data_8IBB
#
_model_server_result.job_id            kqXKJJcXEJ2V29UtxFIKaw 
_model_server_result.datetime_utc      '2024-12-22 09:14:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ibb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"FA","auth_seq_id":706}' 
#
_entry.id    8IBB 
#
_exptl.entry_id    8IBB 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              790.145 
_entity.id                          27 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    24-meric 
_pdbx_struct_assembly.oligomeric_count      24 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      27 
_struct_asym.id                             FA 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 J SG CYS 20 Y CYS 20 1_555 J SG CYS 77 Y CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
disulf ? disulf2 J SG CYS 97 Y CYS 97 1_555 J SG CYS 117 Y CYS 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? 
disulf ? disulf3 M SG CYS 33 e CYS 33 1_555 M SG CYS 66 e CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf4 M SG CYS 43 e CYS 43 1_555 M SG CYS 56 e CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf5 W SG CYS 59 o CYS 59 1_555 W SG CYS 90 o CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf6 W SG CYS 69 o CYS 69 1_555 W SG CYS 80 o CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? 
disulf ? disulf7 X SG CYS 77 p CYS 77 1_555 X SG CYS 84 p CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf8 X SG CYS 113 p CYS 113 1_555 X SG CYS 125 p CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
#
_chem_comp.formula           'C44 H88 N O8 P' 
_chem_comp.formula_weight    790.145 
_chem_comp.id                PC1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     3-SN-PHOSPHATIDYLCHOLINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O12 P PC1 sing 752 n n 
P O14 PC1 doub 753 n n 
P O13 PC1 sing 754 n n 
P O11 PC1 sing 755 n n 
O13 C11 PC1 sing 756 n n 
C11 C12 PC1 sing 757 n n 
C11 H111 PC1 sing 758 n n 
C11 H112 PC1 sing 759 n n 
C12 N PC1 sing 760 n n 
C12 H121 PC1 sing 761 n n 
C12 H122 PC1 sing 762 n n 
N C13 PC1 sing 763 n n 
N C14 PC1 sing 764 n n 
N C15 PC1 sing 765 n n 
C13 H131 PC1 sing 766 n n 
C13 H132 PC1 sing 767 n n 
C13 H133 PC1 sing 768 n n 
C14 H141 PC1 sing 769 n n 
C14 H142 PC1 sing 770 n n 
C14 H143 PC1 sing 771 n n 
C15 H151 PC1 sing 772 n n 
C15 H152 PC1 sing 773 n n 
C15 H153 PC1 sing 774 n n 
O11 C1 PC1 sing 775 n n 
C1 C2 PC1 sing 776 n n 
C1 H11 PC1 sing 777 n n 
C1 H12 PC1 sing 778 n n 
C2 O21 PC1 sing 779 n n 
C2 C3 PC1 sing 780 n n 
C2 H2 PC1 sing 781 n n 
O21 C21 PC1 sing 782 n n 
C21 O22 PC1 doub 783 n n 
C21 C22 PC1 sing 784 n n 
C22 C23 PC1 sing 785 n n 
C22 H221 PC1 sing 786 n n 
C22 H222 PC1 sing 787 n n 
C23 C24 PC1 sing 788 n n 
C23 H231 PC1 sing 789 n n 
C23 H232 PC1 sing 790 n n 
C24 C25 PC1 sing 791 n n 
C24 H241 PC1 sing 792 n n 
C24 H242 PC1 sing 793 n n 
C25 C26 PC1 sing 794 n n 
C25 H251 PC1 sing 795 n n 
C25 H252 PC1 sing 796 n n 
C26 C27 PC1 sing 797 n n 
C26 H261 PC1 sing 798 n n 
C26 H262 PC1 sing 799 n n 
C27 C28 PC1 sing 800 n n 
C27 H271 PC1 sing 801 n n 
C27 H272 PC1 sing 802 n n 
C28 C29 PC1 sing 803 n n 
C28 H281 PC1 sing 804 n n 
C28 H282 PC1 sing 805 n n 
C29 C2A PC1 sing 806 n n 
C29 H291 PC1 sing 807 n n 
C29 H292 PC1 sing 808 n n 
C2A C2B PC1 sing 809 n n 
C2A H2A1 PC1 sing 810 n n 
C2A H2A2 PC1 sing 811 n n 
C2B C2C PC1 sing 812 n n 
C2B H2B1 PC1 sing 813 n n 
C2B H2B2 PC1 sing 814 n n 
C2C C2D PC1 sing 815 n n 
C2C H2C1 PC1 sing 816 n n 
C2C H2C2 PC1 sing 817 n n 
C2D C2E PC1 sing 818 n n 
C2D H2D1 PC1 sing 819 n n 
C2D H2D2 PC1 sing 820 n n 
C2E C2F PC1 sing 821 n n 
C2E H2E1 PC1 sing 822 n n 
C2E H2E2 PC1 sing 823 n n 
C2F C2G PC1 sing 824 n n 
C2F H2F1 PC1 sing 825 n n 
C2F H2F2 PC1 sing 826 n n 
C2G C2H PC1 sing 827 n n 
C2G H2G1 PC1 sing 828 n n 
C2G H2G2 PC1 sing 829 n n 
C2H C2I PC1 sing 830 n n 
C2H H2H1 PC1 sing 831 n n 
C2H H2H2 PC1 sing 832 n n 
C2I H2I1 PC1 sing 833 n n 
C2I H2I2 PC1 sing 834 n n 
C2I H2I3 PC1 sing 835 n n 
C3 O31 PC1 sing 836 n n 
C3 H31 PC1 sing 837 n n 
C3 H32 PC1 sing 838 n n 
O31 C31 PC1 sing 839 n n 
C31 O32 PC1 doub 840 n n 
C31 C32 PC1 sing 841 n n 
C32 C33 PC1 sing 842 n n 
C32 H321 PC1 sing 843 n n 
C32 H322 PC1 sing 844 n n 
C33 C34 PC1 sing 845 n n 
C33 H331 PC1 sing 846 n n 
C33 H332 PC1 sing 847 n n 
C34 C35 PC1 sing 848 n n 
C34 H341 PC1 sing 849 n n 
C34 H342 PC1 sing 850 n n 
C35 C36 PC1 sing 851 n n 
C35 H351 PC1 sing 852 n n 
C35 H352 PC1 sing 853 n n 
C36 C37 PC1 sing 854 n n 
C36 H361 PC1 sing 855 n n 
C36 H362 PC1 sing 856 n n 
C37 C38 PC1 sing 857 n n 
C37 H371 PC1 sing 858 n n 
C37 H372 PC1 sing 859 n n 
C38 C39 PC1 sing 860 n n 
C38 H381 PC1 sing 861 n n 
C38 H382 PC1 sing 862 n n 
C39 C3A PC1 sing 863 n n 
C39 H391 PC1 sing 864 n n 
C39 H392 PC1 sing 865 n n 
C3A C3B PC1 sing 866 n n 
C3A H3A1 PC1 sing 867 n n 
C3A H3A2 PC1 sing 868 n n 
C3B C3C PC1 sing 869 n n 
C3B H3B1 PC1 sing 870 n n 
C3B H3B2 PC1 sing 871 n n 
C3C C3D PC1 sing 872 n n 
C3C H3C1 PC1 sing 873 n n 
C3C H3C2 PC1 sing 874 n n 
C3D C3E PC1 sing 875 n n 
C3D H3D1 PC1 sing 876 n n 
C3D H3D2 PC1 sing 877 n n 
C3E C3F PC1 sing 878 n n 
C3E H3E1 PC1 sing 879 n n 
C3E H3E2 PC1 sing 880 n n 
C3F C3G PC1 sing 881 n n 
C3F H3F1 PC1 sing 882 n n 
C3F H3F2 PC1 sing 883 n n 
C3G C3H PC1 sing 884 n n 
C3G H3G1 PC1 sing 885 n n 
C3G H3G2 PC1 sing 886 n n 
C3H C3I PC1 sing 887 n n 
C3H H3H1 PC1 sing 888 n n 
C3H H3H2 PC1 sing 889 n n 
C3I H3I1 PC1 sing 890 n n 
C3I H3I2 PC1 sing 891 n n 
C3I H3I3 PC1 sing 892 n n 
#
_atom_sites.entry_id                     8IBB 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
Y 25 3PE D 1 501 501 3PE 3PE . 
Z 25 3PE K 1 101 202 3PE 3PE . 
AA 25 3PE L 1 701 701 3PE 3PE . 
BA 25 3PE L 1 702 702 3PE 3PE . 
CA 25 3PE L 1 703 703 3PE 3PE . 
DA 26 CDL L 1 704 704 CDL CDL . 
EA 26 CDL L 1 705 706 CDL CDL . 
FA 27 PC1 L 1 706 709 PC1 PC1 . 
GA 25 3PE M 1 501 502 3PE 3PE . 
HA 25 3PE M 1 502 503 3PE 3PE . 
IA 25 3PE M 1 503 504 3PE 3PE . 
JA 25 3PE O 1 401 505 3PE 3PE . 
KA 28 ADP O 1 402 401 ADP ADP . 
LA 26 CDL d 1 201 507 CDL CDL . 
MA 26 CDL h 1 201 705 CDL CDL . 
NA 25 3PE i 1 201 699 3PE 3PE . 
OA 25 3PE j 1 700 700 3PE 3PE . 
PA 25 3PE m 1 201 506 3PE 3PE . 
QA 25 3PE m 1 202 201 3PE 3PE . 
RA 29 EHZ n 1 201 201 EHZ EHZ . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O12 PC1 . . . FA 27 118.431 222.288 190.698 1 20 -1 O12 PC1 706 L 1 
HETATM 2 P P PC1 . . . FA 27 118.66 223.78 190.709 1 20 0 P PC1 706 L 1 
HETATM 3 O O14 PC1 . . . FA 27 118.153 224.626 189.568 1 20 0 O14 PC1 706 L 1 
HETATM 4 O O13 PC1 . . . FA 27 118.06 224.372 192.08 1 20 0 O13 PC1 706 L 1 
HETATM 5 C C11 PC1 . . . FA 27 117.95 223.541 193.233 1 20 0 C11 PC1 706 L 1 
HETATM 6 C C12 PC1 . . . FA 27 116.777 224.007 194.085 1 20 0 C12 PC1 706 L 1 
HETATM 7 N N PC1 . . . FA 27 116.643 223.119 195.245 1 20 0 N PC1 706 L 1 
HETATM 8 C C13 PC1 . . . FA 27 117.885 223.157 196.027 1 20 0 C13 PC1 706 L 1 
HETATM 9 C C14 PC1 . . . FA 27 115.522 223.563 196.083 1 20 0 C14 PC1 706 L 1 
HETATM 10 C C15 PC1 . . . FA 27 116.395 221.749 194.782 1 20 0 C15 PC1 706 L 1 
HETATM 11 O O11 PC1 . . . FA 27 120.237 224.048 190.87 1 20 0 O11 PC1 706 L 1 
HETATM 12 C C1 PC1 . . . FA 27 120.688 225.273 191.435 1 20 0 C1 PC1 706 L 1 
HETATM 13 C C2 PC1 . . . FA 27 121.557 226.008 190.423 1 20 0 C2 PC1 706 L 1 
HETATM 14 O O21 PC1 . . . FA 27 120.823 226.241 189.223 1 20 0 O21 PC1 706 L 1 
HETATM 15 C C21 PC1 . . . FA 27 119.979 227.419 189.332 1 20 0 C21 PC1 706 L 1 
HETATM 16 O O22 PC1 . . . FA 27 118.875 227.312 189.837 1 20 0 O22 PC1 706 L 1 
HETATM 17 C C22 PC1 . . . FA 27 120.456 228.765 188.835 1 20 0 C22 PC1 706 L 1 
HETATM 18 C C23 PC1 . . . FA 27 121.612 229.225 189.712 1 20 0 C23 PC1 706 L 1 
HETATM 19 C C24 PC1 . . . FA 27 121.824 230.733 189.662 1 20 0 C24 PC1 706 L 1 
HETATM 20 C C25 PC1 . . . FA 27 122.46 231.203 188.361 1 20 0 C25 PC1 706 L 1 
HETATM 21 C C26 PC1 . . . FA 27 122.908 232.649 188.529 1 20 0 C26 PC1 706 L 1 
HETATM 22 C C27 PC1 . . . FA 27 123.859 233.082 187.423 1 20 0 C27 PC1 706 L 1 
HETATM 23 C C28 PC1 . . . FA 27 124.488 234.427 187.765 1 20 0 C28 PC1 706 L 1 
HETATM 24 C C29 PC1 . . . FA 27 125.54 234.819 186.736 1 20 0 C29 PC1 706 L 1 
HETATM 25 C C2A PC1 . . . FA 27 126.576 233.717 186.567 1 20 0 C2A PC1 706 L 1 
HETATM 26 C C2B PC1 . . . FA 27 127.357 233.484 187.854 1 20 0 C2B PC1 706 L 1 
HETATM 27 C C2C PC1 . . . FA 27 128.098 234.745 188.277 1 20 0 C2C PC1 706 L 1 
HETATM 28 C C2D PC1 . . . FA 27 128.957 234.483 189.506 1 20 0 C2D PC1 706 L 1 
HETATM 29 C C2E PC1 . . . FA 27 129.678 235.752 189.937 1 20 0 C2E PC1 706 L 1 
HETATM 30 C C2F PC1 . . . FA 27 130.607 235.489 191.114 1 20 0 C2F PC1 706 L 1 
HETATM 31 C C3 PC1 . . . FA 27 122.783 225.164 190.106 1 20 0 C3 PC1 706 L 1 
HETATM 32 O O31 PC1 . . . FA 27 123.695 225.269 191.195 1 20 0 O31 PC1 706 L 1 
HETATM 33 C C31 PC1 . . . FA 27 124.397 226.526 191.404 1 20 0 C31 PC1 706 L 1 
HETATM 34 O O32 PC1 . . . FA 27 124.851 226.783 192.507 1 20 0 O32 PC1 706 L 1 
HETATM 35 C C32 PC1 . . . FA 27 124.549 227.503 190.264 1 20 0 C32 PC1 706 L 1 
HETATM 36 C C33 PC1 . . . FA 27 125.269 228.748 190.763 1 20 0 C33 PC1 706 L 1 
HETATM 37 C C34 PC1 . . . FA 27 125.292 229.826 189.69 1 20 0 C34 PC1 706 L 1 
HETATM 38 C C35 PC1 . . . FA 27 126.237 230.941 190.106 1 20 0 C35 PC1 706 L 1 
HETATM 39 C C36 PC1 . . . FA 27 127.643 230.378 190.251 1 20 0 C36 PC1 706 L 1 
HETATM 40 C C37 PC1 . . . FA 27 128.556 231.39 190.924 1 20 0 C37 PC1 706 L 1 
HETATM 41 C C38 PC1 . . . FA 27 128.066 231.677 192.335 1 20 0 C38 PC1 706 L 1 
HETATM 42 C C39 PC1 . . . FA 27 128.932 232.743 192.984 1 20 0 C39 PC1 706 L 1 
HETATM 43 C C3A PC1 . . . FA 27 128.509 232.987 194.424 1 20 0 C3A PC1 706 L 1 
HETATM 44 C C3B PC1 . . . FA 27 129.156 234.261 194.945 1 20 0 C3B PC1 706 L 1 
HETATM 45 C C3C PC1 . . . FA 27 128.79 235.44 194.053 1 20 0 C3C PC1 706 L 1 
HETATM 46 C C3D PC1 . . . FA 27 129.342 236.727 194.644 1 20 0 C3D PC1 706 L 1 
HETATM 47 C C3E PC1 . . . FA 27 130.812 236.555 195.003 1 20 0 C3E PC1 706 L 1 
HETATM 48 C C3F PC1 . . . FA 27 131.275 237.683 195.915 1 20 0 C3F PC1 706 L 1 
HETATM 49 C C3G PC1 . . . FA 27 132.745 237.527 196.278 1 20 0 C3G PC1 706 L 1 
HETATM 50 C C3H PC1 . . . FA 27 133.177 238.605 197.262 1 20 0 C3H PC1 706 L 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    211 
_model_server_stats.query_time_ms           405 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           50 
#