data_8IBG
#
_model_server_result.job_id            dhdbLAV5okAbXXbIA48ARg 
_model_server_result.datetime_utc      '2024-11-30 19:13:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ibg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Z","auth_seq_id":401}' 
#
_entry.id    8IBG 
#
_exptl.entry_id    8IBG 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              618.503 
_entity.id                          13 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'HEME C' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    22-meric 
_pdbx_struct_assembly.oligomeric_count      22 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 13 Z N N 
? 13 GA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 338 AA CYS 338 1_555 A SG CYS 360 AA CYS 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? 
disulf ? disulf2 E SG CYS 222 AE CYS 222 1_555 E SG CYS 238 AE CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
disulf ? disulf3 H SG CYS 51 AH CYS 51 1_555 H SG CYS 65 AH CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf4 L SG CYS 338 Aa CYS 338 1_555 L SG CYS 360 Aa CYS 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? 
disulf ? disulf5 P SG CYS 222 Ae CYS 222 1_555 P SG CYS 238 Ae CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
disulf ? disulf6 S SG CYS 35 Ah CYS 35 1_555 S SG CYS 79 Ah CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.849 ? 
disulf ? disulf7 S SG CYS 51 Ah CYS 51 1_555 S SG CYS 65 Ah CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
metalc ? metalc1 C NE2 HIS 83 AC HIS 83 1_555 W FE HEM . AC HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
metalc ? metalc2 C NE2 HIS 97 AC HIS 97 1_555 X FE HEM . AC HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
metalc ? metalc3 C NE2 HIS 182 AC HIS 182 1_555 W FE HEM . AC HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.872 ? 
metalc ? metalc4 C NE2 HIS 196 AC HIS 196 1_555 X FE HEM . AC HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? 
metalc ? metalc5 D NE2 HIS 125 AD HIS 125 1_555 Z FE HEC . AD HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? 
metalc ? metalc6 N NE2 HIS 83 Ac HIS 83 1_555 BA FE HEM . Ac HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
metalc ? metalc7 N NE2 HIS 97 Ac HIS 97 1_555 CA FE HEM . Ac HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? 
metalc ? metalc8 N NE2 HIS 182 Ac HIS 182 1_555 BA FE HEM . Ac HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
metalc ? metalc9 N NE2 HIS 196 Ac HIS 196 1_555 CA FE HEM . Ac HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? 
metalc ? metalc10 O NE2 HIS 125 Ad HIS 125 1_555 GA FE HEC . Ad HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? 
metalc ? metalc11 O SD MET 244 Ad MET 244 1_555 GA FE HEC . Ad HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? 
#
_chem_comp.formula           'C34 H34 Fe N4 O4' 
_chem_comp.formula_weight    618.503 
_chem_comp.id                HEC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'HEME C' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
FE NA HEC sing 640 n n 
FE NB HEC sing 641 n n 
FE NC HEC sing 642 n n 
FE ND HEC sing 643 n n 
CHA C1A HEC doub 644 n n 
CHA C4D HEC sing 645 n n 
CHA HHA HEC sing 646 n n 
CHB C4A HEC doub 647 n n 
CHB C1B HEC sing 648 n n 
CHB HHB HEC sing 649 n n 
CHC C4B HEC doub 650 n n 
CHC C1C HEC sing 651 n n 
CHC HHC HEC sing 652 n n 
CHD C4C HEC doub 653 n n 
CHD C1D HEC sing 654 n n 
CHD HHD HEC sing 655 n n 
NA C1A HEC sing 656 n y 
NA C4A HEC sing 657 n y 
C1A C2A HEC sing 658 n y 
C2A C3A HEC doub 659 n y 
C2A CAA HEC sing 660 n n 
C3A C4A HEC sing 661 n y 
C3A CMA HEC sing 662 n n 
CMA HMA1 HEC sing 663 n n 
CMA HMA2 HEC sing 664 n n 
CMA HMA3 HEC sing 665 n n 
CAA CBA HEC sing 666 n n 
CAA HAA1 HEC sing 667 n n 
CAA HAA2 HEC sing 668 n n 
CBA CGA HEC sing 669 n n 
CBA HBA1 HEC sing 670 n n 
CBA HBA2 HEC sing 671 n n 
CGA O1A HEC doub 672 n n 
CGA O2A HEC sing 673 n n 
O2A H2A HEC sing 674 n n 
NB C1B HEC sing 675 n y 
NB C4B HEC sing 676 n y 
C1B C2B HEC doub 677 n y 
C2B C3B HEC sing 678 n y 
C2B CMB HEC sing 679 n n 
C3B C4B HEC sing 680 n y 
C3B CAB HEC doub 681 e n 
CMB HMB1 HEC sing 682 n n 
CMB HMB2 HEC sing 683 n n 
CMB HMB3 HEC sing 684 n n 
CAB CBB HEC sing 685 n n 
CAB HAB HEC sing 686 n n 
CBB HBB1 HEC sing 687 n n 
CBB HBB2 HEC sing 688 n n 
CBB HBB3 HEC sing 689 n n 
NC C1C HEC sing 690 n y 
NC C4C HEC sing 691 n y 
C1C C2C HEC doub 692 n y 
C2C C3C HEC sing 693 n y 
C2C CMC HEC sing 694 n n 
C3C C4C HEC sing 695 n y 
C3C CAC HEC doub 696 e n 
CMC HMC1 HEC sing 697 n n 
CMC HMC2 HEC sing 698 n n 
CMC HMC3 HEC sing 699 n n 
CAC CBC HEC sing 700 n n 
CAC HAC HEC sing 701 n n 
CBC HBC1 HEC sing 702 n n 
CBC HBC2 HEC sing 703 n n 
CBC HBC3 HEC sing 704 n n 
ND C1D HEC sing 705 n y 
ND C4D HEC sing 706 n y 
C1D C2D HEC doub 707 n y 
C2D C3D HEC sing 708 n y 
C2D CMD HEC sing 709 n n 
C3D C4D HEC doub 710 n y 
C3D CAD HEC sing 711 n n 
CMD HMD1 HEC sing 712 n n 
CMD HMD2 HEC sing 713 n n 
CMD HMD3 HEC sing 714 n n 
CAD CBD HEC sing 715 n n 
CAD HAD1 HEC sing 716 n n 
CAD HAD2 HEC sing 717 n n 
CBD CGD HEC sing 718 n n 
CBD HBD1 HEC sing 719 n n 
CBD HBD2 HEC sing 720 n n 
CGD O1D HEC doub 721 n n 
CGD O2D HEC sing 722 n n 
O2D H2D HEC sing 723 n n 
#
_atom_sites.entry_id                     8IBG 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
W 11 HEM AC 1 401 401 HEM HEM . 
X 11 HEM AC 1 402 402 HEM HEM . 
Y 12 UQ6 AC 1 403 506 UQ6 UQ6 . 
Z 13 HEC AD 1 401 395 HEC HEC . 
AA 14 3PE Aa 1 501 535 3PE 3PE . 
BA 11 HEM Ac 1 401 401 HEM HEM . 
CA 11 HEM Ac 1 402 402 HEM HEM . 
DA 14 3PE Ac 1 403 403 3PE 3PE . 
EA 15 U10 Ac 1 404 505 U10 U10 . 
FA 12 UQ6 Ac 1 405 506 UQ6 UQ6 . 
GA 13 HEC Ad 1 401 395 HEC HEC . 
HA 16 3PH Ad 1 402 400 3PH 3PH . 
IA 17 CDL Ag 1 101 102 CDL CDL . 
JA 17 CDL Ag 1 102 103 CDL CDL . 
KA 14 3PE Ag 1 103 104 3PE 3PE . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE HEC . . . Z 13 107.212 163.044 166.063 1 50.59 0 FE HEC 401 AD 1 
HETATM 2 C CHA HEC . . . Z 13 107.496 166.047 167.792 1 52.24 0 CHA HEC 401 AD 1 
HETATM 3 C CHB HEC . . . Z 13 107.6 161.302 169.022 1 49.02 0 CHB HEC 401 AD 1 
HETATM 4 C CHC HEC . . . Z 13 107.056 160.03 164.316 1 53.23 0 CHC HEC 401 AD 1 
HETATM 5 C CHD HEC . . . Z 13 106.534 164.784 163.15 1 58.81 0 CHD HEC 401 AD 1 
HETATM 6 N NA HEC . . . Z 13 107.507 163.585 168.07 1 54.58 0 NA HEC 401 AD 1 
HETATM 7 C C1A HEC . . . Z 13 107.591 164.821 168.602 1 51.4 0 C1A HEC 401 AD 1 
HETATM 8 C C2A HEC . . . Z 13 107.801 164.858 170.072 1 52.28 0 C2A HEC 401 AD 1 
HETATM 9 C C3A HEC . . . Z 13 107.832 163.436 170.437 1 53.47 0 C3A HEC 401 AD 1 
HETATM 10 C C4A HEC . . . Z 13 107.64 162.766 169.131 1 51.86 0 C4A HEC 401 AD 1 
HETATM 11 C CMA HEC . . . Z 13 108.012 162.812 171.795 1 40.97 0 CMA HEC 401 AD 1 
HETATM 12 C CAA HEC . . . Z 13 107.942 166.041 170.994 1 56.01 0 CAA HEC 401 AD 1 
HETATM 13 C CBA HEC . . . Z 13 106.668 166.125 171.828 1 58.51 0 CBA HEC 401 AD 1 
HETATM 14 C CGA HEC . . . Z 13 107.017 166.554 173.231 1 62.81 0 CGA HEC 401 AD 1 
HETATM 15 O O1A HEC . . . Z 13 107.766 167.543 173.382 1 63.66 0 O1A HEC 401 AD 1 
HETATM 16 O O2A HEC . . . Z 13 106.55 165.903 174.19 1 67.24 0 O2A HEC 401 AD 1 
HETATM 17 N NB HEC . . . Z 13 107.319 161.015 166.576 1 53 0 NB HEC 401 AD 1 
HETATM 18 C C1B HEC . . . Z 13 107.474 160.502 167.809 1 51.39 0 C1B HEC 401 AD 1 
HETATM 19 C C2B HEC . . . Z 13 107.51 159.04 167.928 1 53.29 0 C2B HEC 401 AD 1 
HETATM 20 C C3B HEC . . . Z 13 107.336 158.655 166.523 1 55.98 0 C3B HEC 401 AD 1 
HETATM 21 C C4B HEC . . . Z 13 107.222 159.934 165.778 1 51.5 0 C4B HEC 401 AD 1 
HETATM 22 C CMB HEC . . . Z 13 107.694 158.265 169.203 1 48.95 0 CMB HEC 401 AD 1 
HETATM 23 C CAB HEC . . . Z 13 107.265 157.289 165.967 1 53.82 0 CAB HEC 401 AD 1 
HETATM 24 C CBB HEC . . . Z 13 107.402 156.066 166.848 1 31.46 0 CBB HEC 401 AD 1 
HETATM 25 N NC HEC . . . Z 13 106.862 162.497 164.068 1 57.03 0 NC HEC 401 AD 1 
HETATM 26 C C1C HEC . . . Z 13 106.838 161.255 163.522 1 54.55 0 C1C HEC 401 AD 1 
HETATM 27 C C2C HEC . . . Z 13 106.567 161.202 162.059 1 52.87 0 C2C HEC 401 AD 1 
HETATM 28 C C3C HEC . . . Z 13 106.416 162.629 161.748 1 58.57 0 C3C HEC 401 AD 1 
HETATM 29 C C4C HEC . . . Z 13 106.614 163.322 163.033 1 59.92 0 C4C HEC 401 AD 1 
HETATM 30 C CMC HEC . . . Z 13 106.481 160 161.158 1 31.67 0 CMC HEC 401 AD 1 
HETATM 31 C CAC HEC . . . Z 13 106.129 163.293 160.452 1 58.17 0 CAC HEC 401 AD 1 
HETATM 32 C CBC HEC . . . Z 13 105.938 162.516 159.172 1 54.91 0 CBC HEC 401 AD 1 
HETATM 33 N ND HEC . . . Z 13 107.045 165.071 165.558 1 54.29 0 ND HEC 401 AD 1 
HETATM 34 C C1D HEC . . . Z 13 106.762 165.596 164.353 1 58.05 0 C1D HEC 401 AD 1 
HETATM 35 C C2D HEC . . . Z 13 106.703 167.072 164.3 1 57.84 0 C2D HEC 401 AD 1 
HETATM 36 C C3D HEC . . . Z 13 106.991 167.459 165.682 1 57.65 0 C3D HEC 401 AD 1 
HETATM 37 C C4D HEC . . . Z 13 107.175 166.15 166.359 1 56.74 0 C4D HEC 401 AD 1 
HETATM 38 C CMD HEC . . . Z 13 106.411 167.959 163.124 1 47.9 0 CMD HEC 401 AD 1 
HETATM 39 C CAD HEC . . . Z 13 107.062 168.855 166.237 1 53.35 0 CAD HEC 401 AD 1 
HETATM 40 C CBD HEC . . . Z 13 105.824 169.143 167.069 1 49.78 0 CBD HEC 401 AD 1 
HETATM 41 C CGD HEC . . . Z 13 106.082 170.408 167.846 1 54.81 0 CGD HEC 401 AD 1 
HETATM 42 O O1D HEC . . . Z 13 105.102 171.042 168.29 1 59.37 0 O1D HEC 401 AD 1 
HETATM 43 O O2D HEC . . . Z 13 107.266 170.774 168.005 1 57.75 0 O2D HEC 401 AD 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    73 
_model_server_stats.query_time_ms           526 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           43 
#