data_8IC5 # _model_server_result.job_id 1YIUxvO6gUMv2CDj2Nf4Mg _model_server_result.datetime_utc '2024-11-05 05:00:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ic5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"DA","auth_seq_id":404}' # _entry.id 8IC5 # _exptl.entry_id 8IC5 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 748.065 _entity.id 15 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-Distearoyl-sn-glycerophosphoethanolamine _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 21-meric _pdbx_struct_assembly.oligomeric_count 21 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 15 AA N N ? 15 DA N N ? 15 JA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 338 AA CYS 338 1_555 A SG CYS 360 AA CYS 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? disulf ? disulf2 E SG CYS 222 AE CYS 222 1_555 E SG CYS 238 AE CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf3 H SG CYS 51 AH CYS 51 1_555 H SG CYS 65 AH CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf4 L SG CYS 338 Aa CYS 338 1_555 L SG CYS 360 Aa CYS 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 P SG CYS 222 Ae CYS 222 1_555 P SG CYS 238 Ae CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf6 S SG CYS 35 Ah CYS 35 1_555 S SG CYS 79 Ah CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? disulf ? disulf7 S SG CYS 51 Ah CYS 51 1_555 S SG CYS 65 Ah CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? covale ? covale1 D SG CYS 121 AD CYS 121 1_555 Y CAB HEC . AD HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.905 ? covale ? covale2 O SG CYS 121 Ad CYS 121 1_555 GA CAB HEC . Ad HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.906 ? metalc ? metalc1 C NE2 HIS 83 AC HIS 83 1_555 V FE HEM . AC HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc2 C NE2 HIS 97 AC HIS 97 1_555 W FE HEM . AC HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.898 ? metalc ? metalc3 C NE2 HIS 182 AC HIS 182 1_555 V FE HEM . AC HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc4 C NE2 HIS 196 AC HIS 196 1_555 W FE HEM . AC HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc5 D NE2 HIS 125 AD HIS 125 1_555 Y FE HEC . AD HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc6 D SD MET 244 AD MET 244 1_555 Y FE HEC . AD HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc7 N NE2 HIS 83 Ac HIS 83 1_555 BA FE HEM . Ac HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc8 N NE2 HIS 97 Ac HIS 97 1_555 CA FE HEM . Ac HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc9 N NE2 HIS 182 Ac HIS 182 1_555 BA FE HEM . Ac HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc10 N NE2 HIS 196 Ac HIS 196 1_555 CA FE HEM . Ac HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc11 O NE2 HIS 125 Ad HIS 125 1_555 GA FE HEC . Ad HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc12 O SD MET 244 Ad MET 244 1_555 GA FE HEC . Ad HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? # _chem_comp.formula 'C41 H82 N O8 P' _chem_comp.formula_weight 748.065 _chem_comp.id 3PE _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-Distearoyl-sn-glycerophosphoethanolamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-SN-PHOSPHATIDYLETHANOLAMINE;1,2-DIACYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O11 3PE sing 1 n n P O12 3PE sing 2 n n P O13 3PE sing 3 n n P O14 3PE doub 4 n n N C12 3PE sing 5 n n N HN1 3PE sing 6 n n N HN2 3PE sing 7 n n O11 C1 3PE sing 8 n n O13 C11 3PE sing 9 n n C11 C12 3PE sing 10 n n C11 H111 3PE sing 11 n n C11 H112 3PE sing 12 n n C12 H121 3PE sing 13 n n C12 H122 3PE sing 14 n n C1 C2 3PE sing 15 n n C1 H11 3PE sing 16 n n C1 H12 3PE sing 17 n n C2 C3 3PE sing 18 n n C2 O21 3PE sing 19 n n C2 H2 3PE sing 20 n n C3 O31 3PE sing 21 n n C3 H31 3PE sing 22 n n C3 H32 3PE sing 23 n n O31 C31 3PE sing 24 n n O32 C31 3PE doub 25 n n C31 C32 3PE sing 26 n n C32 C33 3PE sing 27 n n C32 H321 3PE sing 28 n n C32 H322 3PE sing 29 n n C33 C34 3PE sing 30 n n C33 H331 3PE sing 31 n n C33 H332 3PE sing 32 n n C34 C35 3PE sing 33 n n C34 H341 3PE sing 34 n n C34 H342 3PE sing 35 n n C35 C36 3PE sing 36 n n C35 H351 3PE sing 37 n n C35 H352 3PE sing 38 n n C36 C37 3PE sing 39 n n C36 H361 3PE sing 40 n n C36 H362 3PE sing 41 n n C37 C38 3PE sing 42 n n C37 H371 3PE sing 43 n n C37 H372 3PE sing 44 n n C38 C39 3PE sing 45 n n C38 H381 3PE sing 46 n n C38 H382 3PE sing 47 n n C39 C3A 3PE sing 48 n n C39 H391 3PE sing 49 n n C39 H392 3PE sing 50 n n C3A C3B 3PE sing 51 n n C3A H3A1 3PE sing 52 n n C3A H3A2 3PE sing 53 n n C3B C3C 3PE sing 54 n n C3B H3B1 3PE sing 55 n n C3B H3B2 3PE sing 56 n n C3C C3D 3PE sing 57 n n C3C H3C1 3PE sing 58 n n C3C H3C2 3PE sing 59 n n C3D C3E 3PE sing 60 n n C3D H3D1 3PE sing 61 n n C3D H3D2 3PE sing 62 n n C3E C3F 3PE sing 63 n n C3E H3E1 3PE sing 64 n n C3E H3E2 3PE sing 65 n n C3F C3G 3PE sing 66 n n C3F H3F1 3PE sing 67 n n C3F H3F2 3PE sing 68 n n C3G C3H 3PE sing 69 n n C3G H3G1 3PE sing 70 n n C3G H3G2 3PE sing 71 n n C3H C3I 3PE sing 72 n n C3H H3H1 3PE sing 73 n n C3H H3H2 3PE sing 74 n n C3I H3I1 3PE sing 75 n n C3I H3I2 3PE sing 76 n n C3I H3I3 3PE sing 77 n n O21 C21 3PE sing 78 n n O22 C21 3PE doub 79 n n C21 C22 3PE sing 80 n n C22 C23 3PE sing 81 n n C22 H221 3PE sing 82 n n C22 H222 3PE sing 83 n n C23 C24 3PE sing 84 n n C23 H231 3PE sing 85 n n C23 H232 3PE sing 86 n n C24 C25 3PE sing 87 n n C24 H241 3PE sing 88 n n C24 H242 3PE sing 89 n n C25 C26 3PE sing 90 n n C25 H251 3PE sing 91 n n C25 H252 3PE sing 92 n n C26 C27 3PE sing 93 n n C26 H261 3PE sing 94 n n C26 H262 3PE sing 95 n n C27 C28 3PE sing 96 n n C27 H271 3PE sing 97 n n C27 H272 3PE sing 98 n n C28 C29 3PE sing 99 n n C28 H281 3PE sing 100 n n C28 H282 3PE sing 101 n n C29 C2A 3PE sing 102 n n C29 H291 3PE sing 103 n n C29 H292 3PE sing 104 n n C2A C2B 3PE sing 105 n n C2A H2A1 3PE sing 106 n n C2A H2A2 3PE sing 107 n n C2B C2C 3PE sing 108 n n C2B H2B1 3PE sing 109 n n C2B H2B2 3PE sing 110 n n C2C C2D 3PE sing 111 n n C2C H2C1 3PE sing 112 n n C2C H2C2 3PE sing 113 n n C2D C2E 3PE sing 114 n n C2D H2D1 3PE sing 115 n n C2D H2D2 3PE sing 116 n n C2E C2F 3PE sing 117 n n C2E H2E1 3PE sing 118 n n C2E H2E2 3PE sing 119 n n C2F C2G 3PE sing 120 n n C2F H2F1 3PE sing 121 n n C2F H2F2 3PE sing 122 n n C2G C2H 3PE sing 123 n n C2G H2G1 3PE sing 124 n n C2G H2G2 3PE sing 125 n n C2H C2I 3PE sing 126 n n C2H H2H1 3PE sing 127 n n C2H H2H2 3PE sing 128 n n C2I H2I1 3PE sing 129 n n C2I H2I2 3PE sing 130 n n C2I H2I3 3PE sing 131 n n O12 H1 3PE sing 132 n n # _atom_sites.entry_id 8IC5 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code V 11 HEM AC 1 401 401 HEM HEM . W 11 HEM AC 1 402 402 HEM HEM . X 12 UQ6 AC 1 403 506 UQ6 UQ6 . Y 13 HEC AD 1 401 395 HEC HEC . Z 14 CDL Aa 1 501 536 CDL CDL . AA 15 3PE Ac 1 401 535 3PE 3PE . BA 11 HEM Ac 1 402 401 HEM HEM . CA 11 HEM Ac 1 403 402 HEM HEM . DA 15 3PE Ac 1 404 403 3PE 3PE . EA 16 U10 Ac 1 405 505 U10 U10 . FA 12 UQ6 Ac 1 406 506 UQ6 UQ6 . GA 13 HEC Ad 1 401 395 HEC HEC . HA 14 CDL Ag 1 101 102 CDL CDL . IA 14 CDL Ag 1 102 103 CDL CDL . JA 15 3PE Ag 1 103 104 3PE 3PE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 3PE . . . DA 15 171.622 192.207 203.263 1 40.64 0 P 3PE 404 Ac 1 HETATM 2 N N 3PE . . . DA 15 171.118 195.552 205.582 1 60.16 0 N 3PE 404 Ac 1 HETATM 3 O O11 3PE . . . DA 15 170.695 192.277 201.954 1 47.32 0 O11 3PE 404 Ac 1 HETATM 4 O O12 3PE . . . DA 15 173.056 192.34 202.836 1 32.57 -1 O12 3PE 404 Ac 1 HETATM 5 O O13 3PE . . . DA 15 171.196 193.529 204.07 1 52.6 0 O13 3PE 404 Ac 1 HETATM 6 O O14 3PE . . . DA 15 171.188 191.018 204.072 1 44.77 0 O14 3PE 404 Ac 1 HETATM 7 C C11 3PE . . . DA 15 169.939 193.536 204.793 1 52.61 0 C11 3PE 404 Ac 1 HETATM 8 C C12 3PE . . . DA 15 169.897 194.729 205.709 1 54.65 0 C12 3PE 404 Ac 1 HETATM 9 C C1 3PE . . . DA 15 171.175 192.984 200.782 1 49.9 0 C1 3PE 404 Ac 1 HETATM 10 C C2 3PE . . . DA 15 170.078 193.001 199.743 1 52.72 0 C2 3PE 404 Ac 1 HETATM 11 C C3 3PE . . . DA 15 170.381 193.874 198.546 1 60.42 0 C3 3PE 404 Ac 1 HETATM 12 O O31 3PE . . . DA 15 169.462 193.532 197.486 1 66.13 0 O31 3PE 404 Ac 1 HETATM 13 O O32 3PE . . . DA 15 168.261 195.382 197.805 1 71.48 0 O32 3PE 404 Ac 1 HETATM 14 C C31 3PE . . . DA 15 168.34 194.242 197.43 1 68.94 0 C31 3PE 404 Ac 1 HETATM 15 C C32 3PE . . . DA 15 167.211 193.446 196.844 1 65.69 0 C32 3PE 404 Ac 1 HETATM 16 C C33 3PE . . . DA 15 167.414 193.093 195.407 1 70.78 0 C33 3PE 404 Ac 1 HETATM 17 C C34 3PE . . . DA 15 166.39 192.091 194.904 1 72.34 0 C34 3PE 404 Ac 1 HETATM 18 O O21 3PE . . . DA 15 169.844 191.641 199.291 1 53.25 0 O21 3PE 404 Ac 1 HETATM 19 O O22 3PE . . . DA 15 167.674 191.679 199.751 1 47.17 0 O22 3PE 404 Ac 1 HETATM 20 C C21 3PE . . . DA 15 168.696 191.057 199.656 1 51.02 0 C21 3PE 404 Ac 1 HETATM 21 C C22 3PE . . . DA 15 168.836 189.593 199.935 1 44.23 0 C22 3PE 404 Ac 1 HETATM 22 C C23 3PE . . . DA 15 168.199 188.729 198.897 1 50.65 0 C23 3PE 404 Ac 1 HETATM 23 C C24 3PE . . . DA 15 167.303 187.667 199.501 1 51.98 0 C24 3PE 404 Ac 1 HETATM 24 C C25 3PE . . . DA 15 166.461 186.943 198.489 1 62.15 0 C25 3PE 404 Ac 1 HETATM 25 C C26 3PE . . . DA 15 166.742 187.341 197.067 1 53.63 0 C26 3PE 404 Ac 1 HETATM 26 C C27 3PE . . . DA 15 165.943 186.573 196.047 1 55.3 0 C27 3PE 404 Ac 1 HETATM 27 C C28 3PE . . . DA 15 166.438 186.73 194.633 1 64.88 0 C28 3PE 404 Ac 1 HETATM 28 C C29 3PE . . . DA 15 165.669 185.922 193.62 1 72.42 0 C29 3PE 404 Ac 1 HETATM 29 C C2A 3PE . . . DA 15 165.796 184.431 193.797 1 69.04 0 C2A 3PE 404 Ac 1 HETATM 30 C C2B 3PE . . . DA 15 165.144 183.625 192.704 1 73.31 0 C2B 3PE 404 Ac 1 HETATM 31 C C2C 3PE . . . DA 15 165.916 182.395 192.298 1 77.88 0 C2C 3PE 404 Ac 1 HETATM 32 C C2D 3PE . . . DA 15 166.683 181.748 193.425 1 77.02 0 C2D 3PE 404 Ac 1 HETATM 33 C C2E 3PE . . . DA 15 166.695 180.242 193.376 1 77.54 0 C2E 3PE 404 Ac 1 HETATM 34 C C2F 3PE . . . DA 15 165.621 179.641 192.502 1 79.57 0 C2F 3PE 404 Ac 1 HETATM 35 C C2G 3PE . . . DA 15 165.821 178.177 192.195 1 76.07 0 C2G 3PE 404 Ac 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 48 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 35 #