data_8IF2 # _model_server_result.job_id qhwv-W8QMqA4f1LmjQLN6g _model_server_result.datetime_utc '2024-11-21 09:06:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8if2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":702}' # _entry.id 8IF2 # _exptl.entry_id 8IF2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8IF2 _cell.length_a 120.052 _cell.length_b 120.052 _cell.length_c 167.416 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8IF2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 153 _symmetry.space_group_name_Hall 'P 32 2 (x,y,z+1/6)' _symmetry.space_group_name_H-M 'P 32 1 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide 5 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 4 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 5 ? 4 4 3 MAN BMA C1 O1 . O6 HO6 . sing 6 ? 4 5 4 MAN MAN C1 O1 . O3 HO3 . sing 7 ? 4 6 4 MAN MAN C1 O1 . O6 HO6 . sing 8 ? 4 7 3 MAN BMA C1 O1 . O3 HO3 . sing 9 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 J 1 NAG J 1 NAG 3 n C NAG 2 J 2 NAG J 2 NAG 3 n C BMA 3 J 3 BMA J 3 BMA 4 n D NAG 1 K 1 NAG K 1 NAG 4 n D NAG 2 K 2 NAG K 2 NAG 4 n D BMA 3 K 3 BMA K 3 BMA 4 n D MAN 4 K 4 MAN K 5 MAN 4 n D MAN 5 K 5 MAN K 6 MAN 4 n D MAN 6 K 6 MAN K 7 MAN 4 n D MAN 7 K 7 MAN K 4 MAN 5 n E NAG 1 L 1 NAG L 1 NAG 5 n E NAG 2 L 2 NAG L 2 NAG 3 n F NAG 1 N 1 NAG N 1 NAG 3 n F NAG 2 N 2 NAG N 2 NAG 3 n F BMA 3 N 3 BMA N 3 BMA 3 n G NAG 1 O 1 NAG O 1 NAG 3 n G NAG 2 O 2 NAG O 2 NAG 3 n G BMA 3 O 3 BMA O 3 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 115 A CYS 133 1_555 A SG CYS 123 A CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 326 A CYS 344 1_555 A SG CYS 343 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 512 A CYS 530 1_555 A SG CYS 524 A CYS 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 B SG CYS 15 B CYS 336 1_555 B SG CYS 40 B CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 B SG CYS 58 B CYS 379 1_555 B SG CYS 111 B CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 B SG CYS 70 B CYS 391 1_555 B SG CYS 204 B CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf7 B SG CYS 159 B CYS 480 1_555 B SG CYS 167 B CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A ND2 ASN 35 A ASN 53 1_555 C C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 ? covale ? covale2 A ND2 ASN 72 A ASN 90 1_555 D C1 NAG . K NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale3 A ND2 ASN 304 A ASN 322 1_555 E C1 NAG . L NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale4 A ND2 ASN 414 A ASN 432 1_555 I C1 NAG . A NAG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale5 A ND2 ASN 528 A ASN 546 1_555 F C1 NAG . N NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale6 B ND2 ASN 22 B ASN 343 1_555 G C1 NAG . O NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale7 C O4 NAG . J NAG 1 1_555 C C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale8 C O4 NAG . J NAG 2 1_555 C C1 BMA . J BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale9 D O4 NAG . K NAG 1 1_555 D C1 NAG . K NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale10 D O4 NAG . K NAG 2 1_555 D C1 BMA . K BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale11 D O6 BMA . K BMA 3 1_555 D C1 MAN . K MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale12 D O3 BMA . K BMA 3 1_555 D C1 MAN . K MAN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale13 D O3 MAN . K MAN 4 1_555 D C1 MAN . K MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale14 D O6 MAN . K MAN 4 1_555 D C1 MAN . K MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale15 E O4 NAG . L NAG 1 1_555 E C1 NAG . L NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale16 F O4 NAG . N NAG 1 1_555 F C1 NAG . N NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale17 F O4 NAG . N NAG 2 1_555 F C1 BMA . N BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale18 G O4 NAG . O NAG 1 1_555 G C1 NAG . O NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale19 G O4 NAG . O NAG 2 1_555 G C1 BMA . O BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? metalc ? metalc1 A NE2 HIS 356 A HIS 374 1_555 H ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc2 A NE2 HIS 360 A HIS 378 1_555 H ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc3 A OE1 GLU 384 A GLU 402 1_555 H ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? metalc ? metalc4 A OE2 GLU 384 A GLU 402 1_555 H ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.601 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 285 n n C1 O1 NAG sing 286 n n C1 O5 NAG sing 287 n n C1 H1 NAG sing 288 n n C2 C3 NAG sing 289 n n C2 N2 NAG sing 290 n n C2 H2 NAG sing 291 n n C3 C4 NAG sing 292 n n C3 O3 NAG sing 293 n n C3 H3 NAG sing 294 n n C4 C5 NAG sing 295 n n C4 O4 NAG sing 296 n n C4 H4 NAG sing 297 n n C5 C6 NAG sing 298 n n C5 O5 NAG sing 299 n n C5 H5 NAG sing 300 n n C6 O6 NAG sing 301 n n C6 H61 NAG sing 302 n n C6 H62 NAG sing 303 n n C7 C8 NAG sing 304 n n C7 N2 NAG sing 305 n n C7 O7 NAG doub 306 n n C8 H81 NAG sing 307 n n C8 H82 NAG sing 308 n n C8 H83 NAG sing 309 n n N2 HN2 NAG sing 310 n n O1 HO1 NAG sing 311 n n O3 HO3 NAG sing 312 n n O4 HO4 NAG sing 313 n n O6 HO6 NAG sing 314 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8IF2 _atom_sites.fract_transf_matrix[1][1] 0.00833 _atom_sites.fract_transf_matrix[1][2] 0.004809 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009618 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005973 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 6 ZN A 1 701 701 ZN ZN . I 7 NAG A 1 702 1 NAG NAG . J 8 HOH A 1 801 6 HOH HOH . J 8 HOH A 2 802 7 HOH HOH . J 8 HOH A 3 803 12 HOH HOH . J 8 HOH A 4 804 27 HOH HOH . J 8 HOH A 5 805 35 HOH HOH . J 8 HOH A 6 806 8 HOH HOH . J 8 HOH A 7 807 20 HOH HOH . J 8 HOH A 8 808 23 HOH HOH . J 8 HOH A 9 809 16 HOH HOH . J 8 HOH A 10 810 1 HOH HOH . J 8 HOH A 11 811 18 HOH HOH . J 8 HOH A 12 812 28 HOH HOH . J 8 HOH A 13 813 31 HOH HOH . K 8 HOH B 1 601 11 HOH HOH . K 8 HOH B 2 602 4 HOH HOH . K 8 HOH B 3 603 5 HOH HOH . K 8 HOH B 4 604 38 HOH HOH . K 8 HOH B 5 605 3 HOH HOH . K 8 HOH B 6 606 33 HOH HOH . K 8 HOH B 7 607 9 HOH HOH . K 8 HOH B 8 608 19 HOH HOH . K 8 HOH B 9 609 2 HOH HOH . K 8 HOH B 10 610 29 HOH HOH . K 8 HOH B 11 611 14 HOH HOH . K 8 HOH B 12 612 22 HOH HOH . K 8 HOH B 13 613 34 HOH HOH . K 8 HOH B 14 614 17 HOH HOH . K 8 HOH B 15 615 32 HOH HOH . K 8 HOH B 16 616 30 HOH HOH . K 8 HOH B 17 617 15 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . I 7 17.423 54.208 40.007 1 145.93 ? C1 NAG 702 A 1 HETATM 2 C C2 NAG . . . I 7 18.919 53.906 39.888 1 149.85 ? C2 NAG 702 A 1 HETATM 3 C C3 NAG . . . I 7 19.73 55.149 40.262 1 146.47 ? C3 NAG 702 A 1 HETATM 4 C C4 NAG . . . I 7 19.233 56.38 39.51 1 152.18 ? C4 NAG 702 A 1 HETATM 5 C C5 NAG . . . I 7 17.715 56.512 39.616 1 149.37 ? C5 NAG 702 A 1 HETATM 6 C C6 NAG . . . I 7 17.152 57.631 38.772 1 135.35 ? C6 NAG 702 A 1 HETATM 7 C C7 NAG . . . I 7 19.717 51.614 40.266 1 143.09 ? C7 NAG 702 A 1 HETATM 8 C C8 NAG . . . I 7 20.061 50.587 41.294 1 130.05 ? C8 NAG 702 A 1 HETATM 9 N N2 NAG . . . I 7 19.293 52.789 40.738 1 141.78 ? N2 NAG 702 A 1 HETATM 10 O O3 NAG . . . I 7 21.107 54.925 39.981 1 130.15 ? O3 NAG 702 A 1 HETATM 11 O O4 NAG . . . I 7 19.833 57.551 40.053 1 139.97 ? O4 NAG 702 A 1 HETATM 12 O O5 NAG . . . I 7 17.091 55.301 39.168 1 147.96 ? O5 NAG 702 A 1 HETATM 13 O O6 NAG . . . I 7 16.001 57.208 38.054 1 134.91 ? O6 NAG 702 A 1 HETATM 14 O O7 NAG . . . I 7 19.814 51.389 39.064 1 151.81 ? O7 NAG 702 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #