data_8IB7 # _model_server_result.job_id ucT2-369aIa8eri_AgGelg _model_server_result.datetime_utc '2025-03-11 13:18:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ib7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"GA","auth_seq_id":402}' # _entry.id 8IB7 # _exptl.entry_id 8IB7 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 616.487 _entity.id 11 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 21-meric _pdbx_struct_assembly.oligomeric_count 21 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 11 V N N ? 11 W N N ? 11 GA N N ? 11 HA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 338 AA CYS 338 1_555 A SG CYS 360 AA CYS 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? disulf ? disulf2 E SG CYS 222 AE CYS 222 1_555 E SG CYS 238 AE CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf3 H SG CYS 51 AH CYS 51 1_555 H SG CYS 65 AH CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 L SG CYS 338 Aa CYS 338 1_555 L SG CYS 360 Aa CYS 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 P SG CYS 222 Ae CYS 222 1_555 P SG CYS 238 Ae CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf6 S SG CYS 35 Ah CYS 35 1_555 S SG CYS 79 Ah CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf7 S SG CYS 51 Ah CYS 51 1_555 S SG CYS 65 Ah CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc1 C NE2 HIS 83 AC HIS 83 1_555 V FE HEM . AC HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? metalc ? metalc2 C NE2 HIS 97 AC HIS 97 1_555 W FE HEM . AC HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc3 C NE2 HIS 182 AC HIS 182 1_555 V FE HEM . AC HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc4 C NE2 HIS 196 AC HIS 196 1_555 W FE HEM . AC HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc5 D NE2 HIS 125 AD HIS 125 1_555 BA FE HEC . AD HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc6 D SD MET 244 AD MET 244 1_555 BA FE HEC . AD HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc7 N NE2 HIS 83 Ac HIS 83 1_555 GA FE HEM . Ac HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc8 N NE2 HIS 97 Ac HIS 97 1_555 HA FE HEM . Ac HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.775 ? metalc ? metalc9 N NE2 HIS 182 Ac HIS 182 1_555 GA FE HEM . Ac HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc10 N NE2 HIS 196 Ac HIS 196 1_555 HA FE HEM . Ac HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? metalc ? metalc11 O NE2 HIS 125 Ad HIS 125 1_555 MA FE HEC . Ad HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc12 O SD MET 244 Ad MET 244 1_555 MA FE HEC . Ad HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 724 n n CHA C4D HEM doub 725 n n CHA HHA HEM sing 726 n n CHB C4A HEM sing 727 n n CHB C1B HEM doub 728 n n CHB HHB HEM sing 729 n n CHC C4B HEM sing 730 n n CHC C1C HEM doub 731 n n CHC HHC HEM sing 732 n n CHD C4C HEM doub 733 n n CHD C1D HEM sing 734 n n CHD HHD HEM sing 735 n n C1A C2A HEM doub 736 n y C1A NA HEM sing 737 n y C2A C3A HEM sing 738 n y C2A CAA HEM sing 739 n n C3A C4A HEM doub 740 n y C3A CMA HEM sing 741 n n C4A NA HEM sing 742 n y CMA HMA HEM sing 743 n n CMA HMAA HEM sing 744 n n CMA HMAB HEM sing 745 n n CAA CBA HEM sing 746 n n CAA HAA HEM sing 747 n n CAA HAAA HEM sing 748 n n CBA CGA HEM sing 749 n n CBA HBA HEM sing 750 n n CBA HBAA HEM sing 751 n n CGA O1A HEM doub 752 n n CGA O2A HEM sing 753 n n C1B C2B HEM sing 754 n n C1B NB HEM sing 755 n n C2B C3B HEM doub 756 n n C2B CMB HEM sing 757 n n C3B C4B HEM sing 758 n n C3B CAB HEM sing 759 n n C4B NB HEM doub 760 n n CMB HMB HEM sing 761 n n CMB HMBA HEM sing 762 n n CMB HMBB HEM sing 763 n n CAB CBB HEM doub 764 n n CAB HAB HEM sing 765 n n CBB HBB HEM sing 766 n n CBB HBBA HEM sing 767 n n C1C C2C HEM sing 768 n y C1C NC HEM sing 769 n y C2C C3C HEM doub 770 n y C2C CMC HEM sing 771 n n C3C C4C HEM sing 772 n y C3C CAC HEM sing 773 n n C4C NC HEM sing 774 n y CMC HMC HEM sing 775 n n CMC HMCA HEM sing 776 n n CMC HMCB HEM sing 777 n n CAC CBC HEM doub 778 n n CAC HAC HEM sing 779 n n CBC HBC HEM sing 780 n n CBC HBCA HEM sing 781 n n C1D C2D HEM sing 782 n n C1D ND HEM doub 783 n n C2D C3D HEM doub 784 n n C2D CMD HEM sing 785 n n C3D C4D HEM sing 786 n n C3D CAD HEM sing 787 n n C4D ND HEM sing 788 n n CMD HMD HEM sing 789 n n CMD HMDA HEM sing 790 n n CMD HMDB HEM sing 791 n n CAD CBD HEM sing 792 n n CAD HAD HEM sing 793 n n CAD HADA HEM sing 794 n n CBD CGD HEM sing 795 n n CBD HBD HEM sing 796 n n CBD HBDA HEM sing 797 n n CGD O1D HEM doub 798 n n CGD O2D HEM sing 799 n n O2A H2A HEM sing 800 n n O2D H2D HEM sing 801 n n FE NA HEM sing 802 n n FE NB HEM sing 803 n n FE NC HEM sing 804 n n FE ND HEM sing 805 n n # _atom_sites.entry_id 8IB7 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code V 11 HEM AC 1 401 401 HEM HEM . W 11 HEM AC 1 402 402 HEM HEM . X 12 3PE AC 1 403 403 3PE 3PE . Y 13 U10 AC 1 404 505 U10 U10 . Z 14 UQ6 AC 1 405 506 UQ6 UQ6 . AA 15 CDL AC 1 406 103 CDL CDL . BA 16 HEC AD 1 401 395 HEC HEC . CA 17 3PH AD 1 402 400 3PH 3PH . DA 12 3PE AF 1 201 104 3PE 3PE . EA 15 CDL Aa 1 501 536 CDL CDL . FA 12 3PE Ac 1 401 535 3PE 3PE . GA 11 HEM Ac 1 402 401 HEM HEM . HA 11 HEM Ac 1 403 402 HEM HEM . IA 12 3PE Ac 1 404 403 3PE 3PE . JA 13 U10 Ac 1 405 505 U10 U10 . KA 14 UQ6 Ac 1 406 506 UQ6 UQ6 . LA 15 CDL Ac 1 407 102 CDL CDL . MA 16 HEC Ad 1 401 395 HEC HEC . NA 17 3PH Ad 1 402 400 3PH 3PH . OA 15 CDL Ag 1 101 103 CDL CDL . PA 12 3PE Ag 1 102 104 3PE 3PE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . GA 11 143.514 175.731 186.08 1 36.62 0 CHA HEM 402 Ac 1 HETATM 2 C CHB HEM . . . GA 11 141.401 173.771 190 1 29.58 0 CHB HEM 402 Ac 1 HETATM 3 C CHC HEM . . . GA 11 145.367 174.738 192.651 1 32.52 0 CHC HEM 402 Ac 1 HETATM 4 C CHD HEM . . . GA 11 147.486 176.555 188.708 1 24.05 0 CHD HEM 402 Ac 1 HETATM 5 C C1A HEM . . . GA 11 142.638 175.088 186.915 1 49.3 0 C1A HEM 402 Ac 1 HETATM 6 C C2A HEM . . . GA 11 141.42 174.547 186.477 1 35.8 0 C2A HEM 402 Ac 1 HETATM 7 C C3A HEM . . . GA 11 140.816 173.993 187.562 1 35.96 0 C3A HEM 402 Ac 1 HETATM 8 C C4A HEM . . . GA 11 141.649 174.189 188.693 1 36.75 0 C4A HEM 402 Ac 1 HETATM 9 C CMA HEM . . . GA 11 139.484 173.292 187.539 1 36.63 0 CMA HEM 402 Ac 1 HETATM 10 C CAA HEM . . . GA 11 140.901 174.568 185.063 1 44.31 0 CAA HEM 402 Ac 1 HETATM 11 C CBA HEM . . . GA 11 140.052 175.815 184.809 1 44.71 0 CBA HEM 402 Ac 1 HETATM 12 C CGA HEM . . . GA 11 140.847 176.837 184.043 1 48.38 0 CGA HEM 402 Ac 1 HETATM 13 O O1A HEM . . . GA 11 141.997 176.562 183.632 1 53.33 0 O1A HEM 402 Ac 1 HETATM 14 O O2A HEM . . . GA 11 140.351 177.961 183.81 1 53.28 0 O2A HEM 402 Ac 1 HETATM 15 C C1B HEM . . . GA 11 142.336 173.881 191.056 1 32.48 0 C1B HEM 402 Ac 1 HETATM 16 C C2B HEM . . . GA 11 142.089 173.415 192.392 1 24.66 0 C2B HEM 402 Ac 1 HETATM 17 C C3B HEM . . . GA 11 143.197 173.652 193.191 1 33.73 0 C3B HEM 402 Ac 1 HETATM 18 C C4B HEM . . . GA 11 144.12 174.315 192.232 1 32.62 0 C4B HEM 402 Ac 1 HETATM 19 C CMB HEM . . . GA 11 140.8 172.759 192.809 1 11.9 0 CMB HEM 402 Ac 1 HETATM 20 C CAB HEM . . . GA 11 143.383 173.366 194.621 1 43.91 0 CAB HEM 402 Ac 1 HETATM 21 C CBB HEM . . . GA 11 142.823 172.301 195.177 1 50.9 0 CBB HEM 402 Ac 1 HETATM 22 C C1C HEM . . . GA 11 146.282 175.279 191.782 1 29.36 0 C1C HEM 402 Ac 1 HETATM 23 C C2C HEM . . . GA 11 147.588 175.586 192.138 1 31.24 0 C2C HEM 402 Ac 1 HETATM 24 C C3C HEM . . . GA 11 148.192 176.103 191.018 1 27.8 0 C3C HEM 402 Ac 1 HETATM 25 C C4C HEM . . . GA 11 147.241 176.109 189.974 1 33.04 0 C4C HEM 402 Ac 1 HETATM 26 C CMC HEM . . . GA 11 148.202 175.375 193.493 1 26.35 0 CMC HEM 402 Ac 1 HETATM 27 C CAC HEM . . . GA 11 149.578 176.555 190.924 1 33.29 0 CAC HEM 402 Ac 1 HETATM 28 C CBC HEM . . . GA 11 150.542 175.658 191.071 1 33.63 0 CBC HEM 402 Ac 1 HETATM 29 C C1D HEM . . . GA 11 146.535 176.457 187.7 1 31.51 0 C1D HEM 402 Ac 1 HETATM 30 C C2D HEM . . . GA 11 146.843 176.924 186.35 1 32.6 0 C2D HEM 402 Ac 1 HETATM 31 C C3D HEM . . . GA 11 145.747 176.697 185.62 1 29.78 0 C3D HEM 402 Ac 1 HETATM 32 C C4D HEM . . . GA 11 144.771 176.089 186.526 1 34.15 0 C4D HEM 402 Ac 1 HETATM 33 C CMD HEM . . . GA 11 148.134 177.537 185.881 1 24.17 0 CMD HEM 402 Ac 1 HETATM 34 C CAD HEM . . . GA 11 145.558 177.012 184.163 1 32.52 0 CAD HEM 402 Ac 1 HETATM 35 C CBD HEM . . . GA 11 145.224 178.497 184.045 1 45.02 0 CBD HEM 402 Ac 1 HETATM 36 C CGD HEM . . . GA 11 144.866 178.835 182.625 1 47.94 0 CGD HEM 402 Ac 1 HETATM 37 O O1D HEM . . . GA 11 145.545 179.674 181.995 1 53.35 0 O1D HEM 402 Ac 1 HETATM 38 O O2D HEM . . . GA 11 143.888 178.28 182.079 1 51.57 0 O2D HEM 402 Ac 1 HETATM 39 N NA HEM . . . GA 11 142.756 174.881 188.276 1 44.42 0 NA HEM 402 Ac 1 HETATM 40 N NB HEM . . . GA 11 143.56 174.406 190.998 1 32.01 0 NB HEM 402 Ac 1 HETATM 41 N NC HEM . . . GA 11 146.07 175.633 190.482 1 47.54 0 NC HEM 402 Ac 1 HETATM 42 N ND HEM . . . GA 11 145.294 175.96 187.753 1 30.58 0 ND HEM 402 Ac 1 HETATM 43 FE FE HEM . . . GA 11 144.438 175.243 189.26 1 13.23 0 FE HEM 402 Ac 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 48 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #