data_8IC5 # _model_server_result.job_id t2BbR22kRka1wGPJ2qx8Kw _model_server_result.datetime_utc '2024-11-05 04:54:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ic5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"FA","auth_seq_id":406}' # _entry.id 8IC5 # _exptl.entry_id 8IC5 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 592.891 _entity.id 12 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-(3,7,11,15,19,23-HEXAMETHYL-TETRACOSA-2,6,10,14,18,22-HEXAENYL)-2,3-DIMETHOXY-6-METHYL-BENZENE-1,4-DIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 21-meric _pdbx_struct_assembly.oligomeric_count 21 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 12 X N N ? 12 FA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 338 AA CYS 338 1_555 A SG CYS 360 AA CYS 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? disulf ? disulf2 E SG CYS 222 AE CYS 222 1_555 E SG CYS 238 AE CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf3 H SG CYS 51 AH CYS 51 1_555 H SG CYS 65 AH CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf4 L SG CYS 338 Aa CYS 338 1_555 L SG CYS 360 Aa CYS 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 P SG CYS 222 Ae CYS 222 1_555 P SG CYS 238 Ae CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf6 S SG CYS 35 Ah CYS 35 1_555 S SG CYS 79 Ah CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? disulf ? disulf7 S SG CYS 51 Ah CYS 51 1_555 S SG CYS 65 Ah CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? covale ? covale1 D SG CYS 121 AD CYS 121 1_555 Y CAB HEC . AD HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.905 ? covale ? covale2 O SG CYS 121 Ad CYS 121 1_555 GA CAB HEC . Ad HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.906 ? metalc ? metalc1 C NE2 HIS 83 AC HIS 83 1_555 V FE HEM . AC HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc2 C NE2 HIS 97 AC HIS 97 1_555 W FE HEM . AC HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.898 ? metalc ? metalc3 C NE2 HIS 182 AC HIS 182 1_555 V FE HEM . AC HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc4 C NE2 HIS 196 AC HIS 196 1_555 W FE HEM . AC HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc5 D NE2 HIS 125 AD HIS 125 1_555 Y FE HEC . AD HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc6 D SD MET 244 AD MET 244 1_555 Y FE HEC . AD HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc7 N NE2 HIS 83 Ac HIS 83 1_555 BA FE HEM . Ac HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc8 N NE2 HIS 97 Ac HIS 97 1_555 CA FE HEM . Ac HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc9 N NE2 HIS 182 Ac HIS 182 1_555 BA FE HEM . Ac HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc10 N NE2 HIS 196 Ac HIS 196 1_555 CA FE HEM . Ac HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc11 O NE2 HIS 125 Ad HIS 125 1_555 GA FE HEC . Ad HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc12 O SD MET 244 Ad MET 244 1_555 GA FE HEC . Ad HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? # _chem_comp.formula 'C39 H60 O4' _chem_comp.formula_weight 592.891 _chem_comp.id UQ6 _chem_comp.mon_nstd_flag . _chem_comp.name 5-(3,7,11,15,19,23-HEXAMETHYL-TETRACOSA-2,6,10,14,18,22-HEXAENYL)-2,3-DIMETHOXY-6-METHYL-BENZENE-1,4-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C1M UQ6 sing 1062 n n C1 C2 UQ6 doub 1063 n y C1 C6 UQ6 sing 1064 n y C1M H1M1 UQ6 sing 1065 n n C1M H1M2 UQ6 sing 1066 n n C1M H1M3 UQ6 sing 1067 n n C2 O2 UQ6 sing 1068 n n C2 C3 UQ6 sing 1069 n y O2 HO2 UQ6 sing 1070 n n C3 C4 UQ6 doub 1071 n y C3 O3 UQ6 sing 1072 n n C4 C5 UQ6 sing 1073 n y C4 O4 UQ6 sing 1074 n n C5 O5 UQ6 sing 1075 n n C5 C6 UQ6 doub 1076 n y O5 HO5 UQ6 sing 1077 n n C6 C7 UQ6 sing 1078 n n O3 C3M UQ6 sing 1079 n n C3M H3M1 UQ6 sing 1080 n n C3M H3M2 UQ6 sing 1081 n n C3M H3M3 UQ6 sing 1082 n n O4 C4M UQ6 sing 1083 n n C4M H4M1 UQ6 sing 1084 n n C4M H4M2 UQ6 sing 1085 n n C4M H4M3 UQ6 sing 1086 n n C7 C8 UQ6 sing 1087 n n C7 H71 UQ6 sing 1088 n n C7 H72 UQ6 sing 1089 n n C8 C9 UQ6 doub 1090 e n C8 H8 UQ6 sing 1091 n n C9 C10 UQ6 sing 1092 n n C9 C11 UQ6 sing 1093 n n C10 H101 UQ6 sing 1094 n n C10 H102 UQ6 sing 1095 n n C10 H103 UQ6 sing 1096 n n C11 C12 UQ6 sing 1097 n n C11 H111 UQ6 sing 1098 n n C11 H112 UQ6 sing 1099 n n C12 C13 UQ6 sing 1100 n n C12 H121 UQ6 sing 1101 n n C12 H122 UQ6 sing 1102 n n C13 C14 UQ6 doub 1103 e n C13 H13 UQ6 sing 1104 n n C14 C15 UQ6 sing 1105 n n C14 C16 UQ6 sing 1106 n n C15 H151 UQ6 sing 1107 n n C15 H152 UQ6 sing 1108 n n C15 H153 UQ6 sing 1109 n n C16 C17 UQ6 sing 1110 n n C16 H161 UQ6 sing 1111 n n C16 H162 UQ6 sing 1112 n n C17 C18 UQ6 sing 1113 n n C17 H171 UQ6 sing 1114 n n C17 H172 UQ6 sing 1115 n n C18 C19 UQ6 doub 1116 z n C18 H18 UQ6 sing 1117 n n C19 C20 UQ6 sing 1118 n n C19 C21 UQ6 sing 1119 n n C20 H201 UQ6 sing 1120 n n C20 H202 UQ6 sing 1121 n n C20 H203 UQ6 sing 1122 n n C21 C22 UQ6 sing 1123 n n C21 H211 UQ6 sing 1124 n n C21 H212 UQ6 sing 1125 n n C22 C23 UQ6 sing 1126 n n C22 H221 UQ6 sing 1127 n n C22 H222 UQ6 sing 1128 n n C23 C24 UQ6 doub 1129 e n C23 H23 UQ6 sing 1130 n n C24 C25 UQ6 sing 1131 n n C24 C26 UQ6 sing 1132 n n C25 H251 UQ6 sing 1133 n n C25 H252 UQ6 sing 1134 n n C25 H253 UQ6 sing 1135 n n C26 C27 UQ6 sing 1136 n n C26 H261 UQ6 sing 1137 n n C26 H262 UQ6 sing 1138 n n C27 C28 UQ6 sing 1139 n n C27 H271 UQ6 sing 1140 n n C27 H272 UQ6 sing 1141 n n C28 C29 UQ6 doub 1142 e n C28 H28 UQ6 sing 1143 n n C29 C30 UQ6 sing 1144 n n C29 C31 UQ6 sing 1145 n n C30 H301 UQ6 sing 1146 n n C30 H302 UQ6 sing 1147 n n C30 H303 UQ6 sing 1148 n n C31 C32 UQ6 sing 1149 n n C31 H311 UQ6 sing 1150 n n C31 H312 UQ6 sing 1151 n n C32 C33 UQ6 sing 1152 n n C32 H321 UQ6 sing 1153 n n C32 H322 UQ6 sing 1154 n n C33 C34 UQ6 doub 1155 n n C33 H33 UQ6 sing 1156 n n C34 C35 UQ6 sing 1157 n n C34 C36 UQ6 sing 1158 n n C35 H351 UQ6 sing 1159 n n C35 H352 UQ6 sing 1160 n n C35 H353 UQ6 sing 1161 n n C36 H361 UQ6 sing 1162 n n C36 H362 UQ6 sing 1163 n n C36 H363 UQ6 sing 1164 n n # _atom_sites.entry_id 8IC5 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code V 11 HEM AC 1 401 401 HEM HEM . W 11 HEM AC 1 402 402 HEM HEM . X 12 UQ6 AC 1 403 506 UQ6 UQ6 . Y 13 HEC AD 1 401 395 HEC HEC . Z 14 CDL Aa 1 501 536 CDL CDL . AA 15 3PE Ac 1 401 535 3PE 3PE . BA 11 HEM Ac 1 402 401 HEM HEM . CA 11 HEM Ac 1 403 402 HEM HEM . DA 15 3PE Ac 1 404 403 3PE 3PE . EA 16 U10 Ac 1 405 505 U10 U10 . FA 12 UQ6 Ac 1 406 506 UQ6 UQ6 . GA 13 HEC Ad 1 401 395 HEC HEC . HA 14 CDL Ag 1 101 102 CDL CDL . IA 14 CDL Ag 1 102 103 CDL CDL . JA 15 3PE Ag 1 103 104 3PE 3PE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 UQ6 . . . FA 12 154.186 180.923 212.191 1 81.32 0 C1 UQ6 406 Ac 1 HETATM 2 C C1M UQ6 . . . FA 12 153.276 179.95 212.89 1 81.77 0 C1M UQ6 406 Ac 1 HETATM 3 C C2 UQ6 . . . FA 12 155.244 181.639 212.949 1 80.94 0 C2 UQ6 406 Ac 1 HETATM 4 O O2 UQ6 . . . FA 12 155.393 181.415 214.283 1 80.01 0 O2 UQ6 406 Ac 1 HETATM 5 C C3 UQ6 . . . FA 12 156.139 182.596 212.248 1 79.48 0 C3 UQ6 406 Ac 1 HETATM 6 C C4 UQ6 . . . FA 12 155.977 182.833 210.788 1 79.8 0 C4 UQ6 406 Ac 1 HETATM 7 C C5 UQ6 . . . FA 12 154.914 182.122 210.032 1 80.22 0 C5 UQ6 406 Ac 1 HETATM 8 O O5 UQ6 . . . FA 12 154.761 182.343 208.697 1 78.81 0 O5 UQ6 406 Ac 1 HETATM 9 C C6 UQ6 . . . FA 12 154.024 181.164 210.736 1 81.09 0 C6 UQ6 406 Ac 1 HETATM 10 O O3 UQ6 . . . FA 12 157.115 183.258 212.945 1 79.25 0 O3 UQ6 406 Ac 1 HETATM 11 C C3M UQ6 . . . FA 12 158.32 182.586 213.303 1 75.99 0 C3M UQ6 406 Ac 1 HETATM 12 O O4 UQ6 . . . FA 12 156.813 183.749 210.121 1 82.24 0 O4 UQ6 406 Ac 1 HETATM 13 C C4M UQ6 . . . FA 12 158.181 183.611 209.619 1 83.81 0 C4M UQ6 406 Ac 1 HETATM 14 C C7 UQ6 . . . FA 12 152.946 180.439 209.973 1 82.47 0 C7 UQ6 406 Ac 1 HETATM 15 C C8 UQ6 . . . FA 12 151.832 181.422 209.718 1 83.82 0 C8 UQ6 406 Ac 1 HETATM 16 C C9 UQ6 . . . FA 12 151.12 181.351 208.588 1 84.36 0 C9 UQ6 406 Ac 1 HETATM 17 C C10 UQ6 . . . FA 12 150.019 182.343 208.358 1 85.9 0 C10 UQ6 406 Ac 1 HETATM 18 C C11 UQ6 . . . FA 12 151.445 180.263 207.589 1 84.41 0 C11 UQ6 406 Ac 1 HETATM 19 C C12 UQ6 . . . FA 12 151.194 180.687 206.144 1 85.14 0 C12 UQ6 406 Ac 1 HETATM 20 C C13 UQ6 . . . FA 12 149.722 180.62 205.81 1 84.83 0 C13 UQ6 406 Ac 1 HETATM 21 C C14 UQ6 . . . FA 12 149.121 179.463 205.504 1 85.43 0 C14 UQ6 406 Ac 1 HETATM 22 C C15 UQ6 . . . FA 12 147.657 179.454 205.183 1 85.75 0 C15 UQ6 406 Ac 1 HETATM 23 C C16 UQ6 . . . FA 12 149.905 178.171 205.479 1 86.14 0 C16 UQ6 406 Ac 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 59 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #