data_8IC3 # _model_server_result.job_id 8KWGima4e_4P4qn4Sneqhg _model_server_result.datetime_utc '2024-11-27 21:38:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ic3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"MA","auth_seq_id":401}' # _entry.id 8IC3 # _exptl.entry_id 8IC3 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 745.421 _entity.id 31 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 23-meric _pdbx_struct_assembly.oligomeric_count 23 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 31 _struct_asym.id MA _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 M SG CYS 24 S CYS 24 1_555 M SG CYS 58 S CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 Q SG CYS 36 X CYS 36 1_555 Q SG CYS 66 X CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? disulf ? disulf3 Q SG CYS 46 X CYS 46 1_555 Q SG CYS 56 X CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 Q SG CYS 88 X CYS 88 1_555 Q SG CYS 100 X CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc1 B SG CYS 99 B CYS 99 1_555 X FE1 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc2 B SG CYS 100 B CYS 100 1_555 X FE4 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? metalc ? metalc3 B SG CYS 194 B CYS 194 1_555 X FE3 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc4 E SG CYS 134 E CYS 134 1_555 AA FE1 FES . E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.91 ? metalc ? metalc5 E SG CYS 139 E CYS 139 1_555 AA FE1 FES . E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? metalc ? metalc6 F SG CYS 385 F CYS 385 1_555 CA FE3 SF4 . F SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc7 G SG CYS 75 G CYS 75 1_555 FA FE1 FES . G FES 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.921 ? metalc ? metalc8 G SG CYS 92 G CYS 92 1_555 FA FE2 FES . G FES 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.664 ? metalc ? metalc9 G NE2 HIS 124 G HIS 124 1_555 DA FE1 SF4 . G SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? metalc ? metalc10 G SG CYS 128 G CYS 128 1_555 DA FE3 SF4 . G SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc11 G SG CYS 137 G CYS 137 1_555 DA FE4 SF4 . G SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc12 G SG CYS 179 G CYS 179 1_555 EA FE3 SF4 . G SF4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.937 ? metalc ? metalc13 G SG CYS 182 G CYS 182 1_555 EA FE2 SF4 . G SF4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc14 G SG CYS 226 G CYS 226 1_555 EA FE1 SF4 . G SF4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.926 ? metalc ? metalc15 I SG CYS 116 I CYS 116 1_555 LA FE1 SF4 . I SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.931 ? metalc ? metalc16 I SG CYS 119 I CYS 119 1_555 LA FE2 SF4 . I SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.91 ? metalc ? metalc17 I SG CYS 123 I CYS 123 1_555 KA FE1 SF4 . I SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc18 I SG CYS 152 I CYS 152 1_555 KA FE2 SF4 . I SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc19 I SG CYS 155 I CYS 155 1_555 KA FE4 SF4 . I SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc20 I SG CYS 158 I CYS 158 1_555 KA FE3 SF4 . I SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc21 L SG CYS 79 R CYS 79 1_555 NA ZN ZN . R ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? metalc ? metalc22 L NE2 HIS 88 R HIS 88 1_555 NA ZN ZN . R ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.791 ? metalc ? metalc23 L SG CYS 104 R CYS 104 1_555 NA ZN ZN . R ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc24 L SG CYS 107 R CYS 107 1_555 NA ZN ZN . R ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 766 n n PA O2A NDP sing 767 n n PA O5B NDP sing 768 n n PA O3 NDP sing 769 n n O2A HOA2 NDP sing 770 n n O5B C5B NDP sing 771 n n C5B C4B NDP sing 772 n n C5B H51A NDP sing 773 n n C5B H52A NDP sing 774 n n C4B O4B NDP sing 775 n n C4B C3B NDP sing 776 n n C4B H4B NDP sing 777 n n O4B C1B NDP sing 778 n n C3B O3B NDP sing 779 n n C3B C2B NDP sing 780 n n C3B H3B NDP sing 781 n n O3B HO3A NDP sing 782 n n C2B O2B NDP sing 783 n n C2B C1B NDP sing 784 n n C2B H2B NDP sing 785 n n O2B P2B NDP sing 786 n n C1B N9A NDP sing 787 n n C1B H1B NDP sing 788 n n N9A C8A NDP sing 789 n y N9A C4A NDP sing 790 n y C8A N7A NDP doub 791 n y C8A H8A NDP sing 792 n n N7A C5A NDP sing 793 n y C5A C6A NDP sing 794 n y C5A C4A NDP doub 795 n y C6A N6A NDP sing 796 n n C6A N1A NDP doub 797 n y N6A H61A NDP sing 798 n n N6A H62A NDP sing 799 n n N1A C2A NDP sing 800 n y C2A N3A NDP doub 801 n y C2A H2A NDP sing 802 n n N3A C4A NDP sing 803 n y O3 PN NDP sing 804 n n PN O1N NDP doub 805 n n PN O2N NDP sing 806 n n PN O5D NDP sing 807 n n O2N H21N NDP sing 808 n n O5D C5D NDP sing 809 n n C5D C4D NDP sing 810 n n C5D H51N NDP sing 811 n n C5D H52N NDP sing 812 n n C4D O4D NDP sing 813 n n C4D C3D NDP sing 814 n n C4D H4D NDP sing 815 n n O4D C1D NDP sing 816 n n C3D O3D NDP sing 817 n n C3D C2D NDP sing 818 n n C3D H3D NDP sing 819 n n O3D HO3N NDP sing 820 n n C2D O2D NDP sing 821 n n C2D C1D NDP sing 822 n n C2D H2D NDP sing 823 n n O2D HO2N NDP sing 824 n n C1D N1N NDP sing 825 n n C1D H1D NDP sing 826 n n N1N C2N NDP sing 827 n n N1N C6N NDP sing 828 n n C2N C3N NDP doub 829 n n C2N H2N NDP sing 830 n n C3N C7N NDP sing 831 n n C3N C4N NDP sing 832 n n C7N O7N NDP doub 833 n n C7N N7N NDP sing 834 n n N7N H71N NDP sing 835 n n N7N H72N NDP sing 836 n n C4N C5N NDP sing 837 n n C4N H41N NDP sing 838 n n C4N H42N NDP sing 839 n n C5N C6N NDP doub 840 n n C5N H5N NDP sing 841 n n C6N H6N NDP sing 842 n n P2B O1X NDP doub 843 n n P2B O2X NDP sing 844 n n P2B O3X NDP sing 845 n n O2X HOP2 NDP sing 846 n n O3X HOP3 NDP sing 847 n n # _atom_sites.entry_id 8IC3 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code X 24 SF4 B 1 301 236 SF4 SF4 . Y 25 UQ1 B 1 302 501 UQ1 UQ1 . Z 26 PC1 B 1 303 406 PC1 PC1 . AA 27 FES E 1 301 332 FES FES . BA 28 FMN F 1 501 521 FMN FMN . CA 24 SF4 F 1 502 522 SF4 SF4 . DA 24 SF4 G 1 801 824 SF4 SF4 . EA 24 SF4 G 1 802 825 SF4 SF4 . FA 27 FES G 1 803 826 FES FES . GA 29 UQ9 H 1 401 400 UQ9 UQ9 . HA 30 3PE H 1 402 401 3PE 3PE . IA 30 3PE H 1 403 403 3PE 3PE . JA 26 PC1 I 1 301 404 PC1 PC1 . KA 24 SF4 I 1 302 235 SF4 SF4 . LA 24 SF4 I 1 303 236 SF4 SF4 . MA 31 NDP P 1 401 536 NDP NDP . NA 32 ZN R 1 201 221 ZN ZN . OA 33 EHZ W 1 201 201 EHZ EHZ . PA 34 CDL q 1 201 405 CDL CDL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . MA 31 246.976 169.132 203.237 1 42.05 0 PA NDP 401 P 1 HETATM 2 O O1A NDP . . . MA 31 246.369 168.7 201.929 1 42.05 -1 O1A NDP 401 P 1 HETATM 3 O O2A NDP . . . MA 31 247.347 170.577 203.456 1 42.05 0 O2A NDP 401 P 1 HETATM 4 O O5B NDP . . . MA 31 248.27 168.222 203.511 1 42.05 0 O5B NDP 401 P 1 HETATM 5 C C5B NDP . . . MA 31 248.733 168.054 204.847 1 42.05 0 C5B NDP 401 P 1 HETATM 6 C C4B NDP . . . MA 31 250.189 167.616 204.838 1 42.05 0 C4B NDP 401 P 1 HETATM 7 O O4B NDP . . . MA 31 250.325 166.266 204.387 1 42.05 0 O4B NDP 401 P 1 HETATM 8 C C3B NDP . . . MA 31 251.013 168.478 203.903 1 42.05 0 C3B NDP 401 P 1 HETATM 9 O O3B NDP . . . MA 31 252.1 169.06 204.615 1 42.05 0 O3B NDP 401 P 1 HETATM 10 C C2B NDP . . . MA 31 251.524 167.537 202.842 1 42.05 0 C2B NDP 401 P 1 HETATM 11 O O2B NDP . . . MA 31 252.853 167.855 202.457 1 42.05 0 O2B NDP 401 P 1 HETATM 12 C C1B NDP . . . MA 31 251.443 166.181 203.505 1 42.05 0 C1B NDP 401 P 1 HETATM 13 N N9A NDP . . . MA 31 251.249 165.122 202.494 1 42.05 0 N9A NDP 401 P 1 HETATM 14 C C8A NDP . . . MA 31 250.155 164.937 201.737 1 42.05 0 C8A NDP 401 P 1 HETATM 15 N N7A NDP . . . MA 31 250.318 163.871 200.912 1 42.05 0 N7A NDP 401 P 1 HETATM 16 C C5A NDP . . . MA 31 251.54 163.362 201.141 1 42.05 0 C5A NDP 401 P 1 HETATM 17 C C6A NDP . . . MA 31 252.346 162.236 200.617 1 42.05 0 C6A NDP 401 P 1 HETATM 18 N N6A NDP . . . MA 31 251.862 161.417 199.652 1 42.05 0 N6A NDP 401 P 1 HETATM 19 N N1A NDP . . . MA 31 253.579 162.053 201.134 1 42.05 0 N1A NDP 401 P 1 HETATM 20 C C2A NDP . . . MA 31 254.07 162.857 202.092 1 42.05 0 C2A NDP 401 P 1 HETATM 21 N N3A NDP . . . MA 31 253.395 163.894 202.612 1 42.05 0 N3A NDP 401 P 1 HETATM 22 C C4A NDP . . . MA 31 252.148 164.193 202.185 1 42.05 0 C4A NDP 401 P 1 HETATM 23 O O3 NDP . . . MA 31 245.999 168.659 204.422 1 42.05 0 O3 NDP 401 P 1 HETATM 24 P PN NDP . . . MA 31 245.568 169.669 205.594 1 42.05 0 PN NDP 401 P 1 HETATM 25 O O1N NDP . . . MA 31 246.801 170.352 206.133 1 42.05 -1 O1N NDP 401 P 1 HETATM 26 O O2N NDP . . . MA 31 244.404 170.493 205.102 1 42.05 0 O2N NDP 401 P 1 HETATM 27 O O5D NDP . . . MA 31 245.03 168.651 206.714 1 42.05 0 O5D NDP 401 P 1 HETATM 28 C C5D NDP . . . MA 31 245.942 168.014 207.602 1 42.05 0 C5D NDP 401 P 1 HETATM 29 C C4D NDP . . . MA 31 245.352 166.675 208.013 1 42.05 0 C4D NDP 401 P 1 HETATM 30 O O4D NDP . . . MA 31 244.101 166.875 208.667 1 42.05 0 O4D NDP 401 P 1 HETATM 31 C C3D NDP . . . MA 31 245.101 165.79 206.808 1 42.05 0 C3D NDP 401 P 1 HETATM 32 O O3D NDP . . . MA 31 245.906 164.615 206.901 1 42.05 0 O3D NDP 401 P 1 HETATM 33 C C2D NDP . . . MA 31 243.632 165.438 206.841 1 42.05 0 C2D NDP 401 P 1 HETATM 34 O O2D NDP . . . MA 31 243.433 164.027 206.75 1 42.05 0 O2D NDP 401 P 1 HETATM 35 C C1D NDP . . . MA 31 243.123 165.961 208.17 1 42.05 0 C1D NDP 401 P 1 HETATM 36 N N1N NDP . . . MA 31 241.845 166.65 208.004 1 42.05 0 N1N NDP 401 P 1 HETATM 37 C C2N NDP . . . MA 31 241.77 167.711 207.199 1 42.05 0 C2N NDP 401 P 1 HETATM 38 C C3N NDP . . . MA 31 240.579 168.398 207.013 1 42.05 0 C3N NDP 401 P 1 HETATM 39 C C7N NDP . . . MA 31 240.547 169.583 206.098 1 42.05 0 C7N NDP 401 P 1 HETATM 40 O O7N NDP . . . MA 31 240.221 169.432 204.934 1 42.05 0 O7N NDP 401 P 1 HETATM 41 N N7N NDP . . . MA 31 240.872 170.777 206.585 1 42.05 0 N7N NDP 401 P 1 HETATM 42 C C4N NDP . . . MA 31 239.314 167.98 207.717 1 42.05 0 C4N NDP 401 P 1 HETATM 43 C C5N NDP . . . MA 31 239.538 166.818 208.561 1 42.05 0 C5N NDP 401 P 1 HETATM 44 C C6N NDP . . . MA 31 240.778 166.206 208.669 1 42.05 0 C6N NDP 401 P 1 HETATM 45 P P2B NDP . . . MA 31 253.184 168.053 200.898 1 42.05 0 P2B NDP 401 P 1 HETATM 46 O O1X NDP . . . MA 31 252.008 168.847 200.391 1 42.05 0 O1X NDP 401 P 1 HETATM 47 O O2X NDP . . . MA 31 253.265 166.642 200.369 1 42.05 -1 O2X NDP 401 P 1 HETATM 48 O O3X NDP . . . MA 31 254.497 168.797 200.882 1 42.05 0 O3X NDP 401 P 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 50 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 48 #