data_8ID7 # _model_server_result.job_id WAiosYQkac6ra11-q1_eWg _model_server_result.datetime_utc '2024-12-02 07:28:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8id7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":901}' # _entry.id 8ID7 # _exptl.entry_id 8ID7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 244.136 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,5-anhydro-6-O-phosphono-D-glucitol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ID7 _cell.length_a 116.48 _cell.length_b 207.17 _cell.length_c 208.05 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ID7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 22 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_454 -x-1/2,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 -58.24 0 -104.025 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H13 O8 P' _chem_comp.formula_weight 244.136 _chem_comp.id 0WK _chem_comp.mon_nstd_flag . _chem_comp.name 1,5-anhydro-6-O-phosphono-D-glucitol _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 C3 0WK sing 1 n n O4 C4 0WK sing 2 n n C4 C3 0WK sing 3 n n C4 C5 0WK sing 4 n n C3 C2 0WK sing 5 n n C6 C5 0WK sing 6 n n C6 O6 0WK sing 7 n n C5 O5 0WK sing 8 n n C2 O2 0WK sing 9 n n C2 C1 0WK sing 10 n n O5 C1 0WK sing 11 n n O6 P 0WK sing 12 n n O1P P 0WK doub 13 n n P O2P 0WK sing 14 n n P O3P 0WK sing 15 n n C1 H1 0WK sing 16 n n C1 H2A 0WK sing 17 n n C2 H2 0WK sing 18 n n C3 H3 0WK sing 19 n n C4 H4 0WK sing 20 n n C5 H5 0WK sing 21 n n C6 H61 0WK sing 22 n n C6 H62 0WK sing 23 n n O2 HO2 0WK sing 24 n n O3 HO3 0WK sing 25 n n O4 HO4 0WK sing 26 n n O2P H12 0WK sing 27 n n O3P H13 0WK sing 28 n n # _pdbx_chem_comp_identifier.comp_id 0WK _pdbx_chem_comp_identifier.identifier D-1-deoxy-Glcp6PO3 _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 8ID7 _atom_sites.fract_transf_matrix[1][1] 0.008585 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004827 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004807 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 0WK A 1 901 901 0WK LIG . C 3 HOH A 1 1001 76 HOH HOH . C 3 HOH A 2 1002 85 HOH HOH . C 3 HOH A 3 1003 100 HOH HOH . C 3 HOH A 4 1004 136 HOH HOH . C 3 HOH A 5 1005 126 HOH HOH . C 3 HOH A 6 1006 16 HOH HOH . C 3 HOH A 7 1007 98 HOH HOH . C 3 HOH A 8 1008 138 HOH HOH . C 3 HOH A 9 1009 163 HOH HOH . C 3 HOH A 10 1010 3 HOH HOH . C 3 HOH A 11 1011 57 HOH HOH . C 3 HOH A 12 1012 143 HOH HOH . C 3 HOH A 13 1013 134 HOH HOH . C 3 HOH A 14 1014 27 HOH HOH . C 3 HOH A 15 1015 105 HOH HOH . C 3 HOH A 16 1016 78 HOH HOH . C 3 HOH A 17 1017 111 HOH HOH . C 3 HOH A 18 1018 92 HOH HOH . C 3 HOH A 19 1019 48 HOH HOH . C 3 HOH A 20 1020 145 HOH HOH . C 3 HOH A 21 1021 25 HOH HOH . C 3 HOH A 22 1022 112 HOH HOH . C 3 HOH A 23 1023 148 HOH HOH . C 3 HOH A 24 1024 130 HOH HOH . C 3 HOH A 25 1025 124 HOH HOH . C 3 HOH A 26 1026 96 HOH HOH . C 3 HOH A 27 1027 42 HOH HOH . C 3 HOH A 28 1028 146 HOH HOH . C 3 HOH A 29 1029 1 HOH HOH . C 3 HOH A 30 1030 33 HOH HOH . C 3 HOH A 31 1031 153 HOH HOH . C 3 HOH A 32 1032 72 HOH HOH . C 3 HOH A 33 1033 13 HOH HOH . C 3 HOH A 34 1034 35 HOH HOH . C 3 HOH A 35 1035 14 HOH HOH . C 3 HOH A 36 1036 20 HOH HOH . C 3 HOH A 37 1037 102 HOH HOH . C 3 HOH A 38 1038 7 HOH HOH . C 3 HOH A 39 1039 63 HOH HOH . C 3 HOH A 40 1040 51 HOH HOH . C 3 HOH A 41 1041 18 HOH HOH . C 3 HOH A 42 1042 149 HOH HOH . C 3 HOH A 43 1043 82 HOH HOH . C 3 HOH A 44 1044 90 HOH HOH . C 3 HOH A 45 1045 101 HOH HOH . C 3 HOH A 46 1046 71 HOH HOH . C 3 HOH A 47 1047 161 HOH HOH . C 3 HOH A 48 1048 37 HOH HOH . C 3 HOH A 49 1049 119 HOH HOH . C 3 HOH A 50 1050 44 HOH HOH . C 3 HOH A 51 1051 83 HOH HOH . C 3 HOH A 52 1052 43 HOH HOH . C 3 HOH A 53 1053 104 HOH HOH . C 3 HOH A 54 1054 139 HOH HOH . C 3 HOH A 55 1055 65 HOH HOH . C 3 HOH A 56 1056 50 HOH HOH . C 3 HOH A 57 1057 77 HOH HOH . C 3 HOH A 58 1058 21 HOH HOH . C 3 HOH A 59 1059 4 HOH HOH . C 3 HOH A 60 1060 91 HOH HOH . C 3 HOH A 61 1061 86 HOH HOH . C 3 HOH A 62 1062 73 HOH HOH . C 3 HOH A 63 1063 17 HOH HOH . C 3 HOH A 64 1064 34 HOH HOH . C 3 HOH A 65 1065 5 HOH HOH . C 3 HOH A 66 1066 32 HOH HOH . C 3 HOH A 67 1067 75 HOH HOH . C 3 HOH A 68 1068 60 HOH HOH . C 3 HOH A 69 1069 114 HOH HOH . C 3 HOH A 70 1070 41 HOH HOH . C 3 HOH A 71 1071 107 HOH HOH . C 3 HOH A 72 1072 123 HOH HOH . C 3 HOH A 73 1073 52 HOH HOH . C 3 HOH A 74 1074 6 HOH HOH . C 3 HOH A 75 1075 116 HOH HOH . C 3 HOH A 76 1076 2 HOH HOH . C 3 HOH A 77 1077 47 HOH HOH . C 3 HOH A 78 1078 131 HOH HOH . C 3 HOH A 79 1079 55 HOH HOH . C 3 HOH A 80 1080 74 HOH HOH . C 3 HOH A 81 1081 108 HOH HOH . C 3 HOH A 82 1082 12 HOH HOH . C 3 HOH A 83 1083 15 HOH HOH . C 3 HOH A 84 1084 103 HOH HOH . C 3 HOH A 85 1085 11 HOH HOH . C 3 HOH A 86 1086 68 HOH HOH . C 3 HOH A 87 1087 40 HOH HOH . C 3 HOH A 88 1088 64 HOH HOH . C 3 HOH A 89 1089 10 HOH HOH . C 3 HOH A 90 1090 118 HOH HOH . C 3 HOH A 91 1091 80 HOH HOH . C 3 HOH A 92 1092 115 HOH HOH . C 3 HOH A 93 1093 19 HOH HOH . C 3 HOH A 94 1094 53 HOH HOH . C 3 HOH A 95 1095 150 HOH HOH . C 3 HOH A 96 1096 66 HOH HOH . C 3 HOH A 97 1097 59 HOH HOH . C 3 HOH A 98 1098 117 HOH HOH . C 3 HOH A 99 1099 93 HOH HOH . C 3 HOH A 100 1100 38 HOH HOH . C 3 HOH A 101 1101 9 HOH HOH . C 3 HOH A 102 1102 125 HOH HOH . C 3 HOH A 103 1103 160 HOH HOH . C 3 HOH A 104 1104 121 HOH HOH . C 3 HOH A 105 1105 152 HOH HOH . C 3 HOH A 106 1106 58 HOH HOH . C 3 HOH A 107 1107 39 HOH HOH . C 3 HOH A 108 1108 28 HOH HOH . C 3 HOH A 109 1109 137 HOH HOH . C 3 HOH A 110 1110 156 HOH HOH . C 3 HOH A 111 1111 99 HOH HOH . C 3 HOH A 112 1112 30 HOH HOH . C 3 HOH A 113 1113 69 HOH HOH . C 3 HOH A 114 1114 56 HOH HOH . C 3 HOH A 115 1115 84 HOH HOH . C 3 HOH A 116 1116 94 HOH HOH . C 3 HOH A 117 1117 79 HOH HOH . C 3 HOH A 118 1118 45 HOH HOH . C 3 HOH A 119 1119 95 HOH HOH . C 3 HOH A 120 1120 147 HOH HOH . C 3 HOH A 121 1121 70 HOH HOH . C 3 HOH A 122 1122 141 HOH HOH . C 3 HOH A 123 1123 23 HOH HOH . C 3 HOH A 124 1124 67 HOH HOH . C 3 HOH A 125 1125 106 HOH HOH . C 3 HOH A 126 1126 133 HOH HOH . C 3 HOH A 127 1127 135 HOH HOH . C 3 HOH A 128 1128 36 HOH HOH . C 3 HOH A 129 1129 31 HOH HOH . C 3 HOH A 130 1130 49 HOH HOH . C 3 HOH A 131 1131 62 HOH HOH . C 3 HOH A 132 1132 8 HOH HOH . C 3 HOH A 133 1133 24 HOH HOH . C 3 HOH A 134 1134 88 HOH HOH . C 3 HOH A 135 1135 142 HOH HOH . C 3 HOH A 136 1136 162 HOH HOH . C 3 HOH A 137 1137 140 HOH HOH . C 3 HOH A 138 1138 81 HOH HOH . C 3 HOH A 139 1139 46 HOH HOH . C 3 HOH A 140 1140 22 HOH HOH . C 3 HOH A 141 1141 164 HOH HOH . C 3 HOH A 142 1142 97 HOH HOH . C 3 HOH A 143 1143 87 HOH HOH . C 3 HOH A 144 1144 128 HOH HOH . C 3 HOH A 145 1145 154 HOH HOH . C 3 HOH A 146 1146 29 HOH HOH . C 3 HOH A 147 1147 110 HOH HOH . C 3 HOH A 148 1148 26 HOH HOH . C 3 HOH A 149 1149 61 HOH HOH . C 3 HOH A 150 1150 120 HOH HOH . C 3 HOH A 151 1151 89 HOH HOH . C 3 HOH A 152 1152 159 HOH HOH . C 3 HOH A 153 1153 144 HOH HOH . C 3 HOH A 154 1154 109 HOH HOH . C 3 HOH A 155 1155 54 HOH HOH . C 3 HOH A 156 1156 113 HOH HOH . C 3 HOH A 157 1157 151 HOH HOH . C 3 HOH A 158 1158 155 HOH HOH . C 3 HOH A 159 1159 132 HOH HOH . C 3 HOH A 160 1160 122 HOH HOH . C 3 HOH A 161 1161 157 HOH HOH . C 3 HOH A 162 1162 165 HOH HOH . C 3 HOH A 163 1163 129 HOH HOH . C 3 HOH A 164 1164 127 HOH HOH . C 3 HOH A 165 1165 158 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 0WK . . . B 2 -28.502 -20.035 -23.837 1 51.08 ? C1 0WK 901 A 1 HETATM 2 C C2 0WK . . . B 2 -28.197 -19.246 -22.572 1 45.73 ? C2 0WK 901 A 1 HETATM 3 C C3 0WK . . . B 2 -26.778 -18.7 -22.521 1 51.02 ? C3 0WK 901 A 1 HETATM 4 C C4 0WK . . . B 2 -25.835 -19.818 -22.926 1 52.98 ? C4 0WK 901 A 1 HETATM 5 C C5 0WK . . . B 2 -26.395 -20.534 -24.158 1 53.73 ? C5 0WK 901 A 1 HETATM 6 C C6 0WK . . . B 2 -25.399 -21.611 -24.589 1 57.89 ? C6 0WK 901 A 1 HETATM 7 O O2 0WK . . . B 2 -29.1 -18.18 -22.503 1 47.98 ? O2 0WK 901 A 1 HETATM 8 O O3 0WK . . . B 2 -26.542 -18.317 -21.187 1 61.9 ? O3 0WK 901 A 1 HETATM 9 O O4 0WK . . . B 2 -24.565 -19.307 -23.241 1 52.97 ? O4 0WK 901 A 1 HETATM 10 O O5 0WK . . . B 2 -27.638 -21.12 -23.924 1 47.34 ? O5 0WK 901 A 1 HETATM 11 O O6 0WK . . . B 2 -25.146 -21.454 -25.96 1 67.28 ? O6 0WK 901 A 1 HETATM 12 P P 0WK . . . B 2 -25.091 -22.759 -26.968 1 82.36 ? P 0WK 901 A 1 HETATM 13 O O1P 0WK . . . B 2 -26.122 -22.593 -28.072 1 57.21 ? O1P 0WK 901 A 1 HETATM 14 O O2P 0WK . . . B 2 -25.408 -24.009 -26.169 1 61.86 -1 O2P 0WK 901 A 1 HETATM 15 O O3P 0WK . . . B 2 -23.683 -22.822 -27.54 1 67.64 -1 O3P 0WK 901 A 1 HETATM 16 H H1 0WK . . . B 2 -28.381 -19.463 -24.611 1 61.09 ? H1 0WK 901 A 1 HETATM 17 H H2A 0WK . . . B 2 -29.418 -20.353 -23.806 1 61.09 ? H2A 0WK 901 A 1 HETATM 18 H H2 0WK . . . B 2 -28.285 -19.852 -21.82 1 54.67 ? H2 0WK 901 A 1 HETATM 19 H H3 0WK . . . B 2 -26.646 -17.945 -23.115 1 61.01 ? H3 0WK 901 A 1 HETATM 20 H H4 0WK . . . B 2 -25.753 -20.435 -22.182 1 63.37 ? H4 0WK 901 A 1 HETATM 21 H H5 0WK . . . B 2 -26.523 -19.872 -24.855 1 64.27 ? H5 0WK 901 A 1 HETATM 22 H H61 0WK . . . B 2 -24.573 -21.512 -24.089 1 69.27 ? H61 0WK 901 A 1 HETATM 23 H H62 0WK . . . B 2 -25.774 -22.49 -24.423 1 69.27 ? H62 0WK 901 A 1 HETATM 24 H HO2 0WK . . . B 2 -29.379 -17.993 -23.284 1 57.37 ? HO2 0WK 901 A 1 HETATM 25 H HO3 0WK . . . B 2 -27.177 -17.821 -20.918 1 74.07 ? HO3 0WK 901 A 1 HETATM 26 H HO4 0WK . . . B 2 -24.524 -19.143 -24.074 1 63.36 ? HO4 0WK 901 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 26 #