data_8IBC # _model_server_result.job_id IgX0Y1rn2oCGAgIzj1SSrA _model_server_result.datetime_utc '2024-10-19 20:03:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ibc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"CA","auth_seq_id":401}' # _entry.id 8IBC # _exptl.entry_id 8IBC _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 616.487 _entity.id 11 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 21-meric _pdbx_struct_assembly.oligomeric_count 21 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 11 V N N ? 11 W N N ? 11 CA N N ? 11 DA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 338 AA CYS 338 1_555 A SG CYS 360 AA CYS 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? disulf ? disulf2 E SG CYS 217 AE CYS 217 1_555 E SG CYS 236 AE CYS 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf3 E SG CYS 222 AE CYS 222 1_555 E SG CYS 238 AE CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? disulf ? disulf4 H SG CYS 51 AH CYS 51 1_555 H SG CYS 65 AH CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf5 L SG CYS 338 Aa CYS 338 1_555 L SG CYS 360 Aa CYS 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf6 P SG CYS 222 Ae CYS 222 1_555 P SG CYS 238 Ae CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? disulf ? disulf7 S SG CYS 35 Ah CYS 35 1_555 S SG CYS 79 Ah CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf8 S SG CYS 51 Ah CYS 51 1_555 S SG CYS 65 Ah CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 HA C33 CDL . Ac CDL 406 1_555 JA OB7 CDL . Ag CDL 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.408 ? metalc ? metalc1 C NE2 HIS 83 AC HIS 83 1_555 V FE HEM . AC HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc2 C NE2 HIS 97 AC HIS 97 1_555 W FE HEM . AC HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc3 C NE2 HIS 182 AC HIS 182 1_555 V FE HEM . AC HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc4 C NE2 HIS 196 AC HIS 196 1_555 W FE HEM . AC HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc5 D NE2 HIS 125 AD HIS 125 1_555 AA FE HEC . AD HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.927 ? metalc ? metalc6 D SD MET 244 AD MET 244 1_555 AA FE HEC . AD HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc7 N NE2 HIS 83 Ac HIS 83 1_555 CA FE HEM . Ac HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc8 N NE2 HIS 97 Ac HIS 97 1_555 DA FE HEM . Ac HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc9 N NE2 HIS 182 Ac HIS 182 1_555 CA FE HEM . Ac HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc10 N NE2 HIS 196 Ac HIS 196 1_555 DA FE HEM . Ac HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc11 O NE2 HIS 125 Ad HIS 125 1_555 IA FE HEC . Ad HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc12 O SD MET 244 Ad MET 244 1_555 IA FE HEC . Ad HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 600 n n CHA C4D HEM doub 601 n n CHA HHA HEM sing 602 n n CHB C4A HEM sing 603 n n CHB C1B HEM doub 604 n n CHB HHB HEM sing 605 n n CHC C4B HEM sing 606 n n CHC C1C HEM doub 607 n n CHC HHC HEM sing 608 n n CHD C4C HEM doub 609 n n CHD C1D HEM sing 610 n n CHD HHD HEM sing 611 n n C1A C2A HEM doub 612 n y C1A NA HEM sing 613 n y C2A C3A HEM sing 614 n y C2A CAA HEM sing 615 n n C3A C4A HEM doub 616 n y C3A CMA HEM sing 617 n n C4A NA HEM sing 618 n y CMA HMA HEM sing 619 n n CMA HMAA HEM sing 620 n n CMA HMAB HEM sing 621 n n CAA CBA HEM sing 622 n n CAA HAA HEM sing 623 n n CAA HAAA HEM sing 624 n n CBA CGA HEM sing 625 n n CBA HBA HEM sing 626 n n CBA HBAA HEM sing 627 n n CGA O1A HEM doub 628 n n CGA O2A HEM sing 629 n n C1B C2B HEM sing 630 n n C1B NB HEM sing 631 n n C2B C3B HEM doub 632 n n C2B CMB HEM sing 633 n n C3B C4B HEM sing 634 n n C3B CAB HEM sing 635 n n C4B NB HEM doub 636 n n CMB HMB HEM sing 637 n n CMB HMBA HEM sing 638 n n CMB HMBB HEM sing 639 n n CAB CBB HEM doub 640 n n CAB HAB HEM sing 641 n n CBB HBB HEM sing 642 n n CBB HBBA HEM sing 643 n n C1C C2C HEM sing 644 n y C1C NC HEM sing 645 n y C2C C3C HEM doub 646 n y C2C CMC HEM sing 647 n n C3C C4C HEM sing 648 n y C3C CAC HEM sing 649 n n C4C NC HEM sing 650 n y CMC HMC HEM sing 651 n n CMC HMCA HEM sing 652 n n CMC HMCB HEM sing 653 n n CAC CBC HEM doub 654 n n CAC HAC HEM sing 655 n n CBC HBC HEM sing 656 n n CBC HBCA HEM sing 657 n n C1D C2D HEM sing 658 n n C1D ND HEM doub 659 n n C2D C3D HEM doub 660 n n C2D CMD HEM sing 661 n n C3D C4D HEM sing 662 n n C3D CAD HEM sing 663 n n C4D ND HEM sing 664 n n CMD HMD HEM sing 665 n n CMD HMDA HEM sing 666 n n CMD HMDB HEM sing 667 n n CAD CBD HEM sing 668 n n CAD HAD HEM sing 669 n n CAD HADA HEM sing 670 n n CBD CGD HEM sing 671 n n CBD HBD HEM sing 672 n n CBD HBDA HEM sing 673 n n CGD O1D HEM doub 674 n n CGD O2D HEM sing 675 n n O2A H2A HEM sing 676 n n O2D H2D HEM sing 677 n n FE NA HEM sing 678 n n FE NB HEM sing 679 n n FE NC HEM sing 680 n n FE ND HEM sing 681 n n # _atom_sites.entry_id 8IBC _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code V 11 HEM AC 1 401 401 HEM HEM . W 11 HEM AC 1 402 402 HEM HEM . X 12 3PE AC 1 403 403 3PE 3PE . Y 13 U10 AC 1 404 505 U10 U10 . Z 14 UQ6 AC 1 405 506 UQ6 UQ6 . AA 15 HEC AD 1 401 395 HEC HEC . BA 16 CDL Aa 1 501 536 CDL CDL . CA 11 HEM Ac 1 401 401 HEM HEM . DA 11 HEM Ac 1 402 402 HEM HEM . EA 12 3PE Ac 1 403 403 3PE 3PE . FA 13 U10 Ac 1 404 505 U10 U10 . GA 14 UQ6 Ac 1 405 506 UQ6 UQ6 . HA 16 CDL Ac 1 406 102 CDL CDL . IA 15 HEC Ad 1 401 395 HEC HEC . JA 16 CDL Ag 1 101 103 CDL CDL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . CA 11 142.783 176.369 185.324 1 36.62 0 CHA HEM 401 Ac 1 HETATM 2 C CHB HEM . . . CA 11 140.254 174.525 189.009 1 29.58 0 CHB HEM 401 Ac 1 HETATM 3 C CHC HEM . . . CA 11 144.019 175.373 191.982 1 32.52 0 CHC HEM 401 Ac 1 HETATM 4 C CHD HEM . . . CA 11 146.575 177.059 188.24 1 24.05 0 CHD HEM 401 Ac 1 HETATM 5 C C1A HEM . . . CA 11 141.81 175.786 186.088 1 49.3 0 C1A HEM 401 Ac 1 HETATM 6 C C2A HEM . . . CA 11 140.585 175.35 185.574 1 35.8 0 C2A HEM 401 Ac 1 HETATM 7 C C3A HEM . . . CA 11 139.859 174.836 186.594 1 35.96 0 C3A HEM 401 Ac 1 HETATM 8 C C4A HEM . . . CA 11 140.643 174.943 187.758 1 36.75 0 C4A HEM 401 Ac 1 HETATM 9 C CMA HEM . . . CA 11 138.479 174.243 186.506 1 36.63 0 CMA HEM 401 Ac 1 HETATM 10 C CAA HEM . . . CA 11 140.172 175.461 184.14 1 44.31 0 CAA HEM 401 Ac 1 HETATM 11 C CBA HEM . . . CA 11 139.818 176.926 183.885 1 44.71 0 CBA HEM 401 Ac 1 HETATM 12 C CGA HEM . . . CA 11 140.575 177.396 182.675 1 48.38 0 CGA HEM 401 Ac 1 HETATM 13 O O1A HEM . . . CA 11 139.98 177.958 181.732 1 53.33 0 O1A HEM 401 Ac 1 HETATM 14 O O2A HEM . . . CA 11 141.809 177.222 182.622 1 53.28 0 O2A HEM 401 Ac 1 HETATM 15 C C1B HEM . . . CA 11 141.099 174.635 190.112 1 32.48 0 C1B HEM 401 Ac 1 HETATM 16 C C2B HEM . . . CA 11 140.67 174.225 191.4 1 24.66 0 C2B HEM 401 Ac 1 HETATM 17 C C3B HEM . . . CA 11 141.701 174.451 192.251 1 33.73 0 C3B HEM 401 Ac 1 HETATM 18 C C4B HEM . . . CA 11 142.791 175.021 191.434 1 32.62 0 C4B HEM 401 Ac 1 HETATM 19 C CMB HEM . . . CA 11 139.323 173.651 191.747 1 11.9 0 CMB HEM 401 Ac 1 HETATM 20 C CAB HEM . . . CA 11 141.735 174.186 193.695 1 43.91 0 CAB HEM 401 Ac 1 HETATM 21 C CBB HEM . . . CA 11 141.588 172.932 194.114 1 50.9 0 CBB HEM 401 Ac 1 HETATM 22 C C1C HEM . . . CA 11 145.052 175.878 191.211 1 29.36 0 C1C HEM 401 Ac 1 HETATM 23 C C2C HEM . . . CA 11 146.327 176.198 191.689 1 31.24 0 C2C HEM 401 Ac 1 HETATM 24 C C3C HEM . . . CA 11 147.053 176.678 190.619 1 27.8 0 C3C HEM 401 Ac 1 HETATM 25 C C4C HEM . . . CA 11 146.202 176.65 189.488 1 33.04 0 C4C HEM 401 Ac 1 HETATM 26 C CMC HEM . . . CA 11 146.809 176.03 193.103 1 26.35 0 CMC HEM 401 Ac 1 HETATM 27 C CAC HEM . . . CA 11 148.45 177.134 190.628 1 33.29 0 CAC HEM 401 Ac 1 HETATM 28 C CBC HEM . . . CA 11 149.432 176.279 190.883 1 33.63 0 CBC HEM 401 Ac 1 HETATM 29 C C1D HEM . . . CA 11 145.702 177.003 187.162 1 31.51 0 C1D HEM 401 Ac 1 HETATM 30 C C2D HEM . . . CA 11 146.105 177.481 185.843 1 32.6 0 C2D HEM 401 Ac 1 HETATM 31 C C3D HEM . . . CA 11 145.056 177.295 185.037 1 29.78 0 C3D HEM 401 Ac 1 HETATM 32 C C4D HEM . . . CA 11 144.014 176.692 185.861 1 34.15 0 C4D HEM 401 Ac 1 HETATM 33 C CMD HEM . . . CA 11 147.432 178.075 185.454 1 24.17 0 CMD HEM 401 Ac 1 HETATM 34 C CAD HEM . . . CA 11 144.975 177.631 183.575 1 32.52 0 CAD HEM 401 Ac 1 HETATM 35 C CBD HEM . . . CA 11 144.677 179.12 183.398 1 45.02 0 CBD HEM 401 Ac 1 HETATM 36 C CGD HEM . . . CA 11 144.487 179.374 181.924 1 47.94 0 CGD HEM 401 Ac 1 HETATM 37 O O1D HEM . . . CA 11 145.422 179.865 181.256 1 53.35 0 O1D HEM 401 Ac 1 HETATM 38 O O2D HEM . . . CA 11 143.408 179.073 181.366 1 51.57 0 O2D HEM 401 Ac 1 HETATM 39 N NA HEM . . . CA 11 141.826 175.557 187.438 1 44.42 0 NA HEM 401 Ac 1 HETATM 40 N NB HEM . . . CA 11 142.36 175.091 190.168 1 32.01 0 NB HEM 401 Ac 1 HETATM 41 N NC HEM . . . CA 11 144.981 176.2 189.887 1 47.54 0 NC HEM 401 Ac 1 HETATM 42 N ND HEM . . . CA 11 144.452 176.536 187.115 1 30.58 0 ND HEM 401 Ac 1 HETATM 43 FE FE HEM . . . CA 11 143.46 175.818 188.526 1 13.23 0 FE HEM 401 Ac 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 214 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 43 #