data_8IB7
#
_model_server_result.job_id            YdSkVeKDZabFs4mV5MDucw 
_model_server_result.datetime_utc      '2024-12-22 10:30:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ib7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"MA","auth_seq_id":401}' 
#
_entry.id    8IB7 
#
_exptl.entry_id    8IB7 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              618.503 
_entity.id                          16 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'HEME C' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    21-meric 
_pdbx_struct_assembly.oligomeric_count      21 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 16 BA N N 
? 16 MA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 338 AA CYS 338 1_555 A SG CYS 360 AA CYS 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? 
disulf ? disulf2 E SG CYS 222 AE CYS 222 1_555 E SG CYS 238 AE CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
disulf ? disulf3 H SG CYS 51 AH CYS 51 1_555 H SG CYS 65 AH CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf4 L SG CYS 338 Aa CYS 338 1_555 L SG CYS 360 Aa CYS 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf5 P SG CYS 222 Ae CYS 222 1_555 P SG CYS 238 Ae CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
disulf ? disulf6 S SG CYS 35 Ah CYS 35 1_555 S SG CYS 79 Ah CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf7 S SG CYS 51 Ah CYS 51 1_555 S SG CYS 65 Ah CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
metalc ? metalc1 C NE2 HIS 83 AC HIS 83 1_555 V FE HEM . AC HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? 
metalc ? metalc2 C NE2 HIS 97 AC HIS 97 1_555 W FE HEM . AC HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
metalc ? metalc3 C NE2 HIS 182 AC HIS 182 1_555 V FE HEM . AC HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? 
metalc ? metalc4 C NE2 HIS 196 AC HIS 196 1_555 W FE HEM . AC HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
metalc ? metalc5 D NE2 HIS 125 AD HIS 125 1_555 BA FE HEC . AD HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? 
metalc ? metalc6 D SD MET 244 AD MET 244 1_555 BA FE HEC . AD HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
metalc ? metalc7 N NE2 HIS 83 Ac HIS 83 1_555 GA FE HEM . Ac HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? 
metalc ? metalc8 N NE2 HIS 97 Ac HIS 97 1_555 HA FE HEM . Ac HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.775 ? 
metalc ? metalc9 N NE2 HIS 182 Ac HIS 182 1_555 GA FE HEM . Ac HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
metalc ? metalc10 N NE2 HIS 196 Ac HIS 196 1_555 HA FE HEM . Ac HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? 
metalc ? metalc11 O NE2 HIS 125 Ad HIS 125 1_555 MA FE HEC . Ad HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? 
metalc ? metalc12 O SD MET 244 Ad MET 244 1_555 MA FE HEC . Ad HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? 
#
_chem_comp.formula           'C34 H34 Fe N4 O4' 
_chem_comp.formula_weight    618.503 
_chem_comp.id                HEC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'HEME C' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
FE NA HEC sing 640 n n 
FE NB HEC sing 641 n n 
FE NC HEC sing 642 n n 
FE ND HEC sing 643 n n 
CHA C1A HEC doub 644 n n 
CHA C4D HEC sing 645 n n 
CHA HHA HEC sing 646 n n 
CHB C4A HEC doub 647 n n 
CHB C1B HEC sing 648 n n 
CHB HHB HEC sing 649 n n 
CHC C4B HEC doub 650 n n 
CHC C1C HEC sing 651 n n 
CHC HHC HEC sing 652 n n 
CHD C4C HEC doub 653 n n 
CHD C1D HEC sing 654 n n 
CHD HHD HEC sing 655 n n 
NA C1A HEC sing 656 n y 
NA C4A HEC sing 657 n y 
C1A C2A HEC sing 658 n y 
C2A C3A HEC doub 659 n y 
C2A CAA HEC sing 660 n n 
C3A C4A HEC sing 661 n y 
C3A CMA HEC sing 662 n n 
CMA HMA1 HEC sing 663 n n 
CMA HMA2 HEC sing 664 n n 
CMA HMA3 HEC sing 665 n n 
CAA CBA HEC sing 666 n n 
CAA HAA1 HEC sing 667 n n 
CAA HAA2 HEC sing 668 n n 
CBA CGA HEC sing 669 n n 
CBA HBA1 HEC sing 670 n n 
CBA HBA2 HEC sing 671 n n 
CGA O1A HEC doub 672 n n 
CGA O2A HEC sing 673 n n 
O2A H2A HEC sing 674 n n 
NB C1B HEC sing 675 n y 
NB C4B HEC sing 676 n y 
C1B C2B HEC doub 677 n y 
C2B C3B HEC sing 678 n y 
C2B CMB HEC sing 679 n n 
C3B C4B HEC sing 680 n y 
C3B CAB HEC doub 681 e n 
CMB HMB1 HEC sing 682 n n 
CMB HMB2 HEC sing 683 n n 
CMB HMB3 HEC sing 684 n n 
CAB CBB HEC sing 685 n n 
CAB HAB HEC sing 686 n n 
CBB HBB1 HEC sing 687 n n 
CBB HBB2 HEC sing 688 n n 
CBB HBB3 HEC sing 689 n n 
NC C1C HEC sing 690 n y 
NC C4C HEC sing 691 n y 
C1C C2C HEC doub 692 n y 
C2C C3C HEC sing 693 n y 
C2C CMC HEC sing 694 n n 
C3C C4C HEC sing 695 n y 
C3C CAC HEC doub 696 e n 
CMC HMC1 HEC sing 697 n n 
CMC HMC2 HEC sing 698 n n 
CMC HMC3 HEC sing 699 n n 
CAC CBC HEC sing 700 n n 
CAC HAC HEC sing 701 n n 
CBC HBC1 HEC sing 702 n n 
CBC HBC2 HEC sing 703 n n 
CBC HBC3 HEC sing 704 n n 
ND C1D HEC sing 705 n y 
ND C4D HEC sing 706 n y 
C1D C2D HEC doub 707 n y 
C2D C3D HEC sing 708 n y 
C2D CMD HEC sing 709 n n 
C3D C4D HEC doub 710 n y 
C3D CAD HEC sing 711 n n 
CMD HMD1 HEC sing 712 n n 
CMD HMD2 HEC sing 713 n n 
CMD HMD3 HEC sing 714 n n 
CAD CBD HEC sing 715 n n 
CAD HAD1 HEC sing 716 n n 
CAD HAD2 HEC sing 717 n n 
CBD CGD HEC sing 718 n n 
CBD HBD1 HEC sing 719 n n 
CBD HBD2 HEC sing 720 n n 
CGD O1D HEC doub 721 n n 
CGD O2D HEC sing 722 n n 
O2D H2D HEC sing 723 n n 
#
_atom_sites.entry_id                     8IB7 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
V 11 HEM AC 1 401 401 HEM HEM . 
W 11 HEM AC 1 402 402 HEM HEM . 
X 12 3PE AC 1 403 403 3PE 3PE . 
Y 13 U10 AC 1 404 505 U10 U10 . 
Z 14 UQ6 AC 1 405 506 UQ6 UQ6 . 
AA 15 CDL AC 1 406 103 CDL CDL . 
BA 16 HEC AD 1 401 395 HEC HEC . 
CA 17 3PH AD 1 402 400 3PH 3PH . 
DA 12 3PE AF 1 201 104 3PE 3PE . 
EA 15 CDL Aa 1 501 536 CDL CDL . 
FA 12 3PE Ac 1 401 535 3PE 3PE . 
GA 11 HEM Ac 1 402 401 HEM HEM . 
HA 11 HEM Ac 1 403 402 HEM HEM . 
IA 12 3PE Ac 1 404 403 3PE 3PE . 
JA 13 U10 Ac 1 405 505 U10 U10 . 
KA 14 UQ6 Ac 1 406 506 UQ6 UQ6 . 
LA 15 CDL Ac 1 407 102 CDL CDL . 
MA 16 HEC Ad 1 401 395 HEC HEC . 
NA 17 3PH Ad 1 402 400 3PH 3PH . 
OA 15 CDL Ag 1 101 103 CDL CDL . 
PA 12 3PE Ag 1 102 104 3PE 3PE . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE HEC . . . MA 16 138.822 185.599 156.802 1 50.59 0 FE HEC 401 Ad 1 
HETATM 2 C CHA HEC . . . MA 16 141.368 183.744 158.246 1 52.24 0 CHA HEC 401 Ad 1 
HETATM 3 C CHB HEC . . . MA 16 139.182 188.023 159.254 1 49.02 0 CHB HEC 401 Ad 1 
HETATM 4 C CHC HEC . . . MA 16 136.363 187.481 155.271 1 53.23 0 CHC HEC 401 Ad 1 
HETATM 5 C CHD HEC . . . MA 16 138.511 183.191 154.32 1 58.81 0 CHD HEC 401 Ad 1 
HETATM 6 N NA HEC . . . MA 16 140.066 185.843 158.474 1 54.58 0 NA HEC 401 Ad 1 
HETATM 7 C C1A HEC . . . MA 16 141.034 185.015 158.91 1 51.4 0 C1A HEC 401 Ad 1 
HETATM 8 C C2A HEC . . . MA 16 141.75 185.466 160.127 1 52.28 0 C2A HEC 401 Ad 1 
HETATM 9 C C3A HEC . . . MA 16 141.1 186.747 160.429 1 53.47 0 C3A HEC 401 Ad 1 
HETATM 10 C C4A HEC . . . MA 16 140.091 186.866 159.348 1 51.86 0 C4A HEC 401 Ad 1 
HETATM 11 C CMA HEC . . . MA 16 141.385 187.696 161.56 1 40.97 0 CMA HEC 401 Ad 1 
HETATM 12 C CAA HEC . . . MA 16 142.865 184.776 160.865 1 56.01 0 CAA HEC 401 Ad 1 
HETATM 13 C CBA HEC . . . MA 16 144.079 184.603 159.966 1 58.51 0 CBA HEC 401 Ad 1 
HETATM 14 C CGA HEC . . . MA 16 145.117 183.831 160.739 1 62.81 0 CGA HEC 401 Ad 1 
HETATM 15 O O1A HEC . . . MA 16 144.739 182.855 161.416 1 63.66 0 O1A HEC 401 Ad 1 
HETATM 16 O O2A HEC . . . MA 16 146.307 184.196 160.68 1 67.24 0 O2A HEC 401 Ad 1 
HETATM 17 N NB HEC . . . MA 16 137.918 187.448 157.203 1 53 0 NB HEC 401 Ad 1 
HETATM 18 C C1B HEC . . . MA 16 138.182 188.309 158.21 1 51.39 0 C1B HEC 401 Ad 1 
HETATM 19 C C2B HEC . . . MA 16 137.382 189.563 158.201 1 53.29 0 C2B HEC 401 Ad 1 
HETATM 20 C C3B HEC . . . MA 16 136.567 189.368 157.003 1 55.98 0 C3B HEC 401 Ad 1 
HETATM 21 C C4B HEC . . . MA 16 136.975 188.06 156.472 1 51.5 0 C4B HEC 401 Ad 1 
HETATM 22 C CMB HEC . . . MA 16 137.401 190.707 159.166 1 48.95 0 CMB HEC 401 Ad 1 
HETATM 23 C CAB HEC . . . MA 16 135.549 190.261 156.402 1 53.82 0 CAB HEC 401 Ad 1 
HETATM 24 C CBB HEC . . . MA 16 135.174 191.602 156.991 1 31.46 0 CBB HEC 401 Ad 1 
HETATM 25 N NC HEC . . . MA 16 137.614 185.367 155.095 1 57.03 0 NC HEC 401 Ad 1 
HETATM 26 C C1C HEC . . . MA 16 136.684 186.214 154.613 1 54.55 0 C1C HEC 401 Ad 1 
HETATM 27 C C2C HEC . . . MA 16 135.992 185.8 153.368 1 52.87 0 C2C HEC 401 Ad 1 
HETATM 28 C C3C HEC . . . MA 16 136.654 184.517 153.102 1 58.57 0 C3C HEC 401 Ad 1 
HETATM 29 C C4C HEC . . . MA 16 137.621 184.355 154.207 1 59.92 0 C4C HEC 401 Ad 1 
HETATM 30 C CMC HEC . . . MA 16 134.914 186.531 152.615 1 31.67 0 CMC HEC 401 Ad 1 
HETATM 31 C CAC HEC . . . MA 16 136.441 183.561 151.987 1 58.17 0 CAC HEC 401 Ad 1 
HETATM 32 C CBC HEC . . . MA 16 135.42 183.81 150.902 1 54.91 0 CBC HEC 401 Ad 1 
HETATM 33 N ND HEC . . . MA 16 139.765 183.778 156.375 1 54.29 0 ND HEC 401 Ad 1 
HETATM 34 C C1D HEC . . . MA 16 139.504 182.945 155.361 1 58.05 0 C1D HEC 401 Ad 1 
HETATM 35 C C2D HEC . . . MA 16 140.332 181.743 155.282 1 57.84 0 C2D HEC 401 Ad 1 
HETATM 36 C C3D HEC . . . MA 16 141.199 181.876 156.456 1 57.65 0 C3D HEC 401 Ad 1 
HETATM 37 C C4D HEC . . . MA 16 140.767 183.173 157.034 1 56.74 0 C4D HEC 401 Ad 1 
HETATM 38 C CMD HEC . . . MA 16 140.221 180.68 154.235 1 47.9 0 CMD HEC 401 Ad 1 
HETATM 39 C CAD HEC . . . MA 16 142.28 180.938 156.902 1 53.35 0 CAD HEC 401 Ad 1 
HETATM 40 C CBD HEC . . . MA 16 143.303 180.996 155.776 1 49.78 0 CBD HEC 401 Ad 1 
HETATM 41 C CGD HEC . . . MA 16 144.691 180.816 156.322 1 54.81 0 CGD HEC 401 Ad 1 
HETATM 42 O O1D HEC . . . MA 16 145.608 180.535 155.52 1 59.37 0 O1D HEC 401 Ad 1 
HETATM 43 O O2D HEC . . . MA 16 144.861 180.962 157.55 1 57.75 0 O2D HEC 401 Ad 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           187 
_model_server_stats.create_model_time_ms    261 
_model_server_stats.query_time_ms           352 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           43 
#