data_8IC5
#
_model_server_result.job_id            XyaJLzclt17OMcT1xquaRQ 
_model_server_result.datetime_utc      '2024-11-05 05:01:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ic5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"BA","auth_seq_id":402}' 
#
_entry.id    8IC5 
#
_exptl.entry_id    8IC5 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          11 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    21-meric 
_pdbx_struct_assembly.oligomeric_count      21 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 11 V N N 
? 11 W N N 
? 11 BA N N 
? 11 CA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 338 AA CYS 338 1_555 A SG CYS 360 AA CYS 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
disulf ? disulf2 E SG CYS 222 AE CYS 222 1_555 E SG CYS 238 AE CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
disulf ? disulf3 H SG CYS 51 AH CYS 51 1_555 H SG CYS 65 AH CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf4 L SG CYS 338 Aa CYS 338 1_555 L SG CYS 360 Aa CYS 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf5 P SG CYS 222 Ae CYS 222 1_555 P SG CYS 238 Ae CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
disulf ? disulf6 S SG CYS 35 Ah CYS 35 1_555 S SG CYS 79 Ah CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? 
disulf ? disulf7 S SG CYS 51 Ah CYS 51 1_555 S SG CYS 65 Ah CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
covale ? covale1 D SG CYS 121 AD CYS 121 1_555 Y CAB HEC . AD HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.905 ? 
covale ? covale2 O SG CYS 121 Ad CYS 121 1_555 GA CAB HEC . Ad HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.906 ? 
metalc ? metalc1 C NE2 HIS 83 AC HIS 83 1_555 V FE HEM . AC HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
metalc ? metalc2 C NE2 HIS 97 AC HIS 97 1_555 W FE HEM . AC HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.898 ? 
metalc ? metalc3 C NE2 HIS 182 AC HIS 182 1_555 V FE HEM . AC HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? 
metalc ? metalc4 C NE2 HIS 196 AC HIS 196 1_555 W FE HEM . AC HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? 
metalc ? metalc5 D NE2 HIS 125 AD HIS 125 1_555 Y FE HEC . AD HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? 
metalc ? metalc6 D SD MET 244 AD MET 244 1_555 Y FE HEC . AD HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? 
metalc ? metalc7 N NE2 HIS 83 Ac HIS 83 1_555 BA FE HEM . Ac HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
metalc ? metalc8 N NE2 HIS 97 Ac HIS 97 1_555 CA FE HEM . Ac HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? 
metalc ? metalc9 N NE2 HIS 182 Ac HIS 182 1_555 BA FE HEM . Ac HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
metalc ? metalc10 N NE2 HIS 196 Ac HIS 196 1_555 CA FE HEM . Ac HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
metalc ? metalc11 O NE2 HIS 125 Ad HIS 125 1_555 GA FE HEC . Ad HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? 
metalc ? metalc12 O SD MET 244 Ad MET 244 1_555 GA FE HEC . Ad HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 600 n n 
CHA C4D HEM doub 601 n n 
CHA HHA HEM sing 602 n n 
CHB C4A HEM sing 603 n n 
CHB C1B HEM doub 604 n n 
CHB HHB HEM sing 605 n n 
CHC C4B HEM sing 606 n n 
CHC C1C HEM doub 607 n n 
CHC HHC HEM sing 608 n n 
CHD C4C HEM doub 609 n n 
CHD C1D HEM sing 610 n n 
CHD HHD HEM sing 611 n n 
C1A C2A HEM doub 612 n y 
C1A NA HEM sing 613 n y 
C2A C3A HEM sing 614 n y 
C2A CAA HEM sing 615 n n 
C3A C4A HEM doub 616 n y 
C3A CMA HEM sing 617 n n 
C4A NA HEM sing 618 n y 
CMA HMA HEM sing 619 n n 
CMA HMAA HEM sing 620 n n 
CMA HMAB HEM sing 621 n n 
CAA CBA HEM sing 622 n n 
CAA HAA HEM sing 623 n n 
CAA HAAA HEM sing 624 n n 
CBA CGA HEM sing 625 n n 
CBA HBA HEM sing 626 n n 
CBA HBAA HEM sing 627 n n 
CGA O1A HEM doub 628 n n 
CGA O2A HEM sing 629 n n 
C1B C2B HEM sing 630 n n 
C1B NB HEM sing 631 n n 
C2B C3B HEM doub 632 n n 
C2B CMB HEM sing 633 n n 
C3B C4B HEM sing 634 n n 
C3B CAB HEM sing 635 n n 
C4B NB HEM doub 636 n n 
CMB HMB HEM sing 637 n n 
CMB HMBA HEM sing 638 n n 
CMB HMBB HEM sing 639 n n 
CAB CBB HEM doub 640 n n 
CAB HAB HEM sing 641 n n 
CBB HBB HEM sing 642 n n 
CBB HBBA HEM sing 643 n n 
C1C C2C HEM sing 644 n y 
C1C NC HEM sing 645 n y 
C2C C3C HEM doub 646 n y 
C2C CMC HEM sing 647 n n 
C3C C4C HEM sing 648 n y 
C3C CAC HEM sing 649 n n 
C4C NC HEM sing 650 n y 
CMC HMC HEM sing 651 n n 
CMC HMCA HEM sing 652 n n 
CMC HMCB HEM sing 653 n n 
CAC CBC HEM doub 654 n n 
CAC HAC HEM sing 655 n n 
CBC HBC HEM sing 656 n n 
CBC HBCA HEM sing 657 n n 
C1D C2D HEM sing 658 n n 
C1D ND HEM doub 659 n n 
C2D C3D HEM doub 660 n n 
C2D CMD HEM sing 661 n n 
C3D C4D HEM sing 662 n n 
C3D CAD HEM sing 663 n n 
C4D ND HEM sing 664 n n 
CMD HMD HEM sing 665 n n 
CMD HMDA HEM sing 666 n n 
CMD HMDB HEM sing 667 n n 
CAD CBD HEM sing 668 n n 
CAD HAD HEM sing 669 n n 
CAD HADA HEM sing 670 n n 
CBD CGD HEM sing 671 n n 
CBD HBD HEM sing 672 n n 
CBD HBDA HEM sing 673 n n 
CGD O1D HEM doub 674 n n 
CGD O2D HEM sing 675 n n 
O2A H2A HEM sing 676 n n 
O2D H2D HEM sing 677 n n 
FE NA HEM sing 678 n n 
FE NB HEM sing 679 n n 
FE NC HEM sing 680 n n 
FE ND HEM sing 681 n n 
#
_atom_sites.entry_id                     8IC5 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
V 11 HEM AC 1 401 401 HEM HEM . 
W 11 HEM AC 1 402 402 HEM HEM . 
X 12 UQ6 AC 1 403 506 UQ6 UQ6 . 
Y 13 HEC AD 1 401 395 HEC HEC . 
Z 14 CDL Aa 1 501 536 CDL CDL . 
AA 15 3PE Ac 1 401 535 3PE 3PE . 
BA 11 HEM Ac 1 402 401 HEM HEM . 
CA 11 HEM Ac 1 403 402 HEM HEM . 
DA 15 3PE Ac 1 404 403 3PE 3PE . 
EA 16 U10 Ac 1 405 505 U10 U10 . 
FA 12 UQ6 Ac 1 406 506 UQ6 UQ6 . 
GA 13 HEC Ad 1 401 395 HEC HEC . 
HA 14 CDL Ag 1 101 102 CDL CDL . 
IA 14 CDL Ag 1 102 103 CDL CDL . 
JA 15 3PE Ag 1 103 104 3PE 3PE . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . BA 11 143.515 175.195 186.313 1 36.62 0 CHA HEM 402 Ac 1 
HETATM 2 C CHB HEM . . . BA 11 141.208 173.068 190.01 1 29.58 0 CHB HEM 402 Ac 1 
HETATM 3 C CHC HEM . . . BA 11 144.939 174.209 192.93 1 32.52 0 CHC HEM 402 Ac 1 
HETATM 4 C CHD HEM . . . BA 11 147.422 175.803 189.074 1 24.05 0 CHD HEM 402 Ac 1 
HETATM 5 C C1A HEM . . . BA 11 142.585 174.544 187.098 1 49.3 0 C1A HEM 402 Ac 1 
HETATM 6 C C2A HEM . . . BA 11 141.325 174.131 186.621 1 35.8 0 C2A HEM 402 Ac 1 
HETATM 7 C C3A HEM . . . BA 11 140.668 173.533 187.642 1 35.96 0 C3A HEM 402 Ac 1 
HETATM 8 C C4A HEM . . . BA 11 141.51 173.572 188.768 1 36.75 0 C4A HEM 402 Ac 1 
HETATM 9 C CMA HEM . . . BA 11 139.287 172.935 187.583 1 36.63 0 CMA HEM 402 Ac 1 
HETATM 10 C CAA HEM . . . BA 11 140.794 174.298 185.22 1 44.31 0 CAA HEM 402 Ac 1 
HETATM 11 C CBA HEM . . . BA 11 140.106 175.65 185.052 1 44.71 0 CBA HEM 402 Ac 1 
HETATM 12 C CGA HEM . . . BA 11 141.043 176.601 184.356 1 48.38 0 CGA HEM 402 Ac 1 
HETATM 13 O O1A HEM . . . BA 11 141.307 176.439 183.193 1 53.33 0 O1A HEM 402 Ac 1 
HETATM 14 O O2A HEM . . . BA 11 141.581 177.622 185.031 1 53.28 0 O2A HEM 402 Ac 1 
HETATM 15 C C1B HEM . . . BA 11 142.066 173.247 191.098 1 32.48 0 C1B HEM 402 Ac 1 
HETATM 16 C C2B HEM . . . BA 11 141.685 172.819 192.393 1 24.66 0 C2B HEM 402 Ac 1 
HETATM 17 C C3B HEM . . . BA 11 142.703 173.12 193.242 1 33.73 0 C3B HEM 402 Ac 1 
HETATM 18 C C4B HEM . . . BA 11 143.737 173.761 192.4 1 32.62 0 C4B HEM 402 Ac 1 
HETATM 19 C CMB HEM . . . BA 11 140.38 172.151 192.734 1 11.9 0 CMB HEM 402 Ac 1 
HETATM 20 C CAB HEM . . . BA 11 142.788 172.886 194.699 1 43.91 0 CAB HEM 402 Ac 1 
HETATM 21 C CBB HEM . . . BA 11 142.817 171.674 195.238 1 50.9 0 CBB HEM 402 Ac 1 
HETATM 22 C C1C HEM . . . BA 11 145.94 174.715 192.125 1 29.36 0 C1C HEM 402 Ac 1 
HETATM 23 C C2C HEM . . . BA 11 147.206 175.096 192.569 1 31.24 0 C2C HEM 402 Ac 1 
HETATM 24 C C3C HEM . . . BA 11 147.9 175.549 191.463 1 27.8 0 C3C HEM 402 Ac 1 
HETATM 25 C C4C HEM . . . BA 11 147.04 175.44 190.342 1 33.04 0 C4C HEM 402 Ac 1 
HETATM 26 C CMC HEM . . . BA 11 147.709 175.02 193.99 1 26.35 0 CMC HEM 402 Ac 1 
HETATM 27 C CAC HEM . . . BA 11 149.282 176.06 191.444 1 33.29 0 CAC HEM 402 Ac 1 
HETATM 28 C CBC HEM . . . BA 11 150.311 175.224 191.525 1 33.63 0 CBC HEM 402 Ac 1 
HETATM 29 C C1D HEM . . . BA 11 146.541 175.791 188.002 1 31.51 0 C1D HEM 402 Ac 1 
HETATM 30 C C2D HEM . . . BA 11 146.898 176.286 186.674 1 32.6 0 C2D HEM 402 Ac 1 
HETATM 31 C C3D HEM . . . BA 11 145.813 176.122 185.904 1 29.78 0 C3D HEM 402 Ac 1 
HETATM 32 C C4D HEM . . . BA 11 144.789 175.516 186.761 1 34.15 0 C4D HEM 402 Ac 1 
HETATM 33 C CMD HEM . . . BA 11 148.221 176.871 186.251 1 24.17 0 CMD HEM 402 Ac 1 
HETATM 34 C CAD HEM . . . BA 11 145.686 176.5 184.451 1 32.52 0 CAD HEM 402 Ac 1 
HETATM 35 C CBD HEM . . . BA 11 144.99 177.861 184.382 1 45.02 0 CBD HEM 402 Ac 1 
HETATM 36 C CGD HEM . . . BA 11 144.816 178.288 182.951 1 47.94 0 CGD HEM 402 Ac 1 
HETATM 37 O O1D HEM . . . BA 11 145.563 179.103 182.472 1 53.35 0 O1D HEM 402 Ac 1 
HETATM 38 O O2D HEM . . . BA 11 143.824 177.768 182.213 1 51.57 0 O2D HEM 402 Ac 1 
HETATM 39 N NA HEM . . . BA 11 142.676 174.189 188.425 1 44.42 0 NA HEM 402 Ac 1 
HETATM 40 N NB HEM . . . BA 11 143.292 173.802 191.134 1 32.01 0 NB HEM 402 Ac 1 
HETATM 41 N NC HEM . . . BA 11 145.837 174.919 190.775 1 47.54 0 NC HEM 402 Ac 1 
HETATM 42 N ND HEM . . . BA 11 145.284 175.348 187.991 1 30.58 0 ND HEM 402 Ac 1 
HETATM 43 FE FE HEM . . . BA 11 144.284 174.567 189.555 1 13.23 0 FE HEM 402 Ac 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    53 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           43 
#