data_8IBG # _model_server_result.job_id xf3HmiKNSV4s6RIAcsSnAw _model_server_result.datetime_utc '2024-11-30 19:08:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ibg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":403}' # _entry.id 8IBG # _exptl.entry_id 8IBG _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 592.891 _entity.id 12 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-(3,7,11,15,19,23-HEXAMETHYL-TETRACOSA-2,6,10,14,18,22-HEXAENYL)-2,3-DIMETHOXY-6-METHYL-BENZENE-1,4-DIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 22-meric _pdbx_struct_assembly.oligomeric_count 22 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 12 Y N N ? 12 FA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 338 AA CYS 338 1_555 A SG CYS 360 AA CYS 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? disulf ? disulf2 E SG CYS 222 AE CYS 222 1_555 E SG CYS 238 AE CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf3 H SG CYS 51 AH CYS 51 1_555 H SG CYS 65 AH CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf4 L SG CYS 338 Aa CYS 338 1_555 L SG CYS 360 Aa CYS 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? disulf ? disulf5 P SG CYS 222 Ae CYS 222 1_555 P SG CYS 238 Ae CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf6 S SG CYS 35 Ah CYS 35 1_555 S SG CYS 79 Ah CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.849 ? disulf ? disulf7 S SG CYS 51 Ah CYS 51 1_555 S SG CYS 65 Ah CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 C NE2 HIS 83 AC HIS 83 1_555 W FE HEM . AC HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc2 C NE2 HIS 97 AC HIS 97 1_555 X FE HEM . AC HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc3 C NE2 HIS 182 AC HIS 182 1_555 W FE HEM . AC HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.872 ? metalc ? metalc4 C NE2 HIS 196 AC HIS 196 1_555 X FE HEM . AC HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? metalc ? metalc5 D NE2 HIS 125 AD HIS 125 1_555 Z FE HEC . AD HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc6 N NE2 HIS 83 Ac HIS 83 1_555 BA FE HEM . Ac HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc7 N NE2 HIS 97 Ac HIS 97 1_555 CA FE HEM . Ac HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc8 N NE2 HIS 182 Ac HIS 182 1_555 BA FE HEM . Ac HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc9 N NE2 HIS 196 Ac HIS 196 1_555 CA FE HEM . Ac HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc10 O NE2 HIS 125 Ad HIS 125 1_555 GA FE HEC . Ad HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc11 O SD MET 244 Ad MET 244 1_555 GA FE HEC . Ad HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? # _chem_comp.formula 'C39 H60 O4' _chem_comp.formula_weight 592.891 _chem_comp.id UQ6 _chem_comp.mon_nstd_flag . _chem_comp.name 5-(3,7,11,15,19,23-HEXAMETHYL-TETRACOSA-2,6,10,14,18,22-HEXAENYL)-2,3-DIMETHOXY-6-METHYL-BENZENE-1,4-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C1M UQ6 sing 1186 n n C1 C2 UQ6 doub 1187 n y C1 C6 UQ6 sing 1188 n y C1M H1M1 UQ6 sing 1189 n n C1M H1M2 UQ6 sing 1190 n n C1M H1M3 UQ6 sing 1191 n n C2 O2 UQ6 sing 1192 n n C2 C3 UQ6 sing 1193 n y O2 HO2 UQ6 sing 1194 n n C3 C4 UQ6 doub 1195 n y C3 O3 UQ6 sing 1196 n n C4 C5 UQ6 sing 1197 n y C4 O4 UQ6 sing 1198 n n C5 O5 UQ6 sing 1199 n n C5 C6 UQ6 doub 1200 n y O5 HO5 UQ6 sing 1201 n n C6 C7 UQ6 sing 1202 n n O3 C3M UQ6 sing 1203 n n C3M H3M1 UQ6 sing 1204 n n C3M H3M2 UQ6 sing 1205 n n C3M H3M3 UQ6 sing 1206 n n O4 C4M UQ6 sing 1207 n n C4M H4M1 UQ6 sing 1208 n n C4M H4M2 UQ6 sing 1209 n n C4M H4M3 UQ6 sing 1210 n n C7 C8 UQ6 sing 1211 n n C7 H71 UQ6 sing 1212 n n C7 H72 UQ6 sing 1213 n n C8 C9 UQ6 doub 1214 e n C8 H8 UQ6 sing 1215 n n C9 C10 UQ6 sing 1216 n n C9 C11 UQ6 sing 1217 n n C10 H101 UQ6 sing 1218 n n C10 H102 UQ6 sing 1219 n n C10 H103 UQ6 sing 1220 n n C11 C12 UQ6 sing 1221 n n C11 H111 UQ6 sing 1222 n n C11 H112 UQ6 sing 1223 n n C12 C13 UQ6 sing 1224 n n C12 H121 UQ6 sing 1225 n n C12 H122 UQ6 sing 1226 n n C13 C14 UQ6 doub 1227 e n C13 H13 UQ6 sing 1228 n n C14 C15 UQ6 sing 1229 n n C14 C16 UQ6 sing 1230 n n C15 H151 UQ6 sing 1231 n n C15 H152 UQ6 sing 1232 n n C15 H153 UQ6 sing 1233 n n C16 C17 UQ6 sing 1234 n n C16 H161 UQ6 sing 1235 n n C16 H162 UQ6 sing 1236 n n C17 C18 UQ6 sing 1237 n n C17 H171 UQ6 sing 1238 n n C17 H172 UQ6 sing 1239 n n C18 C19 UQ6 doub 1240 z n C18 H18 UQ6 sing 1241 n n C19 C20 UQ6 sing 1242 n n C19 C21 UQ6 sing 1243 n n C20 H201 UQ6 sing 1244 n n C20 H202 UQ6 sing 1245 n n C20 H203 UQ6 sing 1246 n n C21 C22 UQ6 sing 1247 n n C21 H211 UQ6 sing 1248 n n C21 H212 UQ6 sing 1249 n n C22 C23 UQ6 sing 1250 n n C22 H221 UQ6 sing 1251 n n C22 H222 UQ6 sing 1252 n n C23 C24 UQ6 doub 1253 e n C23 H23 UQ6 sing 1254 n n C24 C25 UQ6 sing 1255 n n C24 C26 UQ6 sing 1256 n n C25 H251 UQ6 sing 1257 n n C25 H252 UQ6 sing 1258 n n C25 H253 UQ6 sing 1259 n n C26 C27 UQ6 sing 1260 n n C26 H261 UQ6 sing 1261 n n C26 H262 UQ6 sing 1262 n n C27 C28 UQ6 sing 1263 n n C27 H271 UQ6 sing 1264 n n C27 H272 UQ6 sing 1265 n n C28 C29 UQ6 doub 1266 e n C28 H28 UQ6 sing 1267 n n C29 C30 UQ6 sing 1268 n n C29 C31 UQ6 sing 1269 n n C30 H301 UQ6 sing 1270 n n C30 H302 UQ6 sing 1271 n n C30 H303 UQ6 sing 1272 n n C31 C32 UQ6 sing 1273 n n C31 H311 UQ6 sing 1274 n n C31 H312 UQ6 sing 1275 n n C32 C33 UQ6 sing 1276 n n C32 H321 UQ6 sing 1277 n n C32 H322 UQ6 sing 1278 n n C33 C34 UQ6 doub 1279 n n C33 H33 UQ6 sing 1280 n n C34 C35 UQ6 sing 1281 n n C34 C36 UQ6 sing 1282 n n C35 H351 UQ6 sing 1283 n n C35 H352 UQ6 sing 1284 n n C35 H353 UQ6 sing 1285 n n C36 H361 UQ6 sing 1286 n n C36 H362 UQ6 sing 1287 n n C36 H363 UQ6 sing 1288 n n # _atom_sites.entry_id 8IBG _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code W 11 HEM AC 1 401 401 HEM HEM . X 11 HEM AC 1 402 402 HEM HEM . Y 12 UQ6 AC 1 403 506 UQ6 UQ6 . Z 13 HEC AD 1 401 395 HEC HEC . AA 14 3PE Aa 1 501 535 3PE 3PE . BA 11 HEM Ac 1 401 401 HEM HEM . CA 11 HEM Ac 1 402 402 HEM HEM . DA 14 3PE Ac 1 403 403 3PE 3PE . EA 15 U10 Ac 1 404 505 U10 U10 . FA 12 UQ6 Ac 1 405 506 UQ6 UQ6 . GA 13 HEC Ad 1 401 395 HEC HEC . HA 16 3PH Ad 1 402 400 3PH 3PH . IA 17 CDL Ag 1 101 102 CDL CDL . JA 17 CDL Ag 1 102 103 CDL CDL . KA 14 3PE Ag 1 103 104 3PE 3PE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 UQ6 . . . Y 12 137.912 163.172 213.256 1 81.32 0 C1 UQ6 403 AC 1 HETATM 2 C C1M UQ6 . . . Y 12 139.258 163.781 212.977 1 81.77 0 C1M UQ6 403 AC 1 HETATM 3 C C2 UQ6 . . . Y 12 137.575 162.728 214.631 1 80.94 0 C2 UQ6 403 AC 1 HETATM 4 O O2 UQ6 . . . Y 12 138.486 162.875 215.628 1 80.01 0 O2 UQ6 403 AC 1 HETATM 5 C C3 UQ6 . . . Y 12 136.247 162.129 214.917 1 79.48 0 C3 UQ6 403 AC 1 HETATM 6 C C4 UQ6 . . . Y 12 135.256 161.966 213.823 1 79.8 0 C4 UQ6 403 AC 1 HETATM 7 C C5 UQ6 . . . Y 12 135.592 162.411 212.445 1 80.22 0 C5 UQ6 403 AC 1 HETATM 8 O O5 UQ6 . . . Y 12 134.684 162.267 211.441 1 78.81 0 O5 UQ6 403 AC 1 HETATM 9 C C6 UQ6 . . . Y 12 136.919 163.015 212.164 1 81.09 0 C6 UQ6 403 AC 1 HETATM 10 O O3 UQ6 . . . Y 12 135.947 161.72 216.188 1 79.25 0 O3 UQ6 403 AC 1 HETATM 11 C C3M UQ6 . . . Y 12 135.023 162.458 216.98 1 75.99 0 C3M UQ6 403 AC 1 HETATM 12 O O4 UQ6 . . . Y 12 134.029 161.415 214.082 1 82.24 0 O4 UQ6 403 AC 1 HETATM 13 C C4M UQ6 . . . Y 12 133.721 160.093 213.65 1 83.81 0 C4M UQ6 403 AC 1 HETATM 14 C C7 UQ6 . . . Y 12 137.259 163.454 210.764 1 82.47 0 C7 UQ6 403 AC 1 HETATM 15 C C8 UQ6 . . . Y 12 137.386 162.198 209.939 1 83.82 0 C8 UQ6 403 AC 1 HETATM 16 C C9 UQ6 . . . Y 12 137.546 162.246 208.614 1 84.36 0 C9 UQ6 403 AC 1 HETATM 17 C C10 UQ6 . . . Y 12 137.667 160.954 207.861 1 85.9 0 C10 UQ6 403 AC 1 HETATM 18 C C11 UQ6 . . . Y 12 137.627 163.592 207.926 1 84.41 0 C11 UQ6 403 AC 1 HETATM 19 C C12 UQ6 . . . Y 12 136.674 163.697 206.74 1 85.14 0 C12 UQ6 403 AC 1 HETATM 20 C C13 UQ6 . . . Y 12 137.197 162.918 205.559 1 84.83 0 C13 UQ6 403 AC 1 HETATM 21 C C14 UQ6 . . . Y 12 137.763 163.532 204.514 1 85.43 0 C14 UQ6 403 AC 1 HETATM 22 C C15 UQ6 . . . Y 12 138.271 162.72 203.361 1 85.75 0 C15 UQ6 403 AC 1 HETATM 23 C C16 UQ6 . . . Y 12 137.898 165.034 204.485 1 86.14 0 C16 UQ6 403 AC 1 HETATM 24 C C17 UQ6 . . . Y 12 137.787 165.497 203.038 1 88.03 0 C17 UQ6 403 AC 1 HETATM 25 C C18 UQ6 . . . Y 12 138.412 166.863 202.895 1 89.21 0 C18 UQ6 403 AC 1 HETATM 26 C C19 UQ6 . . . Y 12 139.618 166.977 202.323 1 90.72 0 C19 UQ6 403 AC 1 HETATM 27 C C20 UQ6 . . . Y 12 140.259 168.323 202.175 1 92.61 0 C20 UQ6 403 AC 1 HETATM 28 C C21 UQ6 . . . Y 12 140.337 165.744 201.83 1 90.49 0 C21 UQ6 403 AC 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 42 _model_server_stats.query_time_ms 356 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 28 #