptl.entry_id 8IB6 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 748.065 _entity.id 25 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-Distearoyl-sn-glycerophosphoethanolamine _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 24-meric _pdbx_struct_assembly.oligomeric_count 24 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 25 Y N N ? 25 Z N N ? 25 AA N N ? 25 BA N N ? 25 CA N N ? 25 FA N N ? 25 GA N N ? 25 HA N N ? 25 IA N N ? 25 JA N N ? 25 KA N N ? 25 NA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 J SG CYS 20 Y CYS 20 1_555 J SG CYS 77 Y CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf2 J SG CYS 97 Y CYS 97 1_555 J SG CYS 117 Y CYS 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? disulf ? disulf3 M SG CYS 33 e CYS 33 1_555 M SG CYS 66 e CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf4 M SG CYS 43 e CYS 43 1_555 M SG CYS 56 e CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf5 W SG CYS 59 o CYS 59 1_555 W SG CYS 90 o CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf6 W SG CYS 69 o CYS 69 1_555 W SG CYS 80 o CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? disulf ? disulf7 X SG CYS 77 p CYS 77 1_555 X SG CYS 84 p CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf8 X SG CYS 113 p CYS 113 1_555 X SG CYS 125 p CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? # _chem_comp.formula 'C41 H82 N O8 P' _chem_comp.formula_weight 748.065 _chem_comp.id 3PE _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-Distearoyl-sn-glycerophosphoethanolamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-SN-PHOSPHATIDYLETHANOLAMINE;1,2-DIACYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O11 3PE sing 1 n n P O12 3PE sing 2 n n P O13 3PE sing 3 n n P O14 3PE doub 4 n n N C12 3PE sing 5 n n N HN1 3PE sing 6 n n N HN2 3PE sing 7 n n O11 C1 3PE sing 8 n n O13 C11 3PE sing 9 n n C11 C12 3PE sing 10 n n C11 H111 3PE sing 11 n n C11 H112 3PE sing 12 n n C12 H121 3PE sing 13 n n C12 H122 3PE sing 14 n n C1 C2 3PE sing 15 n n C1 H11 3PE sing 16 n n C1 H12 3PE sing 17 n n C2 C3 3PE sing 18 n n C2 O21 3PE sing 19 n n C2 H2 3PE sing 20 n n C3 O31 3PE sing 21 n n C3 H31 3PE sing 22 n n C3 H32 3PE sing 23 n n O31 C31 3PE sing 24 n n O32 C31 3PE doub 25 n n C31 C32 3PE sing 26 n n C32 C33 3PE sing 27 n n C32 H321 3PE sing 28 n n C32 H322 3PE sing 29 n n C33 C34 3PE sing 30 n n C33 H331 3PE sing 31 n n C33 H332 3PE sing 32 n n C34 C35 3PE sing 33 n n C34 H341 3PE sing 34 n n C34 H342 3PE sing 35 n n C35 C36 3PE sing 36 n n C35 H351 3PE sing 37 n n C35 H352 3PE sing 38 n n C36 C37 3PE sing 39 n n C36 H361 3PE sing 40 n n C36 H362 3PE sing 41 n n C37 C38 3PE sing 42 n n C37 H371 3PE sing 43 n n C37 H372 3PE sing 44 n n C38 C39 3PE sing 45 n n C38 H381 3PE sing 46 n n C38 H382 3PE sing 47 n n C39 C3A 3PE sing 48 n n C39 H391 3PE sing 49 n n C39 H392 3PE sing 50 n n C3A C3B 3PE sing 51 n n C3A H3A1 3PE sing 52 n n C3A H3A2 3PE sing 53 n n C3B C3C 3PE sing 54 n n C3B H3B1 3PE sing 55 n n C3B H3B2 3PE sing 56 n n C3C C3D 3PE sing 57 n n C3C H3C1 3PE sing 58 n n C3C H3C2 3PE sing 59 n n C3D C3E 3PE sing 60 n n C3D H3D1 3PE sing 61 n n C3D H3D2 3PE sing 62 n n C3E C3F 3PE sing 63 n n C3E H3E1 3PE sing 64 n n C3E H3E2 3PE sing 65 n n C3F C3G 3PE sing 66 n n C3F H3F1 3PE sing 67 n n C3F H3F2 3PE sing 68 n n C3G C3H 3PE sing 69 n n C3G H3G1 3PE sing 70 n n C3G H3G2 3PE sing 71 n n C3H C3I 3PE sing 72 n n C3H H3H1 3PE sing 73 n n C3H H3H2 3PE sing 74 n n C3I H3I1 3PE sing 75 n n C3I H3I2 3PE sing 76 n n C3I H3I3 3PE sing 77 n n O21 C21 3PE sing 78 n n O22 C21 3PE doub 79 n n C21 C22 3PE sing 80 n n C22 C23 3PE sing 81 n n C22 H221 3PE sing 82 n n C22 H222 3PE sing 83 n n C23 C24 3PE sing 84 n n C23 H231 3PE sing 85 n n C23 H232 3PE sing 86 n n C24 C25 3PE sing 87 n n C24 H241 3PE sing 88 n n C24 H242 3PE sing 89 n n C25 C26 3PE sing 90 n n C25 H251 3PE sing 91 n n C25 H252 3PE sing 92 n n C26 C27 3PE sing 93 n n C26 H261 3PE sing 94 n n C26 H262 3PE sing 95 n n C27 C28 3PE sing 96 n n C27 H271 3PE sing 97 n n C27 H272 3PE sing 98 n n C28 C29 3PE sing 99 n n C28 H281 3PE sing 100 n n C28 H282 3PE sing 101 n n C29 C2A 3PE sing 102 n n C29 H291 3PE sing 103 n n C29 H292 3PE sing 104 n n C2A C2B 3PE sing 105 n n C2A H2A1 3PE sing 106 n n C2A H2A2 3PE sing 107 n n C2B C2C 3PE sing 108 n n C2B H2B1 3PE sing 109 n n C2B H2B2 3PE sing 110 n n C2C C2D 3PE sing 111 n n C2C H2C1 3PE sing 112 n n C2C H2C2 3PE sing 113 n n C2D C2E 3PE sing 114 n n C2D H2D1 3PE sing 115 n n C2D H2D2 3PE sing 116 n n C2E C2F 3PE sing 117 n n C2E H2E1 3PE sing 118 n n C2E H2E2 3PE sing 119 n n C2F C2G 3PE sing 120 n n C2F H2F1 3PE sing 121 n n C2F H2F2 3PE sing 122 n n C2G C2H 3PE sing 123 n n C2G H2G1 3PE sing 124 n n C2G H2G2 3PE sing 125 n n C2H C2I 3PE sing 126 n n C2H H2H1 3PE sing 127 n n C2H H2H2 3PE sing 128 n n C2I H2I1 3PE sing 129 n n C2I H2I2 3PE sing 130 n n C2I H2I3 3PE sing 131 n n O12 H1 3PE sing 132 n n # _atom_sites.entry_id 8IB6 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Y 25 3PE J 1 201 203 3PE 3PE . Z 25 3PE L 1 701 699 3PE 3PE . AA 25 3PE L 1 702 700 3PE 3PE . BA 25 3PE L 1 703 701 3PE 3PE . CA 25 3PE L 1 704 703 3PE 3PE . DA 26 CDL L 1 705 704 CDL CDL . EA 26 CDL L 1 706 706 CDL CDL . FA 25 3PE L 1 707 501 3PE 3PE . GA 25 3PE M 1 501 503 3PE 3PE . HA 25 3PE M 1 502 504 3PE 3PE . IA 25 3PE M 1 503 506 3PE 3PE . JA 25 3PE N 1 401 502 3PE 3PE . KA 25 3PE O 1 401 505 3PE 3PE . LA 27 ADP O 1 402 401 ADP ADP . MA 26 CDL X 1 201 507 CDL CDL . NA 25 3PE Y 1 201 702 3PE 3PE . OA 26 CDL h 1 201 705 CDL CDL . PA 28 EHZ n 1 201 201 EHZ EHZ . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 3PE . . . FA 25 193.762 236.031 193.748 1 42.8 0 P 3PE 707 L 1 HETATM 2 N N 3PE . . . FA 25 193.445 240.292 193.258 1 42.8 0 N 3PE 707 L 1 HETATM 3 O O11 3PE . . . FA 25 192.449 235.636 192.912 1 42.8 0 O11 3PE 707 L 1 HETATM 4 O O12 3PE . . . FA 25 194.868 235.074 193.38 1 42.8 -1 O12 3PE 707 L 1 HETATM 5 O O13 3PE . . . FA 25 194.132 237.472 193.142 1 42.8 0 O13 3PE 707 L 1 HETATM 6 O O14 3PE . . . FA 25 193.363 236.211 195.192 1 42.8 0 O14 3PE 707 L 1 HETATM 7 C C11 3PE . . . FA 25 193.282 238.086 192.177 1 42.8 0 C11 3PE 707 L 1 HETATM 8 C C12 3PE . . . FA 25 193.692 239.541 191.998 1 42.8 0 C12 3PE 707 L 1 HETATM 9 C C1 3PE . . . FA 25 191.65 234.519 193.293 1 42.8 0 C1 3PE 707 L 1 HETATM 10 C C2 3PE . . . FA 25 190.722 234.196 192.136 1 42.8 0 C2 3PE 707 L 1 HETATM 11 C C3 3PE . . . FA 25 189.916 235.434 191.778 1 42.8 0 C3 3PE 707 L 1 HETATM 12 O O31 3PE . . . FA 25 189.506 235.322 190.419 1 42.8 0 O31 3PE 707 L 1 HETATM 13 O O32 3PE . . . FA 25 187.299 235.933 190.717 1 42.8 0 O32 3PE 707 L 1 HETATM 14 C C31 3PE . . . FA 25 188.1 235.284 190.065 1 42.8 0 C31 3PE 707 L 1 HETATM 15 C C32 3PE . . . FA 25 187.663 234.431 188.9 1 42.8 0 C32 3PE 707 L 1 HETATM 16 C C33 3PE . . . FA 25 186.197 234.67 188.584 1 42.8 0 C33 3PE 707 L 1 HETATM 17 C C34 3PE . . . FA 25 185.991 236.045 187.969 1 42.8 0 C34 3PE 707 L 1 HETATM 18 C C35 3PE . . . FA 25 184.512 236.262 187.702 1 42.8 0 C35 3PE 707 L 1 HETATM 19 C C36 3PE . . . FA 25 184.014 235.196 186.741 1 42.8 0 C36 3PE 707 L 1 HETATM 20 C C37 3PE . . . FA 25 184.76 235.323 185.426 1 42.8 0 C37 3PE 707 L 1 HETATM 21 C C38 3PE . . . FA 25 184.39 234.193 184.484 1 42.8 0 C38 3PE 707 L 1 HETATM 22 C C39 3PE . . . FA 25 182.879 234.057 184.393 1 42.8 0 C39 3PE 707 L 1 HETATM 23 C C3A 3PE . . . FA 25 182.53 233.032 183.328 1 42.8 0 C3A 3PE 707 L 1 HETATM 24 C C3B 3PE . . . FA 25 181.034 232.774 183.287 1 42.8 0 C3B 3PE 707 L 1 HETATM 25 C C3C 3PE . . . FA 25 180.25 234.07 183.145 1 42.8 0 C3C 3PE 707 L 1 HETATM 26 C C3D 3PE . . . FA 25 178.816 233.738 182.768 1 42.8 0 C3D 3PE 707 L 1 HETATM 27 C C3E 3PE . . . FA 25 178.799 232.954 181.463 1 42.8 0 C3E 3PE 707 L 1 HETATM 28 C C3F 3PE . . . FA 25 177.42 232.372 181.183 1 42.8 0 C3F 3PE 707 L 1 HETATM 29 C C3G 3PE . . . FA 25 176.992 231.431 182.302 1 42.8 0 C3G 3PE 707 L 1 HETATM 30 O O21 3PE . . . FA 25 191.517 233.827 191.02 1 42.8 0 O21 3PE 707 L 1 HETATM 31 O O22 3PE . . . FA 25 191.219 231.645 191.706 1 42.8 0 O22 3PE 707 L 1 HETATM 32 C C21 3PE . . . FA 25 191.465 232.398 190.782 1 42.8 0 C21 3PE 707 L 1 HETATM 33 C C22 3PE . . . FA 25 191.7 231.873 189.391 1 42.8 0 C22 3PE 707 L 1 HETATM 34 C C23 3PE . . . FA 25 190.826 232.674 188.438 1 42.8 0 C23 3PE 707 L 1 HETATM 35 C C24 3PE . . . FA 25 191.198 232.383 186.992 1 42.8 0 C24 3PE 707 L 1 HETATM 36 C C25 3PE . . . FA 25 190.519 233.375 186.062 1 42.8 0 C25 3PE 707 L 1 HETATM 37 C C26 3PE . . . FA 25 189.021 233.124 186.006 1 42.8 0 C26 3PE 707 L 1 HETATM 38 C C27 3PE . . . FA 25 188.35 234.183 185.142 1 42.8 0 C27 3PE 707 L 1 HETATM 39 C C28 3PE . . . FA 25 188.866 234.114 183.713 1 42.8 0 C28 3PE 707 L 1 HETATM 40 C C29 3PE . . . FA 25 188.538 232.763 183.094 1 42.8 0 C29 3PE 707 L 1 HETATM 41 C C2A 3PE . . . FA 25 189.263 232.589 181.768 1 42.8 0 C2A 3PE 707 L 1 HETATM 42 C C2B 3PE . . . FA 25 188.968 231.215 181.183 1 42.8 0 C2B 3PE 707 L 1 HETATM 43 C C2C 3PE . . . FA 25 187.505 231.102 180.784 1 42.8 0 C2C 3PE 707 L 1 HETATM 44 C C2D 3PE . . . FA 25 187.22 229.72 180.217 1 42.8 0 C2D 3PE 707 L 1 HETATM 45 C C2E 3PE . . . FA 25 188.183 229.398 179.083 1 42.8 0 C2E 3PE 707 L 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 49 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 45 #