data_8ICA # _model_server_result.job_id 8PzY5M-NtsS7f5JadGqmPQ _model_server_result.datetime_utc '2024-10-26 12:21:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ica # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":338}' # _entry.id 8ICA # _exptl.entry_id 8ICA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 491.182 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2'-DEOXYADENOSINE 5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ICA _cell.length_a 179.839 _cell.length_b 57.719 _cell.length_c 48.175 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ICA _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OP1 DT 6 P DT 6 1_555 E NA NA . A NA 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc2 C O LYS 60 A LYS 60 1_555 F NA NA . A NA 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc3 C O LEU 62 A LEU 62 1_555 F NA NA . A NA 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc4 C O VAL 65 A VAL 65 1_555 F NA NA . A NA 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.924 ? metalc ? metalc5 C O THR 101 A THR 101 1_555 E NA NA . A NA 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc6 C O VAL 103 A VAL 103 1_555 E NA NA . A NA 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc7 C O ILE 106 A ILE 106 1_555 E NA NA . A NA 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.615 ? metalc ? metalc8 C OD1 ASP 190 A ASP 190 1_555 D CA CA . A CA 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.869 ? metalc ? metalc9 G O1G DTP . A DTP 338 1_555 D CA CA . A CA 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.325 ? metalc ? metalc10 G O2B DTP . A DTP 338 1_555 D CA CA . A CA 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.329 ? metalc ? metalc11 D CA CA . A CA 339 1_555 J O HOH . A HOH 655 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.015 ? metalc ? metalc12 E NA NA . A NA 341 1_555 J O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? hydrog WATSON-CRICK hydrog1 A N3 DC 1 T DC 1 1_555 B N1 DG 7 P DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 DC 1 T DC 1 1_555 B O6 DG 7 P DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 DC 1 T DC 1 1_555 B N2 DG 7 P DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 DA 2 T DA 2 1_555 B N3 DT 6 P DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N6 DA 2 T DA 2 1_555 B O4 DT 6 P DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N3 DT 3 T DT 3 1_555 B N1 DA 5 P DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A O4 DT 3 T DT 3 1_555 B N6 DA 5 P DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N3 DT 4 T DT 4 1_555 B N1 DA 4 P DA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O4 DT 4 T DT 4 1_555 B N6 DA 4 P DA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N1 DA 5 T DA 5 1_555 B N3 DT 3 P DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N6 DA 5 T DA 5 1_555 B O4 DT 3 P DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N1 DG 6 T DG 6 1_555 B N3 DC 2 P DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N2 DG 6 T DG 6 1_555 B O2 DC 2 P DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A O6 DG 6 T DG 6 1_555 B N4 DC 2 P DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N1 DA 7 T DA 7 1_555 B N3 DT 1 P DT 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N6 DA 7 T DA 7 1_555 B O4 DT 1 P DT 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C10 H16 N5 O12 P3' _chem_comp.formula_weight 491.182 _chem_comp.id DTP _chem_comp.mon_nstd_flag . _chem_comp.name "2'-DEOXYADENOSINE 5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8ICA _atom_sites.fract_transf_matrix[1][1] 0.005561 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017325 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020758 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CA A 1 339 339 CA CA . E 5 NA A 1 341 341 NA NA . F 5 NA A 1 342 342 NA NA . G 6 DTP A 1 338 338 DTP DTP . H 7 HOH T 1 517 517 HOH HOH . H 7 HOH T 2 526 526 HOH HOH . H 7 HOH T 3 527 527 HOH HOH . H 7 HOH T 4 537 537 HOH HOH . H 7 HOH T 5 545 545 HOH HOH . H 7 HOH T 6 546 546 HOH HOH . H 7 HOH T 7 547 547 HOH HOH . H 7 HOH T 8 564 564 HOH HOH . H 7 HOH T 9 594 594 HOH HOH . H 7 HOH T 10 634 634 HOH HOH . H 7 HOH T 11 651 651 HOH HOH . H 7 HOH T 12 652 652 HOH HOH . H 7 HOH T 13 659 659 HOH HOH . H 7 HOH T 14 660 660 HOH HOH . I 7 HOH P 1 510 510 HOH HOH . I 7 HOH P 2 511 511 HOH HOH . I 7 HOH P 3 524 524 HOH HOH . I 7 HOH P 4 525 525 HOH HOH . I 7 HOH P 5 534 534 HOH HOH . I 7 HOH P 6 566 566 HOH HOH . I 7 HOH P 7 567 567 HOH HOH . I 7 HOH P 8 569 569 HOH HOH . I 7 HOH P 9 570 570 HOH HOH . I 7 HOH P 10 595 595 HOH HOH . I 7 HOH P 11 599 599 HOH HOH . I 7 HOH P 12 613 613 HOH HOH . I 7 HOH P 13 614 614 HOH HOH . I 7 HOH P 14 615 615 HOH HOH . I 7 HOH P 15 635 635 HOH HOH . I 7 HOH P 16 648 648 HOH HOH . I 7 HOH P 17 653 653 HOH HOH . I 7 HOH P 18 658 658 HOH HOH . J 7 HOH A 1 501 501 HOH HOH . J 7 HOH A 2 502 502 HOH HOH . J 7 HOH A 3 503 503 HOH HOH . J 7 HOH A 4 505 505 HOH HOH . J 7 HOH A 5 506 506 HOH HOH . J 7 HOH A 6 507 507 HOH HOH . J 7 HOH A 7 508 508 HOH HOH . J 7 HOH A 8 509 509 HOH HOH . J 7 HOH A 9 512 512 HOH HOH . J 7 HOH A 10 513 513 HOH HOH . J 7 HOH A 11 514 514 HOH HOH . J 7 HOH A 12 515 515 HOH HOH . J 7 HOH A 13 516 516 HOH HOH . J 7 HOH A 14 518 518 HOH HOH . J 7 HOH A 15 519 519 HOH HOH . J 7 HOH A 16 520 520 HOH HOH . J 7 HOH A 17 521 521 HOH HOH . J 7 HOH A 18 523 523 HOH HOH . J 7 HOH A 19 528 528 HOH HOH . J 7 HOH A 20 529 529 HOH HOH . J 7 HOH A 21 530 530 HOH HOH . J 7 HOH A 22 531 531 HOH HOH . J 7 HOH A 23 533 533 HOH HOH . J 7 HOH A 24 535 535 HOH HOH . J 7 HOH A 25 536 536 HOH HOH . J 7 HOH A 26 538 538 HOH HOH . J 7 HOH A 27 539 539 HOH HOH . J 7 HOH A 28 541 541 HOH HOH . J 7 HOH A 29 542 542 HOH HOH . J 7 HOH A 30 543 543 HOH HOH . J 7 HOH A 31 544 544 HOH HOH . J 7 HOH A 32 550 550 HOH HOH . J 7 HOH A 33 551 551 HOH HOH . J 7 HOH A 34 552 552 HOH HOH . J 7 HOH A 35 553 553 HOH HOH . J 7 HOH A 36 555 555 HOH HOH . J 7 HOH A 37 556 556 HOH HOH . J 7 HOH A 38 557 557 HOH HOH . J 7 HOH A 39 558 558 HOH HOH . J 7 HOH A 40 560 560 HOH HOH . J 7 HOH A 41 561 561 HOH HOH . J 7 HOH A 42 562 562 HOH HOH . J 7 HOH A 43 563 563 HOH HOH . J 7 HOH A 44 565 565 HOH HOH . J 7 HOH A 45 568 568 HOH HOH . J 7 HOH A 46 571 571 HOH HOH . J 7 HOH A 47 575 575 HOH HOH . J 7 HOH A 48 576 576 HOH HOH . J 7 HOH A 49 577 577 HOH HOH . J 7 HOH A 50 578 578 HOH HOH . J 7 HOH A 51 579 579 HOH HOH . J 7 HOH A 52 580 580 HOH HOH . J 7 HOH A 53 581 581 HOH HOH . J 7 HOH A 54 582 582 HOH HOH . J 7 HOH A 55 583 583 HOH HOH . J 7 HOH A 56 584 584 HOH HOH . J 7 HOH A 57 585 585 HOH HOH . J 7 HOH A 58 589 589 HOH HOH . J 7 HOH A 59 590 590 HOH HOH . J 7 HOH A 60 591 591 HOH HOH . J 7 HOH A 61 592 592 HOH HOH . J 7 HOH A 62 593 593 HOH HOH . J 7 HOH A 63 596 596 HOH HOH . J 7 HOH A 64 597 597 HOH HOH . J 7 HOH A 65 600 600 HOH HOH . J 7 HOH A 66 601 601 HOH HOH . J 7 HOH A 67 602 602 HOH HOH . J 7 HOH A 68 603 603 HOH HOH . J 7 HOH A 69 604 604 HOH HOH . J 7 HOH A 70 605 605 HOH HOH . J 7 HOH A 71 606 606 HOH HOH . J 7 HOH A 72 607 607 HOH HOH . J 7 HOH A 73 608 608 HOH HOH . J 7 HOH A 74 610 610 HOH HOH . J 7 HOH A 75 611 611 HOH HOH . J 7 HOH A 76 612 612 HOH HOH . J 7 HOH A 77 616 616 HOH HOH . J 7 HOH A 78 617 617 HOH HOH . J 7 HOH A 79 618 618 HOH HOH . J 7 HOH A 80 620 620 HOH HOH . J 7 HOH A 81 621 621 HOH HOH . J 7 HOH A 82 622 622 HOH HOH . J 7 HOH A 83 623 623 HOH HOH . J 7 HOH A 84 624 624 HOH HOH . J 7 HOH A 85 625 625 HOH HOH . J 7 HOH A 86 626 626 HOH HOH . J 7 HOH A 87 627 627 HOH HOH . J 7 HOH A 88 628 628 HOH HOH . J 7 HOH A 89 629 629 HOH HOH . J 7 HOH A 90 631 631 HOH HOH . J 7 HOH A 91 636 636 HOH HOH . J 7 HOH A 92 637 637 HOH HOH . J 7 HOH A 93 638 638 HOH HOH . J 7 HOH A 94 639 639 HOH HOH . J 7 HOH A 95 640 640 HOH HOH . J 7 HOH A 96 641 641 HOH HOH . J 7 HOH A 97 642 642 HOH HOH . J 7 HOH A 98 643 643 HOH HOH . J 7 HOH A 99 644 644 HOH HOH . J 7 HOH A 100 645 645 HOH HOH . J 7 HOH A 101 646 646 HOH HOH . J 7 HOH A 102 647 647 HOH HOH . J 7 HOH A 103 649 649 HOH HOH . J 7 HOH A 104 650 650 HOH HOH . J 7 HOH A 105 655 655 HOH HOH . J 7 HOH A 106 656 656 HOH HOH . J 7 HOH A 107 657 657 HOH HOH . J 7 HOH A 108 661 661 HOH HOH . J 7 HOH A 109 662 662 HOH HOH . J 7 HOH A 110 663 663 HOH HOH . J 7 HOH A 111 664 664 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG DTP . . . G 6 74.624 36.398 53.176 0.5 66.55 ? PG DTP 338 A 1 HETATM 2 O O1G DTP . . . G 6 75.336 35.487 52.255 0.5 62.79 ? O1G DTP 338 A 1 HETATM 3 O O2G DTP . . . G 6 75.418 37.125 54.204 0.5 67.8 ? O2G DTP 338 A 1 HETATM 4 O O3G DTP . . . G 6 73.438 35.603 53.856 0.5 66.47 ? O3G DTP 338 A 1 HETATM 5 P PB DTP . . . G 6 73.759 37.693 50.702 0.5 76.92 ? PB DTP 338 A 1 HETATM 6 O O1B DTP . . . G 6 74.006 39.115 50.382 0.5 76.99 ? O1B DTP 338 A 1 HETATM 7 O O2B DTP . . . G 6 74.64 36.676 50.065 0.5 81.53 ? O2B DTP 338 A 1 HETATM 8 O O3B DTP . . . G 6 73.799 37.474 52.272 0.5 72.49 ? O3B DTP 338 A 1 HETATM 9 O O3A DTP . . . G 6 72.195 37.353 50.396 0.5 74.85 ? O3A DTP 338 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 349 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 9 #