data_8IC5
#
_model_server_result.job_id            x8Miudzs6xTda6Nd3G2nQg 
_model_server_result.datetime_utc      '2024-11-27 21:52:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ic5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"FA","auth_seq_id":406}' 
#
_entry.id    8IC5 
#
_exptl.entry_id    8IC5 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              592.891 
_entity.id                          12 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5-(3,7,11,15,19,23-HEXAMETHYL-TETRACOSA-2,6,10,14,18,22-HEXAENYL)-2,3-DIMETHOXY-6-METHYL-BENZENE-1,4-DIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    21-meric 
_pdbx_struct_assembly.oligomeric_count      21 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 12 X N N 
? 12 FA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 338 AA CYS 338 1_555 A SG CYS 360 AA CYS 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
disulf ? disulf2 E SG CYS 222 AE CYS 222 1_555 E SG CYS 238 AE CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
disulf ? disulf3 H SG CYS 51 AH CYS 51 1_555 H SG CYS 65 AH CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf4 L SG CYS 338 Aa CYS 338 1_555 L SG CYS 360 Aa CYS 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf5 P SG CYS 222 Ae CYS 222 1_555 P SG CYS 238 Ae CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
disulf ? disulf6 S SG CYS 35 Ah CYS 35 1_555 S SG CYS 79 Ah CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? 
disulf ? disulf7 S SG CYS 51 Ah CYS 51 1_555 S SG CYS 65 Ah CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
covale ? covale1 D SG CYS 121 AD CYS 121 1_555 Y CAB HEC . AD HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.905 ? 
covale ? covale2 O SG CYS 121 Ad CYS 121 1_555 GA CAB HEC . Ad HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.906 ? 
metalc ? metalc1 C NE2 HIS 83 AC HIS 83 1_555 V FE HEM . AC HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
metalc ? metalc2 C NE2 HIS 97 AC HIS 97 1_555 W FE HEM . AC HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.898 ? 
metalc ? metalc3 C NE2 HIS 182 AC HIS 182 1_555 V FE HEM . AC HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? 
metalc ? metalc4 C NE2 HIS 196 AC HIS 196 1_555 W FE HEM . AC HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? 
metalc ? metalc5 D NE2 HIS 125 AD HIS 125 1_555 Y FE HEC . AD HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? 
metalc ? metalc6 D SD MET 244 AD MET 244 1_555 Y FE HEC . AD HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? 
metalc ? metalc7 N NE2 HIS 83 Ac HIS 83 1_555 BA FE HEM . Ac HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
metalc ? metalc8 N NE2 HIS 97 Ac HIS 97 1_555 CA FE HEM . Ac HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? 
metalc ? metalc9 N NE2 HIS 182 Ac HIS 182 1_555 BA FE HEM . Ac HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
metalc ? metalc10 N NE2 HIS 196 Ac HIS 196 1_555 CA FE HEM . Ac HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
metalc ? metalc11 O NE2 HIS 125 Ad HIS 125 1_555 GA FE HEC . Ad HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? 
metalc ? metalc12 O SD MET 244 Ad MET 244 1_555 GA FE HEC . Ad HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? 
#
_chem_comp.formula           'C39 H60 O4' 
_chem_comp.formula_weight    592.891 
_chem_comp.id                UQ6 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5-(3,7,11,15,19,23-HEXAMETHYL-TETRACOSA-2,6,10,14,18,22-HEXAENYL)-2,3-DIMETHOXY-6-METHYL-BENZENE-1,4-DIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C1M UQ6 sing 1062 n n 
C1 C2 UQ6 doub 1063 n y 
C1 C6 UQ6 sing 1064 n y 
C1M H1M1 UQ6 sing 1065 n n 
C1M H1M2 UQ6 sing 1066 n n 
C1M H1M3 UQ6 sing 1067 n n 
C2 O2 UQ6 sing 1068 n n 
C2 C3 UQ6 sing 1069 n y 
O2 HO2 UQ6 sing 1070 n n 
C3 C4 UQ6 doub 1071 n y 
C3 O3 UQ6 sing 1072 n n 
C4 C5 UQ6 sing 1073 n y 
C4 O4 UQ6 sing 1074 n n 
C5 O5 UQ6 sing 1075 n n 
C5 C6 UQ6 doub 1076 n y 
O5 HO5 UQ6 sing 1077 n n 
C6 C7 UQ6 sing 1078 n n 
O3 C3M UQ6 sing 1079 n n 
C3M H3M1 UQ6 sing 1080 n n 
C3M H3M2 UQ6 sing 1081 n n 
C3M H3M3 UQ6 sing 1082 n n 
O4 C4M UQ6 sing 1083 n n 
C4M H4M1 UQ6 sing 1084 n n 
C4M H4M2 UQ6 sing 1085 n n 
C4M H4M3 UQ6 sing 1086 n n 
C7 C8 UQ6 sing 1087 n n 
C7 H71 UQ6 sing 1088 n n 
C7 H72 UQ6 sing 1089 n n 
C8 C9 UQ6 doub 1090 e n 
C8 H8 UQ6 sing 1091 n n 
C9 C10 UQ6 sing 1092 n n 
C9 C11 UQ6 sing 1093 n n 
C10 H101 UQ6 sing 1094 n n 
C10 H102 UQ6 sing 1095 n n 
C10 H103 UQ6 sing 1096 n n 
C11 C12 UQ6 sing 1097 n n 
C11 H111 UQ6 sing 1098 n n 
C11 H112 UQ6 sing 1099 n n 
C12 C13 UQ6 sing 1100 n n 
C12 H121 UQ6 sing 1101 n n 
C12 H122 UQ6 sing 1102 n n 
C13 C14 UQ6 doub 1103 e n 
C13 H13 UQ6 sing 1104 n n 
C14 C15 UQ6 sing 1105 n n 
C14 C16 UQ6 sing 1106 n n 
C15 H151 UQ6 sing 1107 n n 
C15 H152 UQ6 sing 1108 n n 
C15 H153 UQ6 sing 1109 n n 
C16 C17 UQ6 sing 1110 n n 
C16 H161 UQ6 sing 1111 n n 
C16 H162 UQ6 sing 1112 n n 
C17 C18 UQ6 sing 1113 n n 
C17 H171 UQ6 sing 1114 n n 
C17 H172 UQ6 sing 1115 n n 
C18 C19 UQ6 doub 1116 z n 
C18 H18 UQ6 sing 1117 n n 
C19 C20 UQ6 sing 1118 n n 
C19 C21 UQ6 sing 1119 n n 
C20 H201 UQ6 sing 1120 n n 
C20 H202 UQ6 sing 1121 n n 
C20 H203 UQ6 sing 1122 n n 
C21 C22 UQ6 sing 1123 n n 
C21 H211 UQ6 sing 1124 n n 
C21 H212 UQ6 sing 1125 n n 
C22 C23 UQ6 sing 1126 n n 
C22 H221 UQ6 sing 1127 n n 
C22 H222 UQ6 sing 1128 n n 
C23 C24 UQ6 doub 1129 e n 
C23 H23 UQ6 sing 1130 n n 
C24 C25 UQ6 sing 1131 n n 
C24 C26 UQ6 sing 1132 n n 
C25 H251 UQ6 sing 1133 n n 
C25 H252 UQ6 sing 1134 n n 
C25 H253 UQ6 sing 1135 n n 
C26 C27 UQ6 sing 1136 n n 
C26 H261 UQ6 sing 1137 n n 
C26 H262 UQ6 sing 1138 n n 
C27 C28 UQ6 sing 1139 n n 
C27 H271 UQ6 sing 1140 n n 
C27 H272 UQ6 sing 1141 n n 
C28 C29 UQ6 doub 1142 e n 
C28 H28 UQ6 sing 1143 n n 
C29 C30 UQ6 sing 1144 n n 
C29 C31 UQ6 sing 1145 n n 
C30 H301 UQ6 sing 1146 n n 
C30 H302 UQ6 sing 1147 n n 
C30 H303 UQ6 sing 1148 n n 
C31 C32 UQ6 sing 1149 n n 
C31 H311 UQ6 sing 1150 n n 
C31 H312 UQ6 sing 1151 n n 
C32 C33 UQ6 sing 1152 n n 
C32 H321 UQ6 sing 1153 n n 
C32 H322 UQ6 sing 1154 n n 
C33 C34 UQ6 doub 1155 n n 
C33 H33 UQ6 sing 1156 n n 
C34 C35 UQ6 sing 1157 n n 
C34 C36 UQ6 sing 1158 n n 
C35 H351 UQ6 sing 1159 n n 
C35 H352 UQ6 sing 1160 n n 
C35 H353 UQ6 sing 1161 n n 
C36 H361 UQ6 sing 1162 n n 
C36 H362 UQ6 sing 1163 n n 
C36 H363 UQ6 sing 1164 n n 
#
_atom_sites.entry_id                     8IC5 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
V 11 HEM AC 1 401 401 HEM HEM . 
W 11 HEM AC 1 402 402 HEM HEM . 
X 12 UQ6 AC 1 403 506 UQ6 UQ6 . 
Y 13 HEC AD 1 401 395 HEC HEC . 
Z 14 CDL Aa 1 501 536 CDL CDL . 
AA 15 3PE Ac 1 401 535 3PE 3PE . 
BA 11 HEM Ac 1 402 401 HEM HEM . 
CA 11 HEM Ac 1 403 402 HEM HEM . 
DA 15 3PE Ac 1 404 403 3PE 3PE . 
EA 16 U10 Ac 1 405 505 U10 U10 . 
FA 12 UQ6 Ac 1 406 506 UQ6 UQ6 . 
GA 13 HEC Ad 1 401 395 HEC HEC . 
HA 14 CDL Ag 1 101 102 CDL CDL . 
IA 14 CDL Ag 1 102 103 CDL CDL . 
JA 15 3PE Ag 1 103 104 3PE 3PE . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 UQ6 . . . FA 12 154.186 180.923 212.191 1 81.32 0 C1 UQ6 406 Ac 1 
HETATM 2 C C1M UQ6 . . . FA 12 153.276 179.95 212.89 1 81.77 0 C1M UQ6 406 Ac 1 
HETATM 3 C C2 UQ6 . . . FA 12 155.244 181.639 212.949 1 80.94 0 C2 UQ6 406 Ac 1 
HETATM 4 O O2 UQ6 . . . FA 12 155.393 181.415 214.283 1 80.01 0 O2 UQ6 406 Ac 1 
HETATM 5 C C3 UQ6 . . . FA 12 156.139 182.596 212.248 1 79.48 0 C3 UQ6 406 Ac 1 
HETATM 6 C C4 UQ6 . . . FA 12 155.977 182.833 210.788 1 79.8 0 C4 UQ6 406 Ac 1 
HETATM 7 C C5 UQ6 . . . FA 12 154.914 182.122 210.032 1 80.22 0 C5 UQ6 406 Ac 1 
HETATM 8 O O5 UQ6 . . . FA 12 154.761 182.343 208.697 1 78.81 0 O5 UQ6 406 Ac 1 
HETATM 9 C C6 UQ6 . . . FA 12 154.024 181.164 210.736 1 81.09 0 C6 UQ6 406 Ac 1 
HETATM 10 O O3 UQ6 . . . FA 12 157.115 183.258 212.945 1 79.25 0 O3 UQ6 406 Ac 1 
HETATM 11 C C3M UQ6 . . . FA 12 158.32 182.586 213.303 1 75.99 0 C3M UQ6 406 Ac 1 
HETATM 12 O O4 UQ6 . . . FA 12 156.813 183.749 210.121 1 82.24 0 O4 UQ6 406 Ac 1 
HETATM 13 C C4M UQ6 . . . FA 12 158.181 183.611 209.619 1 83.81 0 C4M UQ6 406 Ac 1 
HETATM 14 C C7 UQ6 . . . FA 12 152.946 180.439 209.973 1 82.47 0 C7 UQ6 406 Ac 1 
HETATM 15 C C8 UQ6 . . . FA 12 151.832 181.422 209.718 1 83.82 0 C8 UQ6 406 Ac 1 
HETATM 16 C C9 UQ6 . . . FA 12 151.12 181.351 208.588 1 84.36 0 C9 UQ6 406 Ac 1 
HETATM 17 C C10 UQ6 . . . FA 12 150.019 182.343 208.358 1 85.9 0 C10 UQ6 406 Ac 1 
HETATM 18 C C11 UQ6 . . . FA 12 151.445 180.263 207.589 1 84.41 0 C11 UQ6 406 Ac 1 
HETATM 19 C C12 UQ6 . . . FA 12 151.194 180.687 206.144 1 85.14 0 C12 UQ6 406 Ac 1 
HETATM 20 C C13 UQ6 . . . FA 12 149.722 180.62 205.81 1 84.83 0 C13 UQ6 406 Ac 1 
HETATM 21 C C14 UQ6 . . . FA 12 149.121 179.463 205.504 1 85.43 0 C14 UQ6 406 Ac 1 
HETATM 22 C C15 UQ6 . . . FA 12 147.657 179.454 205.183 1 85.75 0 C15 UQ6 406 Ac 1 
HETATM 23 C C16 UQ6 . . . FA 12 149.905 178.171 205.479 1 86.14 0 C16 UQ6 406 Ac 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           23 
#