data_8IBG # _model_server_result.job_id FJGBnAeeC0DPFZSINnt8Pw _model_server_result.datetime_utc '2024-11-30 19:13:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ibg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"BA","auth_seq_id":401}' # _entry.id 8IBG # _exptl.entry_id 8IBG _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 616.487 _entity.id 11 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 22-meric _pdbx_struct_assembly.oligomeric_count 22 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 11 W N N ? 11 X N N ? 11 BA N N ? 11 CA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 338 AA CYS 338 1_555 A SG CYS 360 AA CYS 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? disulf ? disulf2 E SG CYS 222 AE CYS 222 1_555 E SG CYS 238 AE CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf3 H SG CYS 51 AH CYS 51 1_555 H SG CYS 65 AH CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf4 L SG CYS 338 Aa CYS 338 1_555 L SG CYS 360 Aa CYS 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? disulf ? disulf5 P SG CYS 222 Ae CYS 222 1_555 P SG CYS 238 Ae CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf6 S SG CYS 35 Ah CYS 35 1_555 S SG CYS 79 Ah CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.849 ? disulf ? disulf7 S SG CYS 51 Ah CYS 51 1_555 S SG CYS 65 Ah CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 C NE2 HIS 83 AC HIS 83 1_555 W FE HEM . AC HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc2 C NE2 HIS 97 AC HIS 97 1_555 X FE HEM . AC HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc3 C NE2 HIS 182 AC HIS 182 1_555 W FE HEM . AC HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.872 ? metalc ? metalc4 C NE2 HIS 196 AC HIS 196 1_555 X FE HEM . AC HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? metalc ? metalc5 D NE2 HIS 125 AD HIS 125 1_555 Z FE HEC . AD HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc6 N NE2 HIS 83 Ac HIS 83 1_555 BA FE HEM . Ac HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc7 N NE2 HIS 97 Ac HIS 97 1_555 CA FE HEM . Ac HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc8 N NE2 HIS 182 Ac HIS 182 1_555 BA FE HEM . Ac HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc9 N NE2 HIS 196 Ac HIS 196 1_555 CA FE HEM . Ac HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc10 O NE2 HIS 125 Ad HIS 125 1_555 GA FE HEC . Ad HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc11 O SD MET 244 Ad MET 244 1_555 GA FE HEC . Ad HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 724 n n CHA C4D HEM doub 725 n n CHA HHA HEM sing 726 n n CHB C4A HEM sing 727 n n CHB C1B HEM doub 728 n n CHB HHB HEM sing 729 n n CHC C4B HEM sing 730 n n CHC C1C HEM doub 731 n n CHC HHC HEM sing 732 n n CHD C4C HEM doub 733 n n CHD C1D HEM sing 734 n n CHD HHD HEM sing 735 n n C1A C2A HEM doub 736 n y C1A NA HEM sing 737 n y C2A C3A HEM sing 738 n y C2A CAA HEM sing 739 n n C3A C4A HEM doub 740 n y C3A CMA HEM sing 741 n n C4A NA HEM sing 742 n y CMA HMA HEM sing 743 n n CMA HMAA HEM sing 744 n n CMA HMAB HEM sing 745 n n CAA CBA HEM sing 746 n n CAA HAA HEM sing 747 n n CAA HAAA HEM sing 748 n n CBA CGA HEM sing 749 n n CBA HBA HEM sing 750 n n CBA HBAA HEM sing 751 n n CGA O1A HEM doub 752 n n CGA O2A HEM sing 753 n n C1B C2B HEM sing 754 n n C1B NB HEM sing 755 n n C2B C3B HEM doub 756 n n C2B CMB HEM sing 757 n n C3B C4B HEM sing 758 n n C3B CAB HEM sing 759 n n C4B NB HEM doub 760 n n CMB HMB HEM sing 761 n n CMB HMBA HEM sing 762 n n CMB HMBB HEM sing 763 n n CAB CBB HEM doub 764 n n CAB HAB HEM sing 765 n n CBB HBB HEM sing 766 n n CBB HBBA HEM sing 767 n n C1C C2C HEM sing 768 n y C1C NC HEM sing 769 n y C2C C3C HEM doub 770 n y C2C CMC HEM sing 771 n n C3C C4C HEM sing 772 n y C3C CAC HEM sing 773 n n C4C NC HEM sing 774 n y CMC HMC HEM sing 775 n n CMC HMCA HEM sing 776 n n CMC HMCB HEM sing 777 n n CAC CBC HEM doub 778 n n CAC HAC HEM sing 779 n n CBC HBC HEM sing 780 n n CBC HBCA HEM sing 781 n n C1D C2D HEM sing 782 n n C1D ND HEM doub 783 n n C2D C3D HEM doub 784 n n C2D CMD HEM sing 785 n n C3D C4D HEM sing 786 n n C3D CAD HEM sing 787 n n C4D ND HEM sing 788 n n CMD HMD HEM sing 789 n n CMD HMDA HEM sing 790 n n CMD HMDB HEM sing 791 n n CAD CBD HEM sing 792 n n CAD HAD HEM sing 793 n n CAD HADA HEM sing 794 n n CBD CGD HEM sing 795 n n CBD HBD HEM sing 796 n n CBD HBDA HEM sing 797 n n CGD O1D HEM doub 798 n n CGD O2D HEM sing 799 n n O2A H2A HEM sing 800 n n O2D H2D HEM sing 801 n n FE NA HEM sing 802 n n FE NB HEM sing 803 n n FE NC HEM sing 804 n n FE ND HEM sing 805 n n # _atom_sites.entry_id 8IBG _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code W 11 HEM AC 1 401 401 HEM HEM . X 11 HEM AC 1 402 402 HEM HEM . Y 12 UQ6 AC 1 403 506 UQ6 UQ6 . Z 13 HEC AD 1 401 395 HEC HEC . AA 14 3PE Aa 1 501 535 3PE 3PE . BA 11 HEM Ac 1 401 401 HEM HEM . CA 11 HEM Ac 1 402 402 HEM HEM . DA 14 3PE Ac 1 403 403 3PE 3PE . EA 15 U10 Ac 1 404 505 U10 U10 . FA 12 UQ6 Ac 1 405 506 UQ6 UQ6 . GA 13 HEC Ad 1 401 395 HEC HEC . HA 16 3PH Ad 1 402 400 3PH 3PH . IA 17 CDL Ag 1 101 102 CDL CDL . JA 17 CDL Ag 1 102 103 CDL CDL . KA 14 3PE Ag 1 103 104 3PE 3PE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . BA 11 150.037 175.574 179.853 1 36.62 0 CHA HEM 401 Ac 1 HETATM 2 C CHB HEM . . . BA 11 146.556 175.023 183.185 1 29.58 0 CHB HEM 401 Ac 1 HETATM 3 C CHC HEM . . . BA 11 149.974 174.87 186.656 1 32.52 0 CHC HEM 401 Ac 1 HETATM 4 C CHD HEM . . . BA 11 153.407 174.85 183.224 1 24.05 0 CHD HEM 401 Ac 1 HETATM 5 C C1A HEM . . . BA 11 148.817 175.459 180.492 1 49.3 0 C1A HEM 401 Ac 1 HETATM 6 C C2A HEM . . . BA 11 147.582 175.543 179.823 1 35.8 0 C2A HEM 401 Ac 1 HETATM 7 C C3A HEM . . . BA 11 146.598 175.389 180.739 1 35.96 0 C3A HEM 401 Ac 1 HETATM 8 C C4A HEM . . . BA 11 147.211 175.21 181.993 1 36.75 0 C4A HEM 401 Ac 1 HETATM 9 C CMA HEM . . . BA 11 145.117 175.406 180.467 1 36.63 0 CMA HEM 401 Ac 1 HETATM 10 C CAA HEM . . . BA 11 147.371 175.749 178.344 1 44.31 0 CAA HEM 401 Ac 1 HETATM 11 C CBA HEM . . . BA 11 147.349 177.236 177.994 1 44.71 0 CBA HEM 401 Ac 1 HETATM 12 C CGA HEM . . . BA 11 148.688 177.633 177.429 1 48.38 0 CGA HEM 401 Ac 1 HETATM 13 O O1A HEM . . . BA 11 149.018 177.242 176.339 1 53.33 0 O1A HEM 401 Ac 1 HETATM 14 O O2A HEM . . . BA 11 149.508 178.413 178.137 1 53.28 0 O2A HEM 401 Ac 1 HETATM 15 C C1B HEM . . . BA 11 147.249 174.961 184.397 1 32.48 0 C1B HEM 401 Ac 1 HETATM 16 C C2B HEM . . . BA 11 146.548 174.88 185.623 1 24.66 0 C2B HEM 401 Ac 1 HETATM 17 C C3B HEM . . . BA 11 147.468 174.834 186.623 1 33.73 0 C3B HEM 401 Ac 1 HETATM 18 C C4B HEM . . . BA 11 148.78 174.895 185.945 1 32.62 0 C4B HEM 401 Ac 1 HETATM 19 C CMB HEM . . . BA 11 145.048 174.849 185.762 1 11.9 0 CMB HEM 401 Ac 1 HETATM 20 C CAB HEM . . . BA 11 147.24 174.759 188.079 1 43.91 0 CAB HEM 401 Ac 1 HETATM 21 C CBB HEM . . . BA 11 146.678 173.712 188.674 1 50.9 0 CBB HEM 401 Ac 1 HETATM 22 C C1C HEM . . . BA 11 151.193 174.826 186.016 1 29.36 0 C1C HEM 401 Ac 1 HETATM 23 C C2C HEM . . . BA 11 152.43 174.706 186.657 1 31.24 0 C2C HEM 401 Ac 1 HETATM 24 C C3C HEM . . . BA 11 153.394 174.704 185.669 1 27.8 0 C3C HEM 401 Ac 1 HETATM 25 C C4C HEM . . . BA 11 152.735 174.826 184.422 1 33.04 0 C4C HEM 401 Ac 1 HETATM 26 C CMC HEM . . . BA 11 152.648 174.595 188.145 1 26.35 0 CMC HEM 401 Ac 1 HETATM 27 C CAC HEM . . . BA 11 154.852 174.598 185.868 1 33.29 0 CAC HEM 401 Ac 1 HETATM 28 C CBC HEM . . . BA 11 155.407 173.431 186.169 1 33.63 0 CBC HEM 401 Ac 1 HETATM 29 C C1D HEM . . . BA 11 152.763 175.074 182.017 1 31.51 0 C1D HEM 401 Ac 1 HETATM 30 C C2D HEM . . . BA 11 153.476 175.223 180.75 1 32.6 0 C2D HEM 401 Ac 1 HETATM 31 C C3D HEM . . . BA 11 152.542 175.429 179.809 1 29.78 0 C3D HEM 401 Ac 1 HETATM 32 C C4D HEM . . . BA 11 151.25 175.398 180.502 1 34.15 0 C4D HEM 401 Ac 1 HETATM 33 C CMD HEM . . . BA 11 154.968 175.162 180.538 1 24.17 0 CMD HEM 401 Ac 1 HETATM 34 C CAD HEM . . . BA 11 152.79 175.653 178.342 1 32.52 0 CAD HEM 401 Ac 1 HETATM 35 C CBD HEM . . . BA 11 152.752 177.162 178.085 1 45.02 0 CBD HEM 401 Ac 1 HETATM 36 C CGD HEM . . . BA 11 152.976 177.454 176.63 1 47.94 0 CGD HEM 401 Ac 1 HETATM 37 O O1D HEM . . . BA 11 154.054 177.831 176.247 1 53.35 0 O1D HEM 401 Ac 1 HETATM 38 O O2D HEM . . . BA 11 151.97 177.303 175.753 1 51.57 0 O2D HEM 401 Ac 1 HETATM 39 N NA HEM . . . BA 11 148.565 175.254 181.83 1 44.42 0 NA HEM 401 Ac 1 HETATM 40 N NB HEM . . . BA 11 148.576 174.967 184.622 1 32.01 0 NB HEM 401 Ac 1 HETATM 41 N NC HEM . . . BA 11 151.377 174.896 184.661 1 47.54 0 NC HEM 401 Ac 1 HETATM 42 N ND HEM . . . BA 11 151.452 175.187 181.805 1 30.58 0 ND HEM 401 Ac 1 HETATM 43 FE FE HEM . . . BA 11 150.008 175.07 183.206 1 13.23 0 FE HEM 401 Ac 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 59 _model_server_stats.query_time_ms 396 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #