data_8IED # _model_server_result.job_id uBT338G_qJj391iRaOO56w _model_server_result.datetime_utc '2024-10-19 11:49:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ied # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":601}' # _entry.id 8IED # _exptl.entry_id 8IED _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 760.076 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2R)-3-[(E)-hexadec-9-enoyl]oxy-2-octadecanoyloxy-propyl] 2-(trimethylazaniumyl)ethyl phosphate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8IED _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8IED _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 191 A CYS 191 1_555 A SG CYS 216 A CYS 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 B SG CYS 191 B CYS 191 1_555 B SG CYS 216 B CYS 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 E SG CYS 159 N CYS 147 1_555 E SG CYS 229 N CYS 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C42 H82 N O8 P' _chem_comp.formula_weight 760.076 _chem_comp.id A1LYA _chem_comp.mon_nstd_flag . _chem_comp.name '[(2R)-3-[(E)-hexadec-9-enoyl]oxy-2-octadecanoyloxy-propyl] 2-(trimethylazaniumyl)ethyl phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C13 N A1LYA sing 1 n n O22 C21 A1LYA doub 2 n n C14 N A1LYA sing 3 n n N C15 A1LYA sing 4 n n N C12 A1LYA sing 5 n n C21 C22 A1LYA sing 6 n n C21 O21 A1LYA sing 7 n n C11 C12 A1LYA sing 8 n n C11 O13 A1LYA sing 9 n n C22 C23 A1LYA sing 10 n n C2 C3 A1LYA sing 11 n n C2 O21 A1LYA sing 12 n n C2 C1 A1LYA sing 13 n n C3 O31 A1LYA sing 14 n n C23 C24 A1LYA sing 15 n n O11 C1 A1LYA sing 16 n n O11 P A1LYA sing 17 n n O13 P A1LYA sing 18 n n O31 C31 A1LYA sing 19 n n P O14 A1LYA doub 20 n n P O12 A1LYA sing 21 n n C24 C25 A1LYA sing 22 n n C25 C26 A1LYA sing 23 n n C31 O32 A1LYA doub 24 n n C31 C32 A1LYA sing 25 n n C26 C27 A1LYA sing 26 n n C32 C33 A1LYA sing 27 n n C27 C28 A1LYA sing 28 n n C33 C34 A1LYA sing 29 n n C34 C35 A1LYA sing 30 n n C28 C29 A1LYA sing 31 n n C35 C36 A1LYA sing 32 n n C29 C2A A1LYA sing 33 n n C36 C37 A1LYA sing 34 n n C2A C2B A1LYA sing 35 n n C37 C38 A1LYA sing 36 n n C2C C2B A1LYA sing 37 n n C2C C2D A1LYA sing 38 n n C38 C39 A1LYA sing 39 n n C2D C2E A1LYA sing 40 n n C2F C2E A1LYA sing 41 n n C2F C2G A1LYA sing 42 n n C39 C3A A1LYA doub 43 e n C2G C2H A1LYA sing 44 n n C3A C3B A1LYA sing 45 n n C3B C3C A1LYA sing 46 n n C3C C3D A1LYA sing 47 n n C2H C2I A1LYA sing 48 n n C3E C3D A1LYA sing 49 n n C3E C3F A1LYA sing 50 n n C3G C3F A1LYA sing 51 n n C11 H2 A1LYA sing 52 n n C11 H3 A1LYA sing 53 n n C12 H4 A1LYA sing 54 n n C12 H5 A1LYA sing 55 n n C13 H6 A1LYA sing 56 n n C13 H7 A1LYA sing 57 n n C13 H8 A1LYA sing 58 n n C14 H9 A1LYA sing 59 n n C14 H10 A1LYA sing 60 n n C14 H11 A1LYA sing 61 n n C15 H12 A1LYA sing 62 n n C15 H13 A1LYA sing 63 n n C15 H14 A1LYA sing 64 n n C1 H15 A1LYA sing 65 n n C1 H16 A1LYA sing 66 n n C2 H17 A1LYA sing 67 n n C22 H18 A1LYA sing 68 n n C22 H19 A1LYA sing 69 n n C23 H20 A1LYA sing 70 n n C23 H21 A1LYA sing 71 n n C24 H22 A1LYA sing 72 n n C24 H23 A1LYA sing 73 n n C25 H24 A1LYA sing 74 n n C25 H25 A1LYA sing 75 n n C26 H26 A1LYA sing 76 n n C26 H27 A1LYA sing 77 n n C27 H28 A1LYA sing 78 n n C27 H29 A1LYA sing 79 n n C28 H30 A1LYA sing 80 n n C28 H31 A1LYA sing 81 n n C29 H32 A1LYA sing 82 n n C29 H33 A1LYA sing 83 n n C2A H34 A1LYA sing 84 n n C2A H35 A1LYA sing 85 n n C2B H36 A1LYA sing 86 n n C2B H37 A1LYA sing 87 n n C2C H38 A1LYA sing 88 n n C2C H39 A1LYA sing 89 n n C2D H40 A1LYA sing 90 n n C2D H41 A1LYA sing 91 n n C2E H42 A1LYA sing 92 n n C2E H43 A1LYA sing 93 n n C2F H44 A1LYA sing 94 n n C2F H45 A1LYA sing 95 n n C2G H46 A1LYA sing 96 n n C2G H47 A1LYA sing 97 n n C2H H48 A1LYA sing 98 n n C2H H49 A1LYA sing 99 n n C2I H50 A1LYA sing 100 n n C2I H51 A1LYA sing 101 n n C2I H52 A1LYA sing 102 n n C3 H53 A1LYA sing 103 n n C3 H54 A1LYA sing 104 n n C32 H55 A1LYA sing 105 n n C32 H56 A1LYA sing 106 n n C33 H57 A1LYA sing 107 n n C33 H58 A1LYA sing 108 n n C34 H59 A1LYA sing 109 n n C34 H60 A1LYA sing 110 n n C35 H61 A1LYA sing 111 n n C35 H62 A1LYA sing 112 n n C36 H63 A1LYA sing 113 n n C36 H64 A1LYA sing 114 n n C37 H65 A1LYA sing 115 n n C37 H66 A1LYA sing 116 n n C38 H67 A1LYA sing 117 n n C38 H68 A1LYA sing 118 n n C39 H69 A1LYA sing 119 n n C3A H70 A1LYA sing 120 n n C3B H71 A1LYA sing 121 n n C3B H72 A1LYA sing 122 n n C3C H73 A1LYA sing 123 n n C3C H74 A1LYA sing 124 n n C3D H75 A1LYA sing 125 n n C3D H76 A1LYA sing 126 n n C3E H77 A1LYA sing 127 n n C3E H78 A1LYA sing 128 n n C3F H79 A1LYA sing 129 n n C3F H80 A1LYA sing 130 n n C3G H81 A1LYA sing 131 n n C3G H82 A1LYA sing 132 n n C3G H83 A1LYA sing 133 n n # _atom_sites.entry_id 8IED _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 6 A1LYA A 1 601 401 A1LYA PC1 . H 6 A1LYA B 1 601 401 A1LYA PC1 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O12 A1LYA . . . G 6 173.605 158.346 121.126 1 63.53 ? O12 A1LYA 601 A 1 HETATM 2 P P A1LYA . . . G 6 174.022 159.092 119.88 1 61.92 ? P A1LYA 601 A 1 HETATM 3 O O14 A1LYA . . . G 6 174.38 160.507 120.238 1 66.08 ? O14 A1LYA 601 A 1 HETATM 4 O O13 A1LYA . . . G 6 175.335 158.315 119.18 1 55.5 ? O13 A1LYA 601 A 1 HETATM 5 C C11 A1LYA . . . G 6 175.927 158.916 118.032 1 58.29 ? C11 A1LYA 601 A 1 HETATM 6 C C12 A1LYA . . . G 6 177.065 159.869 118.514 1 66.97 ? C12 A1LYA 601 A 1 HETATM 7 N N A1LYA . . . G 6 177.466 160.817 117.447 1 68.21 ? N A1LYA 601 A 1 HETATM 8 C C13 A1LYA . . . G 6 177.97 160.088 116.307 1 62.46 ? C13 A1LYA 601 A 1 HETATM 9 C C14 A1LYA . . . G 6 176.312 161.624 117.045 1 67.6 ? C14 A1LYA 601 A 1 HETATM 10 C C15 A1LYA . . . G 6 178.518 161.695 117.957 1 64.88 ? C15 A1LYA 601 A 1 HETATM 11 O O11 A1LYA . . . G 6 172.758 159.105 118.78 1 64.07 ? O11 A1LYA 601 A 1 HETATM 12 C C1 A1LYA . . . G 6 171.51 159.654 119.202 1 63 ? C1 A1LYA 601 A 1 HETATM 13 C C2 A1LYA . . . G 6 170.373 158.975 118.388 1 56.65 ? C2 A1LYA 601 A 1 HETATM 14 O O21 A1LYA . . . G 6 169.18 159.538 118.795 1 60.2 ? O21 A1LYA 601 A 1 HETATM 15 C C21 A1LYA . . . G 6 168.62 160.379 117.866 1 64.35 ? C21 A1LYA 601 A 1 HETATM 16 O O22 A1LYA . . . G 6 168.846 160.226 116.707 1 68.77 ? O22 A1LYA 601 A 1 HETATM 17 C C22 A1LYA . . . G 6 167.708 161.496 118.324 1 60.62 ? C22 A1LYA 601 A 1 HETATM 18 C C23 A1LYA . . . G 6 166.305 161.006 118.652 1 59.03 ? C23 A1LYA 601 A 1 HETATM 19 C C24 A1LYA . . . G 6 165.926 161.218 120.13 1 56.26 ? C24 A1LYA 601 A 1 HETATM 20 C C25 A1LYA . . . G 6 165.156 159.995 120.703 1 61.07 ? C25 A1LYA 601 A 1 HETATM 21 C C26 A1LYA . . . G 6 164.261 160.381 121.928 1 60.22 ? C26 A1LYA 601 A 1 HETATM 22 C C27 A1LYA . . . G 6 164.937 159.953 123.271 1 66.78 ? C27 A1LYA 601 A 1 HETATM 23 C C28 A1LYA . . . G 6 164.088 158.897 124.046 1 66.91 ? C28 A1LYA 601 A 1 HETATM 24 C C29 A1LYA . . . G 6 164.362 158.95 125.579 1 67.47 ? C29 A1LYA 601 A 1 HETATM 25 C C2A A1LYA . . . G 6 163.158 158.406 126.396 1 66.27 ? C2A A1LYA 601 A 1 HETATM 26 C C2B A1LYA . . . G 6 162.946 159.224 127.694 1 66.05 ? C2B A1LYA 601 A 1 HETATM 27 C C2C A1LYA . . . G 6 161.976 160.413 127.445 1 62.94 ? C2C A1LYA 601 A 1 HETATM 28 C C2D A1LYA . . . G 6 161.86 161.347 128.679 1 66.18 ? C2D A1LYA 601 A 1 HETATM 29 C C2E A1LYA . . . G 6 163.256 161.765 129.23 1 69.9 ? C2E A1LYA 601 A 1 HETATM 30 C C2F A1LYA . . . G 6 163.651 163.195 128.788 1 70.55 ? C2F A1LYA 601 A 1 HETATM 31 C C2G A1LYA . . . G 6 164.458 163.928 129.882 1 65.23 ? C2G A1LYA 601 A 1 HETATM 32 C C2H A1LYA . . . G 6 163.75 163.865 131.245 1 62.29 ? C2H A1LYA 601 A 1 HETATM 33 C C2I A1LYA . . . G 6 163.998 165.122 132.082 1 67.69 ? C2I A1LYA 601 A 1 HETATM 34 C C3 A1LYA . . . G 6 170.266 157.451 118.645 1 59.47 ? C3 A1LYA 601 A 1 HETATM 35 O O31 A1LYA . . . G 6 170.963 157.181 119.846 1 61.78 ? O31 A1LYA 601 A 1 HETATM 36 C C31 A1LYA . . . G 6 170.1 156.851 120.922 1 65.69 ? C31 A1LYA 601 A 1 HETATM 37 O O32 A1LYA . . . G 6 169.568 155.788 120.943 1 66.92 ? O32 A1LYA 601 A 1 HETATM 38 C C32 A1LYA . . . G 6 169.85 157.896 122.027 1 65.7 ? C32 A1LYA 601 A 1 HETATM 39 C C33 A1LYA . . . G 6 170.223 157.396 123.439 1 67.73 ? C33 A1LYA 601 A 1 HETATM 40 C C34 A1LYA . . . G 6 169.145 156.477 124.039 1 65.35 ? C34 A1LYA 601 A 1 HETATM 41 C C35 A1LYA . . . G 6 168.947 156.751 125.532 1 61.06 ? C35 A1LYA 601 A 1 HETATM 42 C C36 A1LYA . . . G 6 167.467 157.018 125.842 1 63.55 ? C36 A1LYA 601 A 1 HETATM 43 C C37 A1LYA . . . G 6 166.924 156 126.837 1 63.69 ? C37 A1LYA 601 A 1 HETATM 44 C C38 A1LYA . . . G 6 167.185 156.478 128.269 1 65.66 ? C38 A1LYA 601 A 1 HETATM 45 C C39 A1LYA . . . G 6 165.893 156.99 128.902 1 59 ? C39 A1LYA 601 A 1 HETATM 46 C C3A A1LYA . . . G 6 165.634 156.649 130.149 1 58.06 ? C3A A1LYA 601 A 1 HETATM 47 C C3B A1LYA . . . G 6 164.348 157.141 130.825 1 59.58 ? C3B A1LYA 601 A 1 HETATM 48 C C3C A1LYA . . . G 6 163.423 155.947 131.135 1 62.54 ? C3C A1LYA 601 A 1 HETATM 49 C C3D A1LYA . . . G 6 162.329 156.321 132.168 1 61.36 ? C3D A1LYA 601 A 1 HETATM 50 C C3E A1LYA . . . G 6 160.93 155.795 131.773 1 60.86 ? C3E A1LYA 601 A 1 HETATM 51 C C3F A1LYA . . . G 6 160.046 155.547 133.017 1 65.24 ? C3F A1LYA 601 A 1 HETATM 52 C C3G A1LYA . . . G 6 158.76 156.385 132.986 1 64.77 ? C3G A1LYA 601 A 1 # _model_server_stats.io_time_ms 76 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 52 #