data_8IB7 # _model_server_result.job_id x20A5ZiB3oaTPFN9C-VT7Q _model_server_result.datetime_utc '2024-12-22 10:01:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ib7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"JA","auth_seq_id":405}' # _entry.id 8IB7 # _exptl.entry_id 8IB7 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 863.343 _entity.id 13 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description UBIQUINONE-10 _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 21-meric _pdbx_struct_assembly.oligomeric_count 21 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 13 Y N N ? 13 JA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 338 AA CYS 338 1_555 A SG CYS 360 AA CYS 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? disulf ? disulf2 E SG CYS 222 AE CYS 222 1_555 E SG CYS 238 AE CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf3 H SG CYS 51 AH CYS 51 1_555 H SG CYS 65 AH CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 L SG CYS 338 Aa CYS 338 1_555 L SG CYS 360 Aa CYS 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 P SG CYS 222 Ae CYS 222 1_555 P SG CYS 238 Ae CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf6 S SG CYS 35 Ah CYS 35 1_555 S SG CYS 79 Ah CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf7 S SG CYS 51 Ah CYS 51 1_555 S SG CYS 65 Ah CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc1 C NE2 HIS 83 AC HIS 83 1_555 V FE HEM . AC HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? metalc ? metalc2 C NE2 HIS 97 AC HIS 97 1_555 W FE HEM . AC HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc3 C NE2 HIS 182 AC HIS 182 1_555 V FE HEM . AC HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc4 C NE2 HIS 196 AC HIS 196 1_555 W FE HEM . AC HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc5 D NE2 HIS 125 AD HIS 125 1_555 BA FE HEC . AD HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc6 D SD MET 244 AD MET 244 1_555 BA FE HEC . AD HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc7 N NE2 HIS 83 Ac HIS 83 1_555 GA FE HEM . Ac HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc8 N NE2 HIS 97 Ac HIS 97 1_555 HA FE HEM . Ac HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.775 ? metalc ? metalc9 N NE2 HIS 182 Ac HIS 182 1_555 GA FE HEM . Ac HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc10 N NE2 HIS 196 Ac HIS 196 1_555 HA FE HEM . Ac HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? metalc ? metalc11 O NE2 HIS 125 Ad HIS 125 1_555 MA FE HEC . Ad HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc12 O SD MET 244 Ad MET 244 1_555 MA FE HEC . Ad HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? # _chem_comp.formula 'C59 H90 O4' _chem_comp.formula_weight 863.343 _chem_comp.id U10 _chem_comp.mon_nstd_flag . _chem_comp.name UBIQUINONE-10 _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Coenzyme Q10' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 U10 sing 1033 n n C1 C6 U10 doub 1034 n n C1 C1M U10 sing 1035 n n C2 C3 U10 sing 1036 n n C2 O2 U10 doub 1037 n n C3 C4 U10 doub 1038 n n C3 O3 U10 sing 1039 n n C4 C5 U10 sing 1040 n n C4 O4 U10 sing 1041 n n C5 C6 U10 sing 1042 n n C5 O5 U10 doub 1043 n n C6 C7 U10 sing 1044 n n C1M H1M1 U10 sing 1045 n n C1M H1M2 U10 sing 1046 n n C1M H1M3 U10 sing 1047 n n C3M O3 U10 sing 1048 n n C3M H3M1 U10 sing 1049 n n C3M H3M2 U10 sing 1050 n n C3M H3M3 U10 sing 1051 n n C4M O4 U10 sing 1052 n n C4M H4M1 U10 sing 1053 n n C4M H4M2 U10 sing 1054 n n C4M H4M3 U10 sing 1055 n n C7 C8 U10 sing 1056 n n C7 H71 U10 sing 1057 n n C7 H72 U10 sing 1058 n n C8 C9 U10 doub 1059 e n C8 H8 U10 sing 1060 n n C9 C10 U10 sing 1061 n n C9 C11 U10 sing 1062 n n C10 H101 U10 sing 1063 n n C10 H102 U10 sing 1064 n n C10 H103 U10 sing 1065 n n C11 C12 U10 sing 1066 n n C11 H111 U10 sing 1067 n n C11 H112 U10 sing 1068 n n C12 C13 U10 sing 1069 n n C12 H121 U10 sing 1070 n n C12 H122 U10 sing 1071 n n C13 C14 U10 doub 1072 e n C13 H13 U10 sing 1073 n n C14 C15 U10 sing 1074 n n C14 C16 U10 sing 1075 n n C15 H151 U10 sing 1076 n n C15 H152 U10 sing 1077 n n C15 H153 U10 sing 1078 n n C16 C17 U10 sing 1079 n n C16 H161 U10 sing 1080 n n C16 H162 U10 sing 1081 n n C17 C18 U10 sing 1082 n n C17 H171 U10 sing 1083 n n C17 H172 U10 sing 1084 n n C18 C19 U10 doub 1085 e n C18 H18 U10 sing 1086 n n C19 C20 U10 sing 1087 n n C19 C21 U10 sing 1088 n n C20 H201 U10 sing 1089 n n C20 H202 U10 sing 1090 n n C20 H203 U10 sing 1091 n n C21 C22 U10 sing 1092 n n C21 H211 U10 sing 1093 n n C21 H212 U10 sing 1094 n n C22 C23 U10 sing 1095 n n C22 H221 U10 sing 1096 n n C22 H222 U10 sing 1097 n n C23 C24 U10 doub 1098 e n C23 H23 U10 sing 1099 n n C24 C25 U10 sing 1100 n n C24 C26 U10 sing 1101 n n C25 H251 U10 sing 1102 n n C25 H252 U10 sing 1103 n n C25 H253 U10 sing 1104 n n C26 C27 U10 sing 1105 n n C26 H261 U10 sing 1106 n n C26 H262 U10 sing 1107 n n C27 C28 U10 sing 1108 n n C27 H271 U10 sing 1109 n n C27 H272 U10 sing 1110 n n C28 C29 U10 doub 1111 e n C28 H28 U10 sing 1112 n n C29 C30 U10 sing 1113 n n C29 C31 U10 sing 1114 n n C30 H301 U10 sing 1115 n n C30 H302 U10 sing 1116 n n C30 H303 U10 sing 1117 n n C31 C32 U10 sing 1118 n n C31 H311 U10 sing 1119 n n C31 H312 U10 sing 1120 n n C32 C33 U10 sing 1121 n n C32 H321 U10 sing 1122 n n C32 H322 U10 sing 1123 n n C33 C34 U10 doub 1124 e n C33 H33 U10 sing 1125 n n C34 C35 U10 sing 1126 n n C34 C36 U10 sing 1127 n n C35 H351 U10 sing 1128 n n C35 H352 U10 sing 1129 n n C35 H353 U10 sing 1130 n n C36 C37 U10 sing 1131 n n C36 H361 U10 sing 1132 n n C36 H362 U10 sing 1133 n n C37 C38 U10 sing 1134 n n C37 H371 U10 sing 1135 n n C37 H372 U10 sing 1136 n n C38 C39 U10 doub 1137 e n C38 H38 U10 sing 1138 n n C39 C40 U10 sing 1139 n n C39 C41 U10 sing 1140 n n C40 H401 U10 sing 1141 n n C40 H402 U10 sing 1142 n n C40 H403 U10 sing 1143 n n C41 C42 U10 sing 1144 n n C41 H411 U10 sing 1145 n n C41 H412 U10 sing 1146 n n C42 C43 U10 sing 1147 n n C42 H421 U10 sing 1148 n n C42 H422 U10 sing 1149 n n C43 C44 U10 doub 1150 e n C43 H43 U10 sing 1151 n n C44 C45 U10 sing 1152 n n C44 C46 U10 sing 1153 n n C45 H451 U10 sing 1154 n n C45 H452 U10 sing 1155 n n C45 H453 U10 sing 1156 n n C46 C47 U10 sing 1157 n n C46 H461 U10 sing 1158 n n C46 H462 U10 sing 1159 n n C47 C48 U10 sing 1160 n n C47 H471 U10 sing 1161 n n C47 H472 U10 sing 1162 n n C48 C49 U10 doub 1163 e n C48 H48 U10 sing 1164 n n C49 C50 U10 sing 1165 n n C49 C51 U10 sing 1166 n n C50 H501 U10 sing 1167 n n C50 H502 U10 sing 1168 n n C50 H503 U10 sing 1169 n n C51 C52 U10 sing 1170 n n C51 H511 U10 sing 1171 n n C51 H512 U10 sing 1172 n n C52 C53 U10 sing 1173 n n C52 H521 U10 sing 1174 n n C52 H522 U10 sing 1175 n n C53 C54 U10 doub 1176 n n C53 H53 U10 sing 1177 n n C54 C55 U10 sing 1178 n n C54 C56 U10 sing 1179 n n C55 H551 U10 sing 1180 n n C55 H552 U10 sing 1181 n n C55 H553 U10 sing 1182 n n C56 H561 U10 sing 1183 n n C56 H562 U10 sing 1184 n n C56 H563 U10 sing 1185 n n # _atom_sites.entry_id 8IB7 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code V 11 HEM AC 1 401 401 HEM HEM . W 11 HEM AC 1 402 402 HEM HEM . X 12 3PE AC 1 403 403 3PE 3PE . Y 13 U10 AC 1 404 505 U10 U10 . Z 14 UQ6 AC 1 405 506 UQ6 UQ6 . AA 15 CDL AC 1 406 103 CDL CDL . BA 16 HEC AD 1 401 395 HEC HEC . CA 17 3PH AD 1 402 400 3PH 3PH . DA 12 3PE AF 1 201 104 3PE 3PE . EA 15 CDL Aa 1 501 536 CDL CDL . FA 12 3PE Ac 1 401 535 3PE 3PE . GA 11 HEM Ac 1 402 401 HEM HEM . HA 11 HEM Ac 1 403 402 HEM HEM . IA 12 3PE Ac 1 404 403 3PE 3PE . JA 13 U10 Ac 1 405 505 U10 U10 . KA 14 UQ6 Ac 1 406 506 UQ6 UQ6 . LA 15 CDL Ac 1 407 102 CDL CDL . MA 16 HEC Ad 1 401 395 HEC HEC . NA 17 3PH Ad 1 402 400 3PH 3PH . OA 15 CDL Ag 1 101 103 CDL CDL . PA 12 3PE Ag 1 102 104 3PE 3PE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 U10 . . . JA 13 159.535 170.991 184.73 1 20 0 C1 U10 405 Ac 1 HETATM 2 C C2 U10 . . . JA 13 159.888 171.816 183.548 1 20 0 C2 U10 405 Ac 1 HETATM 3 C C3 U10 . . . JA 13 158.878 172.077 182.491 1 20 0 C3 U10 405 Ac 1 HETATM 4 C C4 U10 . . . JA 13 157.513 171.515 182.631 1 20 0 C4 U10 405 Ac 1 HETATM 5 C C5 U10 . . . JA 13 157.158 170.691 183.812 1 20 0 C5 U10 405 Ac 1 HETATM 6 C C6 U10 . . . JA 13 158.171 170.425 184.867 1 20 0 C6 U10 405 Ac 1 HETATM 7 C C1M U10 . . . JA 13 160.561 170.725 185.797 1 20 0 C1M U10 405 Ac 1 HETATM 8 C C3M U10 . . . JA 13 160.312 172.525 180.574 1 20 0 C3M U10 405 Ac 1 HETATM 9 C C4M U10 . . . JA 13 155.891 172.995 181.602 1 20 0 C4M U10 405 Ac 1 HETATM 10 C C7 U10 . . . JA 13 157.832 169.586 186.078 1 20 0 C7 U10 405 Ac 1 HETATM 11 C C8 U10 . . . JA 13 157.072 168.362 185.627 1 20 0 C8 U10 405 Ac 1 HETATM 12 C C9 U10 . . . JA 13 157.638 167.346 184.958 1 20 0 C9 U10 405 Ac 1 HETATM 13 C C10 U10 . . . JA 13 159.099 167.351 184.613 1 20 0 C10 U10 405 Ac 1 HETATM 14 C C11 U10 . . . JA 13 156.762 166.186 184.553 1 20 0 C11 U10 405 Ac 1 HETATM 15 C C12 U10 . . . JA 13 155.539 166.225 185.458 1 20 0 C12 U10 405 Ac 1 HETATM 16 C C13 U10 . . . JA 13 154.42 165.397 184.884 1 20 0 C13 U10 405 Ac 1 HETATM 17 C C14 U10 . . . JA 13 153.176 165.599 185.332 1 20 0 C14 U10 405 Ac 1 HETATM 18 C C15 U10 . . . JA 13 152.931 166.642 186.381 1 20 0 C15 U10 405 Ac 1 HETATM 19 C C16 U10 . . . JA 13 152.034 164.789 184.778 1 20 0 C16 U10 405 Ac 1 HETATM 20 C C17 U10 . . . JA 13 151.947 163.471 185.535 1 20 0 C17 U10 405 Ac 1 HETATM 21 C C18 U10 . . . JA 13 151.579 163.741 186.971 1 20 0 C18 U10 405 Ac 1 HETATM 22 C C19 U10 . . . JA 13 151.642 162.77 187.888 1 20 0 C19 U10 405 Ac 1 HETATM 23 C C20 U10 . . . JA 13 152.079 161.389 187.501 1 20 0 C20 U10 405 Ac 1 HETATM 24 C C21 U10 . . . JA 13 151.264 163.075 189.315 1 20 0 C21 U10 405 Ac 1 HETATM 25 C C22 U10 . . . JA 13 151.594 164.531 189.616 1 20 0 C22 U10 405 Ac 1 HETATM 26 C C23 U10 . . . JA 13 153.084 164.699 189.793 1 20 0 C23 U10 405 Ac 1 HETATM 27 C C24 U10 . . . JA 13 153.587 164.697 191.033 1 20 0 C24 U10 405 Ac 1 HETATM 28 C C25 U10 . . . JA 13 152.665 164.523 192.2 1 20 0 C25 U10 405 Ac 1 HETATM 29 C C26 U10 . . . JA 13 155.062 164.86 191.292 1 20 0 C26 U10 405 Ac 1 HETATM 30 C C27 U10 . . . JA 13 155.373 164.042 192.538 1 20 0 C27 U10 405 Ac 1 HETATM 31 C C28 U10 . . . JA 13 156.722 164.407 193.101 1 20 0 C28 U10 405 Ac 1 HETATM 32 C C29 U10 . . . JA 13 156.813 164.807 194.375 1 20 0 C29 U10 405 Ac 1 HETATM 33 C C30 U10 . . . JA 13 155.578 164.886 195.221 1 20 0 C30 U10 405 Ac 1 HETATM 34 C C31 U10 . . . JA 13 158.15 165.179 194.968 1 20 0 C31 U10 405 Ac 1 HETATM 35 O O2 U10 . . . JA 13 161.04 172.285 183.452 1 20 0 O2 U10 405 Ac 1 HETATM 36 O O3 U10 . . . JA 13 159.188 172.839 181.394 1 20 0 O3 U10 405 Ac 1 HETATM 37 O O4 U10 . . . JA 13 156.57 171.745 181.669 1 20 0 O4 U10 405 Ac 1 HETATM 38 O O5 U10 . . . JA 13 156.004 170.227 183.901 1 20 0 O5 U10 405 Ac 1 # _model_server_stats.io_time_ms 118 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 51 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 38 #