data_8IDX
#
_model_server_result.job_id            c4Lw0y3pvne7sxUwORC3qA 
_model_server_result.datetime_utc      '2025-02-28 13:11:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8idx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":504}' 
#
_entry.id    8IDX 
#
_exptl.entry_id    8IDX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    25 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         103.15 
_cell.angle_beta          105.17 
_cell.angle_gamma         108.29 
_cell.entry_id            8IDX 
_cell.length_a            48.638 
_cell.length_b            51.121 
_cell.length_c            56.578 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8IDX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,IA 1 1 
B,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,JA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
? 3 N N N 
? 3 O N N 
? 3 P N N 
? 3 Q N N 
? 3 R N N 
? 3 S N N 
? 3 T N N 
? 3 Y N N 
? 3 Z N N 
? 3 AA N N 
? 3 BA N N 
? 3 CA N N 
? 3 DA N N 
? 3 EA N N 
? 3 FA N N 
? 3 GA N N 
? 3 HA N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     8IDX 
_atom_sites.fract_transf_matrix[1][1]    0.02056 
_atom_sites.fract_transf_matrix[1][2]    0.006797 
_atom_sites.fract_transf_matrix[1][3]    0.008362 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020603 
_atom_sites.fract_transf_matrix[2][3]    0.007396 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019457 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PEG A 1 501 580 PEG PEG . 
D 2 PEG A 1 502 780 PEG PEG . 
E 2 PEG A 1 503 880 PEG PEG . 
F 3 EDO A 1 504 3024 EDO EDO . 
G 3 EDO A 1 505 3028 EDO EDO . 
H 3 EDO A 1 506 3039 EDO EDO . 
I 3 EDO A 1 507 3041 EDO EDO . 
J 3 EDO A 1 508 3042 EDO EDO . 
K 3 EDO A 1 509 3043 EDO EDO . 
L 3 EDO A 1 510 3045 EDO EDO . 
M 3 EDO A 1 511 3046 EDO EDO . 
N 3 EDO A 1 512 3047 EDO EDO . 
O 3 EDO A 1 513 2421 EDO EDO . 
P 3 EDO A 1 514 2423 EDO EDO . 
Q 3 EDO A 1 515 2424 EDO EDO . 
R 3 EDO A 1 516 2425 EDO EDO . 
S 3 EDO A 1 517 2426 EDO EDO . 
T 3 EDO A 1 518 2427 EDO EDO . 
U 4 PGE B 1 501 680 PGE PGE . 
V 2 PEG B 1 502 480 PEG PEG . 
W 2 PEG B 1 503 580 PEG PEG . 
X 4 PGE B 1 504 880 PGE PGE . 
Y 3 EDO B 1 505 3025 EDO EDO . 
Z 3 EDO B 1 506 3026 EDO EDO . 
AA 3 EDO B 1 507 3027 EDO EDO . 
BA 3 EDO B 1 508 3031 EDO EDO . 
CA 3 EDO B 1 509 3032 EDO EDO . 
DA 3 EDO B 1 510 3034 EDO EDO . 
EA 3 EDO B 1 511 3037 EDO EDO . 
FA 3 EDO B 1 512 3040 EDO EDO . 
GA 3 EDO B 1 513 2422 EDO EDO . 
HA 3 EDO B 1 514 2428 EDO EDO . 
IA 5 HOH A 1 601 35 HOH HOH . 
IA 5 HOH A 2 602 204 HOH HOH . 
IA 5 HOH A 3 603 12 HOH HOH . 
IA 5 HOH A 4 604 17 HOH HOH . 
IA 5 HOH A 5 605 167 HOH HOH . 
IA 5 HOH A 6 606 232 HOH HOH . 
IA 5 HOH A 7 607 237 HOH HOH . 
IA 5 HOH A 8 608 271 HOH HOH . 
IA 5 HOH A 9 609 275 HOH HOH . 
IA 5 HOH A 10 610 147 HOH HOH . 
IA 5 HOH A 11 611 134 HOH HOH . 
IA 5 HOH A 12 612 26 HOH HOH . 
IA 5 HOH A 13 613 32 HOH HOH . 
IA 5 HOH A 14 614 45 HOH HOH . 
IA 5 HOH A 15 615 37 HOH HOH . 
IA 5 HOH A 16 616 27 HOH HOH . 
IA 5 HOH A 17 617 67 HOH HOH . 
IA 5 HOH A 18 618 125 HOH HOH . 
IA 5 HOH A 19 619 184 HOH HOH . 
IA 5 HOH A 20 620 76 HOH HOH . 
IA 5 HOH A 21 621 231 HOH HOH . 
IA 5 HOH A 22 622 61 HOH HOH . 
IA 5 HOH A 23 623 75 HOH HOH . 
IA 5 HOH A 24 624 153 HOH HOH . 
IA 5 HOH A 25 625 49 HOH HOH . 
IA 5 HOH A 26 626 133 HOH HOH . 
IA 5 HOH A 27 627 39 HOH HOH . 
IA 5 HOH A 28 628 124 HOH HOH . 
IA 5 HOH A 29 629 236 HOH HOH . 
IA 5 HOH A 30 630 240 HOH HOH . 
IA 5 HOH A 31 631 43 HOH HOH . 
IA 5 HOH A 32 632 22 HOH HOH . 
IA 5 HOH A 33 633 183 HOH HOH . 
IA 5 HOH A 34 634 148 HOH HOH . 
IA 5 HOH A 35 635 15 HOH HOH . 
IA 5 HOH A 36 636 42 HOH HOH . 
IA 5 HOH A 37 637 79 HOH HOH . 
IA 5 HOH A 38 638 18 HOH HOH . 
IA 5 HOH A 39 639 53 HOH HOH . 
IA 5 HOH A 40 640 95 HOH HOH . 
IA 5 HOH A 41 641 83 HOH HOH . 
IA 5 HOH A 42 642 208 HOH HOH . 
IA 5 HOH A 43 643 24 HOH HOH . 
IA 5 HOH A 44 644 1 HOH HOH . 
IA 5 HOH A 45 645 47 HOH HOH . 
IA 5 HOH A 46 646 143 HOH HOH . 
IA 5 HOH A 47 647 106 HOH HOH . 
IA 5 HOH A 48 648 108 HOH HOH . 
IA 5 HOH A 49 649 159 HOH HOH . 
IA 5 HOH A 50 650 44 HOH HOH . 
IA 5 HOH A 51 651 13 HOH HOH . 
IA 5 HOH A 52 652 249 HOH HOH . 
IA 5 HOH A 53 653 189 HOH HOH . 
IA 5 HOH A 54 654 65 HOH HOH . 
IA 5 HOH A 55 655 145 HOH HOH . 
IA 5 HOH A 56 656 129 HOH HOH . 
IA 5 HOH A 57 657 142 HOH HOH . 
IA 5 HOH A 58 658 90 HOH HOH . 
IA 5 HOH A 59 659 163 HOH HOH . 
IA 5 HOH A 60 660 220 HOH HOH . 
IA 5 HOH A 61 661 38 HOH HOH . 
IA 5 HOH A 62 662 36 HOH HOH . 
IA 5 HOH A 63 663 78 HOH HOH . 
IA 5 HOH A 64 664 33 HOH HOH . 
IA 5 HOH A 65 665 155 HOH HOH . 
IA 5 HOH A 66 666 89 HOH HOH . 
IA 5 HOH A 67 667 118 HOH HOH . 
IA 5 HOH A 68 668 81 HOH HOH . 
IA 5 HOH A 69 669 260 HOH HOH . 
IA 5 HOH A 70 670 182 HOH HOH . 
IA 5 HOH A 71 671 181 HOH HOH . 
IA 5 HOH A 72 672 10 HOH HOH . 
IA 5 HOH A 73 673 135 HOH HOH . 
IA 5 HOH A 74 674 19 HOH HOH . 
IA 5 HOH A 75 675 228 HOH HOH . 
IA 5 HOH A 76 676 207 HOH HOH . 
IA 5 HOH A 77 677 30 HOH HOH . 
IA 5 HOH A 78 678 73 HOH HOH . 
IA 5 HOH A 79 679 88 HOH HOH . 
IA 5 HOH A 80 680 226 HOH HOH . 
IA 5 HOH A 81 681 212 HOH HOH . 
IA 5 HOH A 82 682 225 HOH HOH . 
IA 5 HOH A 83 683 60 HOH HOH . 
IA 5 HOH A 84 684 235 HOH HOH . 
IA 5 HOH A 85 685 123 HOH HOH . 
IA 5 HOH A 86 686 21 HOH HOH . 
IA 5 HOH A 87 687 194 HOH HOH . 
IA 5 HOH A 88 688 187 HOH HOH . 
IA 5 HOH A 89 689 252 HOH HOH . 
IA 5 HOH A 90 690 180 HOH HOH . 
IA 5 HOH A 91 691 268 HOH HOH . 
IA 5 HOH A 92 692 261 HOH HOH . 
IA 5 HOH A 93 693 234 HOH HOH . 
IA 5 HOH A 94 694 244 HOH HOH . 
IA 5 HOH A 95 695 213 HOH HOH . 
IA 5 HOH A 96 696 209 HOH HOH . 
IA 5 HOH A 97 697 242 HOH HOH . 
IA 5 HOH A 98 698 267 HOH HOH . 
IA 5 HOH A 99 699 69 HOH HOH . 
IA 5 HOH A 100 700 219 HOH HOH . 
IA 5 HOH A 101 701 151 HOH HOH . 
IA 5 HOH A 102 702 82 HOH HOH . 
IA 5 HOH A 103 703 128 HOH HOH . 
IA 5 HOH A 104 704 136 HOH HOH . 
IA 5 HOH A 105 705 274 HOH HOH . 
IA 5 HOH A 106 706 97 HOH HOH . 
IA 5 HOH A 107 707 140 HOH HOH . 
IA 5 HOH A 108 708 168 HOH HOH . 
JA 5 HOH B 1 601 211 HOH HOH . 
JA 5 HOH B 2 602 224 HOH HOH . 
JA 5 HOH B 3 603 190 HOH HOH . 
JA 5 HOH B 4 604 141 HOH HOH . 
JA 5 HOH B 5 605 55 HOH HOH . 
JA 5 HOH B 6 606 31 HOH HOH . 
JA 5 HOH B 7 607 162 HOH HOH . 
JA 5 HOH B 8 608 138 HOH HOH . 
JA 5 HOH B 9 609 5 HOH HOH . 
JA 5 HOH B 10 610 272 HOH HOH . 
JA 5 HOH B 11 611 93 HOH HOH . 
JA 5 HOH B 12 612 66 HOH HOH . 
JA 5 HOH B 13 613 25 HOH HOH . 
JA 5 HOH B 14 614 110 HOH HOH . 
JA 5 HOH B 15 615 6 HOH HOH . 
JA 5 HOH B 16 616 34 HOH HOH . 
JA 5 HOH B 17 617 77 HOH HOH . 
JA 5 HOH B 18 618 85 HOH HOH . 
JA 5 HOH B 19 619 52 HOH HOH . 
JA 5 HOH B 20 620 205 HOH HOH . 
JA 5 HOH B 21 621 56 HOH HOH . 
JA 5 HOH B 22 622 84 HOH HOH . 
JA 5 HOH B 23 623 251 HOH HOH . 
JA 5 HOH B 24 624 57 HOH HOH . 
JA 5 HOH B 25 625 199 HOH HOH . 
JA 5 HOH B 26 626 102 HOH HOH . 
JA 5 HOH B 27 627 103 HOH HOH . 
JA 5 HOH B 28 628 87 HOH HOH . 
JA 5 HOH B 29 629 4 HOH HOH . 
JA 5 HOH B 30 630 259 HOH HOH . 
JA 5 HOH B 31 631 48 HOH HOH . 
JA 5 HOH B 32 632 54 HOH HOH . 
JA 5 HOH B 33 633 104 HOH HOH . 
JA 5 HOH B 34 634 7 HOH HOH . 
JA 5 HOH B 35 635 192 HOH HOH . 
JA 5 HOH B 36 636 91 HOH HOH . 
JA 5 HOH B 37 637 11 HOH HOH . 
JA 5 HOH B 38 638 107 HOH HOH . 
JA 5 HOH B 39 639 50 HOH HOH . 
JA 5 HOH B 40 640 179 HOH HOH . 
JA 5 HOH B 41 641 112 HOH HOH . 
JA 5 HOH B 42 642 70 HOH HOH . 
JA 5 HOH B 43 643 217 HOH HOH . 
JA 5 HOH B 44 644 29 HOH HOH . 
JA 5 HOH B 45 645 9 HOH HOH . 
JA 5 HOH B 46 646 20 HOH HOH . 
JA 5 HOH B 47 647 2 HOH HOH . 
JA 5 HOH B 48 648 92 HOH HOH . 
JA 5 HOH B 49 649 154 HOH HOH . 
JA 5 HOH B 50 650 59 HOH HOH . 
JA 5 HOH B 51 651 241 HOH HOH . 
JA 5 HOH B 52 652 99 HOH HOH . 
JA 5 HOH B 53 653 126 HOH HOH . 
JA 5 HOH B 54 654 248 HOH HOH . 
JA 5 HOH B 55 655 46 HOH HOH . 
JA 5 HOH B 56 656 273 HOH HOH . 
JA 5 HOH B 57 657 72 HOH HOH . 
JA 5 HOH B 58 658 3 HOH HOH . 
JA 5 HOH B 59 659 158 HOH HOH . 
JA 5 HOH B 60 660 105 HOH HOH . 
JA 5 HOH B 61 661 160 HOH HOH . 
JA 5 HOH B 62 662 188 HOH HOH . 
JA 5 HOH B 63 663 157 HOH HOH . 
JA 5 HOH B 64 664 8 HOH HOH . 
JA 5 HOH B 65 665 63 HOH HOH . 
JA 5 HOH B 66 666 111 HOH HOH . 
JA 5 HOH B 67 667 122 HOH HOH . 
JA 5 HOH B 68 668 146 HOH HOH . 
JA 5 HOH B 69 669 23 HOH HOH . 
JA 5 HOH B 70 670 174 HOH HOH . 
JA 5 HOH B 71 671 201 HOH HOH . 
JA 5 HOH B 72 672 64 HOH HOH . 
JA 5 HOH B 73 673 62 HOH HOH . 
JA 5 HOH B 74 674 250 HOH HOH . 
JA 5 HOH B 75 675 113 HOH HOH . 
JA 5 HOH B 76 676 139 HOH HOH . 
JA 5 HOH B 77 677 80 HOH HOH . 
JA 5 HOH B 78 678 166 HOH HOH . 
JA 5 HOH B 79 679 40 HOH HOH . 
JA 5 HOH B 80 680 185 HOH HOH . 
JA 5 HOH B 81 681 14 HOH HOH . 
JA 5 HOH B 82 682 254 HOH HOH . 
JA 5 HOH B 83 683 132 HOH HOH . 
JA 5 HOH B 84 684 229 HOH HOH . 
JA 5 HOH B 85 685 215 HOH HOH . 
JA 5 HOH B 86 686 94 HOH HOH . 
JA 5 HOH B 87 687 171 HOH HOH . 
JA 5 HOH B 88 688 210 HOH HOH . 
JA 5 HOH B 89 689 178 HOH HOH . 
JA 5 HOH B 90 690 238 HOH HOH . 
JA 5 HOH B 91 691 149 HOH HOH . 
JA 5 HOH B 92 692 101 HOH HOH . 
JA 5 HOH B 93 693 233 HOH HOH . 
JA 5 HOH B 94 694 276 HOH HOH . 
JA 5 HOH B 95 695 256 HOH HOH . 
JA 5 HOH B 96 696 165 HOH HOH . 
JA 5 HOH B 97 697 120 HOH HOH . 
JA 5 HOH B 98 698 195 HOH HOH . 
JA 5 HOH B 99 699 227 HOH HOH . 
JA 5 HOH B 100 700 156 HOH HOH . 
JA 5 HOH B 101 701 117 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . F 3 13.21 -12.071 0.831 1 50.21 ? C1 EDO 504 A 1 
HETATM 2 O O1 EDO . . . F 3 13.651 -12.395 -0.465 1 50.84 ? O1 EDO 504 A 1 
HETATM 3 C C2 EDO . . . F 3 12.107 -13.037 1.251 1 52.57 ? C2 EDO 504 A 1 
HETATM 4 O O2 EDO . . . F 3 11.023 -12.925 0.37 1 47.43 ? O2 EDO 504 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           4 
#