data_8ICO # _model_server_result.job_id qgp9sE-ps_FLPYQ1YOxRhQ _model_server_result.datetime_utc '2024-10-26 08:33:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ico # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":338}' # _entry.id 8ICO # _exptl.entry_id 8ICO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "3'-AZIDO-3'-DEOXYTHYMIDINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ICO _cell.length_a 179.687 _cell.length_b 57.631 _cell.length_c 48.285 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ICO _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OP1 DT 6 P DT 6 1_555 F NA NA . A NA 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? metalc ? metalc2 C O LYS 60 A LYS 60 1_555 G NA NA . A NA 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.838 ? metalc ? metalc3 C O LEU 62 A LEU 62 1_555 G NA NA . A NA 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc4 C O THR 101 A THR 101 1_555 F NA NA . A NA 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc5 C O VAL 103 A VAL 103 1_555 F NA NA . A NA 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc6 C O ILE 106 A ILE 106 1_555 F NA NA . A NA 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc7 C OD1 ASP 190 A ASP 190 1_555 D MN MN . A MN 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc8 C OD2 ASP 190 A ASP 190 1_555 E MN MN . A MN 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? metalc ? metalc9 H O1A AZT . A AZT 338 1_555 D MN MN . A MN 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc10 H O2B AZT . A AZT 338 1_555 D MN MN . A MN 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc11 H O1G AZT . A AZT 338 1_555 D MN MN . A MN 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc12 D MN MN . A MN 339 1_555 K O HOH . A HOH 653 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.75 ? metalc ? metalc13 F NA NA . A NA 341 1_555 K O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? hydrog 'DC-DG PAIR' hydrog1 A O2 DC 1 T DC 1 1_555 B N2 DG 7 P DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N1 DA 2 T DA 2 1_555 B N3 DT 6 P DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A N6 DA 2 T DA 2 1_555 B O4 DT 6 P DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N3 DT 3 T DT 3 1_555 B N1 DA 5 P DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A O4 DT 3 T DT 3 1_555 B N6 DA 5 P DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N3 DT 4 T DT 4 1_555 B N1 DA 4 P DA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A O4 DT 4 T DT 4 1_555 B N6 DA 4 P DA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N1 DA 5 T DA 5 1_555 B N3 DT 3 P DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N6 DA 5 T DA 5 1_555 B O4 DT 3 P DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N1 DG 6 T DG 6 1_555 B N3 DC 2 P DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N2 DG 6 T DG 6 1_555 B O2 DC 2 P DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O6 DG 6 T DG 6 1_555 B N4 DC 2 P DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N1 DA 7 T DA 7 1_555 B N3 DT 1 P DT 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N6 DA 7 T DA 7 1_555 B O4 DT 1 P DT 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id AZT _chem_comp.mon_nstd_flag . _chem_comp.name "3'-AZIDO-3'-DEOXYTHYMIDINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8ICO _atom_sites.fract_transf_matrix[1][1] 0.005565 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017352 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02071 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MN A 1 339 339 MN MN . E 4 MN A 1 340 340 MN MN . F 5 NA A 1 341 341 NA NA . G 5 NA A 1 342 342 NA NA . H 6 AZT A 1 338 338 AZT AZT . I 7 HOH T 1 513 513 HOH HOH . I 7 HOH T 2 517 517 HOH HOH . I 7 HOH T 3 537 537 HOH HOH . I 7 HOH T 4 546 546 HOH HOH . I 7 HOH T 5 547 547 HOH HOH . I 7 HOH T 6 564 564 HOH HOH . I 7 HOH T 7 585 585 HOH HOH . I 7 HOH T 8 594 594 HOH HOH . I 7 HOH T 9 634 634 HOH HOH . I 7 HOH T 10 651 651 HOH HOH . I 7 HOH T 11 652 652 HOH HOH . J 7 HOH P 1 510 510 HOH HOH . J 7 HOH P 2 511 511 HOH HOH . J 7 HOH P 3 524 524 HOH HOH . J 7 HOH P 4 525 525 HOH HOH . J 7 HOH P 5 526 526 HOH HOH . J 7 HOH P 6 534 534 HOH HOH . J 7 HOH P 7 566 566 HOH HOH . J 7 HOH P 8 567 567 HOH HOH . J 7 HOH P 9 568 568 HOH HOH . J 7 HOH P 10 569 569 HOH HOH . J 7 HOH P 11 570 570 HOH HOH . J 7 HOH P 12 571 571 HOH HOH . J 7 HOH P 13 595 595 HOH HOH . J 7 HOH P 14 599 599 HOH HOH . J 7 HOH P 15 613 613 HOH HOH . J 7 HOH P 16 614 614 HOH HOH . J 7 HOH P 17 615 615 HOH HOH . J 7 HOH P 18 635 635 HOH HOH . J 7 HOH P 19 648 648 HOH HOH . K 7 HOH A 1 501 501 HOH HOH . K 7 HOH A 2 502 502 HOH HOH . K 7 HOH A 3 503 503 HOH HOH . K 7 HOH A 4 505 505 HOH HOH . K 7 HOH A 5 506 506 HOH HOH . K 7 HOH A 6 507 507 HOH HOH . K 7 HOH A 7 508 508 HOH HOH . K 7 HOH A 8 509 509 HOH HOH . K 7 HOH A 9 512 512 HOH HOH . K 7 HOH A 10 514 514 HOH HOH . K 7 HOH A 11 515 515 HOH HOH . K 7 HOH A 12 516 516 HOH HOH . K 7 HOH A 13 518 518 HOH HOH . K 7 HOH A 14 519 519 HOH HOH . K 7 HOH A 15 520 520 HOH HOH . K 7 HOH A 16 521 521 HOH HOH . K 7 HOH A 17 523 523 HOH HOH . K 7 HOH A 18 527 527 HOH HOH . K 7 HOH A 19 528 528 HOH HOH . K 7 HOH A 20 529 529 HOH HOH . K 7 HOH A 21 530 530 HOH HOH . K 7 HOH A 22 531 531 HOH HOH . K 7 HOH A 23 533 533 HOH HOH . K 7 HOH A 24 535 535 HOH HOH . K 7 HOH A 25 536 536 HOH HOH . K 7 HOH A 26 538 538 HOH HOH . K 7 HOH A 27 539 539 HOH HOH . K 7 HOH A 28 541 541 HOH HOH . K 7 HOH A 29 542 542 HOH HOH . K 7 HOH A 30 543 543 HOH HOH . K 7 HOH A 31 544 544 HOH HOH . K 7 HOH A 32 545 545 HOH HOH . K 7 HOH A 33 550 550 HOH HOH . K 7 HOH A 34 551 551 HOH HOH . K 7 HOH A 35 552 552 HOH HOH . K 7 HOH A 36 553 553 HOH HOH . K 7 HOH A 37 555 555 HOH HOH . K 7 HOH A 38 556 556 HOH HOH . K 7 HOH A 39 557 557 HOH HOH . K 7 HOH A 40 558 558 HOH HOH . K 7 HOH A 41 560 560 HOH HOH . K 7 HOH A 42 561 561 HOH HOH . K 7 HOH A 43 562 562 HOH HOH . K 7 HOH A 44 563 563 HOH HOH . K 7 HOH A 45 565 565 HOH HOH . K 7 HOH A 46 575 575 HOH HOH . K 7 HOH A 47 576 576 HOH HOH . K 7 HOH A 48 577 577 HOH HOH . K 7 HOH A 49 578 578 HOH HOH . K 7 HOH A 50 579 579 HOH HOH . K 7 HOH A 51 580 580 HOH HOH . K 7 HOH A 52 581 581 HOH HOH . K 7 HOH A 53 582 582 HOH HOH . K 7 HOH A 54 583 583 HOH HOH . K 7 HOH A 55 584 584 HOH HOH . K 7 HOH A 56 589 589 HOH HOH . K 7 HOH A 57 590 590 HOH HOH . K 7 HOH A 58 591 591 HOH HOH . K 7 HOH A 59 592 592 HOH HOH . K 7 HOH A 60 593 593 HOH HOH . K 7 HOH A 61 596 596 HOH HOH . K 7 HOH A 62 597 597 HOH HOH . K 7 HOH A 63 600 600 HOH HOH . K 7 HOH A 64 601 601 HOH HOH . K 7 HOH A 65 602 602 HOH HOH . K 7 HOH A 66 603 603 HOH HOH . K 7 HOH A 67 604 604 HOH HOH . K 7 HOH A 68 606 606 HOH HOH . K 7 HOH A 69 607 607 HOH HOH . K 7 HOH A 70 608 608 HOH HOH . K 7 HOH A 71 610 610 HOH HOH . K 7 HOH A 72 611 611 HOH HOH . K 7 HOH A 73 612 612 HOH HOH . K 7 HOH A 74 616 616 HOH HOH . K 7 HOH A 75 617 617 HOH HOH . K 7 HOH A 76 618 618 HOH HOH . K 7 HOH A 77 620 620 HOH HOH . K 7 HOH A 78 621 621 HOH HOH . K 7 HOH A 79 622 622 HOH HOH . K 7 HOH A 80 623 623 HOH HOH . K 7 HOH A 81 624 624 HOH HOH . K 7 HOH A 82 625 625 HOH HOH . K 7 HOH A 83 626 626 HOH HOH . K 7 HOH A 84 627 627 HOH HOH . K 7 HOH A 85 628 628 HOH HOH . K 7 HOH A 86 629 629 HOH HOH . K 7 HOH A 87 631 631 HOH HOH . K 7 HOH A 88 636 636 HOH HOH . K 7 HOH A 89 637 637 HOH HOH . K 7 HOH A 90 638 638 HOH HOH . K 7 HOH A 91 639 639 HOH HOH . K 7 HOH A 92 640 640 HOH HOH . K 7 HOH A 93 641 641 HOH HOH . K 7 HOH A 94 642 642 HOH HOH . K 7 HOH A 95 643 643 HOH HOH . K 7 HOH A 96 644 644 HOH HOH . K 7 HOH A 97 645 645 HOH HOH . K 7 HOH A 98 646 646 HOH HOH . K 7 HOH A 99 647 647 HOH HOH . K 7 HOH A 100 649 649 HOH HOH . K 7 HOH A 101 650 650 HOH HOH . K 7 HOH A 102 653 653 HOH HOH . K 7 HOH A 103 654 654 HOH HOH . K 7 HOH A 104 656 656 HOH HOH . K 7 HOH A 105 657 657 HOH HOH . K 7 HOH A 106 658 658 HOH HOH . K 7 HOH A 107 659 659 HOH HOH . K 7 HOH A 108 660 660 HOH HOH . K 7 HOH A 109 661 661 HOH HOH . K 7 HOH A 110 662 662 HOH HOH . K 7 HOH A 111 663 663 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA AZT . . . H 6 70.958 36.167 50.856 1 83.35 ? PA AZT 338 A 1 HETATM 2 O O1A AZT . . . H 6 71.518 34.801 50.998 1 80.53 ? O1A AZT 338 A 1 HETATM 3 O O2A AZT . . . H 6 69.643 36.464 51.463 1 86.17 ? O2A AZT 338 A 1 HETATM 4 O O3A AZT . . . H 6 72.043 37.234 51.329 1 90.61 ? O3A AZT 338 A 1 HETATM 5 P PB AZT . . . H 6 73.603 37.554 50.96 1 96.6 ? PB AZT 338 A 1 HETATM 6 O O1B AZT . . . H 6 73.66 38.893 50.347 1 100 ? O1B AZT 338 A 1 HETATM 7 O O2B AZT . . . H 6 74.303 36.421 50.282 1 98.28 ? O2B AZT 338 A 1 HETATM 8 O O3B AZT . . . H 6 74.183 37.675 52.419 1 96.05 ? O3B AZT 338 A 1 HETATM 9 P PG AZT . . . H 6 74.44 36.572 53.564 1 89.2 ? PG AZT 338 A 1 HETATM 10 O O1G AZT . . . H 6 73.979 35.261 53.04 1 84.83 ? O1G AZT 338 A 1 HETATM 11 O O2G AZT . . . H 6 75.86 36.712 54.016 1 92.34 ? O2G AZT 338 A 1 HETATM 12 O O3G AZT . . . H 6 73.399 37.142 54.631 1 81.52 ? O3G AZT 338 A 1 HETATM 13 O O5' AZT . . . H 6 70.886 36.513 49.313 1 77.86 ? O5' AZT 338 A 1 HETATM 14 C C5' AZT . . . H 6 71.138 35.468 48.413 1 72.2 ? C5' AZT 338 A 1 HETATM 15 C C4' AZT . . . H 6 71.009 35.972 47.002 1 70.83 ? C4' AZT 338 A 1 HETATM 16 O O4' AZT . . . H 6 69.736 35.547 46.471 1 70.73 ? O4' AZT 338 A 1 HETATM 17 C C3' AZT . . . H 6 71.071 37.5 46.889 1 68.35 ? C3' AZT 338 A 1 HETATM 18 N N3' AZT . . . H 6 71.951 38.072 45.986 1 64.52 ? N3' AZT 338 A 1 HETATM 19 N N4' AZT . . . H 6 72.712 38.719 45.169 1 67.9 ? N4' AZT 338 A 1 HETATM 20 C C2' AZT . . . H 6 69.631 37.898 46.534 1 69.22 ? C2' AZT 338 A 1 HETATM 21 C C1' AZT . . . H 6 69.083 36.653 45.873 1 68.17 ? C1' AZT 338 A 1 HETATM 22 N N1 AZT . . . H 6 67.594 36.477 46.081 1 66.14 ? N1 AZT 338 A 1 HETATM 23 C C2 AZT . . . H 6 66.516 36.471 45.174 1 69.05 ? C2 AZT 338 A 1 HETATM 24 O O2 AZT . . . H 6 66.711 36.047 43.986 1 67.2 ? O2 AZT 338 A 1 HETATM 25 N N3 AZT . . . H 6 65.28 36.885 45.625 1 70.4 ? N3 AZT 338 A 1 HETATM 26 C C4 AZT . . . H 6 65.108 37.319 46.905 1 64.88 ? C4 AZT 338 A 1 HETATM 27 O O4 AZT . . . H 6 63.884 37.725 47.331 1 62.29 ? O4 AZT 338 A 1 HETATM 28 C C5 AZT . . . H 6 66.186 37.35 47.818 1 62.76 ? C5 AZT 338 A 1 HETATM 29 C C5A AZT . . . H 6 65.857 37.678 49.262 1 59.46 ? C5A AZT 338 A 1 HETATM 30 C C6 AZT . . . H 6 67.433 36.935 47.392 1 63.35 ? C6 AZT 338 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 30 #