data_8IFS
#
_model_server_result.job_id            65_eV33htWqFlVFeW_wpng 
_model_server_result.datetime_utc      '2024-11-21 11:24:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ifs 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":401}' 
#
_entry.id    8IFS 
#
_exptl.entry_id    8IFS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              552.753 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (8~{S})-7-[(2~{S})-2-(~{tert}-butylcarbamoylamino)-3,3-dimethyl-butanoyl]-~{N}-[(1~{S})-1-cyano-2-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]ethyl]-1,4-dithia-7-azaspiro[4.4]nonane-8-carboxamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          96.91 
_cell.angle_gamma         90 
_cell.entry_id            8IFS 
_cell.length_a            54.542 
_cell.length_b            82.106 
_cell.length_c            86.394 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8IFS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C25 H40 N6 O4 S2' 
_chem_comp.formula_weight    552.753 
_chem_comp.id                OZL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (8~{S})-7-[(2~{S})-2-(~{tert}-butylcarbamoylamino)-3,3-dimethyl-butanoyl]-~{N}-[(1~{S})-1-cyano-2-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]ethyl]-1,4-dithia-7-azaspiro[4.4]nonane-8-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C21 C19 OZL sing 237 n n 
C22 C19 OZL sing 238 n n 
S2 C13 OZL sing 239 n n 
S2 C11 OZL sing 240 n n 
C19 C16 OZL sing 241 n n 
C19 C20 OZL sing 242 n n 
C14 C11 OZL sing 243 n n 
C14 N4 OZL sing 244 n n 
C13 C12 OZL sing 245 n n 
O3 C17 OZL doub 246 n n 
C16 N5 OZL sing 247 n n 
C16 C15 OZL sing 248 n n 
C11 C10 OZL sing 249 n n 
C11 S1 OZL sing 250 n n 
O1 C1 OZL doub 251 n n 
C23 C18 OZL sing 252 n n 
C12 S1 OZL sing 253 n n 
C17 N5 OZL sing 254 n n 
C17 N6 OZL sing 255 n n 
N4 C15 OZL sing 256 n n 
N4 C9 OZL sing 257 n n 
C10 C9 OZL sing 258 n n 
C15 O4 OZL doub 259 n n 
C5 C6 OZL sing 260 n n 
C5 C4 OZL sing 261 n n 
C1 C9 OZL sing 262 n n 
C1 N1 OZL sing 263 n n 
N6 C18 OZL sing 264 n n 
C24 C18 OZL sing 265 n n 
C6 N2 OZL sing 266 n n 
C18 C25 OZL sing 267 n n 
C2 N1 OZL sing 268 n n 
C2 C8 OZL sing 269 n n 
C2 C3 OZL sing 270 n n 
C8 N3 OZL trip 271 n n 
C4 C3 OZL sing 272 n n 
C4 C7 OZL sing 273 n n 
N2 C7 OZL sing 274 n n 
C7 O2 OZL doub 275 n n 
N1 H1 OZL sing 276 n n 
C4 H3 OZL sing 277 n n 
C5 H4 OZL sing 278 n n 
C5 H5 OZL sing 279 n n 
C6 H6 OZL sing 280 n n 
C6 H7 OZL sing 281 n n 
C10 H9 OZL sing 282 n n 
C10 H10 OZL sing 283 n n 
C13 H11 OZL sing 284 n n 
C13 H12 OZL sing 285 n n 
C20 H13 OZL sing 286 n n 
C20 H14 OZL sing 287 n n 
C20 H15 OZL sing 288 n n 
C21 H16 OZL sing 289 n n 
C21 H17 OZL sing 290 n n 
C21 H18 OZL sing 291 n n 
C22 H19 OZL sing 292 n n 
C22 H20 OZL sing 293 n n 
C22 H21 OZL sing 294 n n 
C24 H22 OZL sing 295 n n 
C24 H23 OZL sing 296 n n 
C24 H24 OZL sing 297 n n 
C12 H25 OZL sing 298 n n 
C12 H26 OZL sing 299 n n 
C14 H27 OZL sing 300 n n 
C14 H28 OZL sing 301 n n 
C16 H29 OZL sing 302 n n 
C2 H30 OZL sing 303 n n 
C23 H31 OZL sing 304 n n 
C23 H32 OZL sing 305 n n 
C23 H33 OZL sing 306 n n 
C25 H34 OZL sing 307 n n 
C25 H35 OZL sing 308 n n 
C25 H36 OZL sing 309 n n 
C3 H37 OZL sing 310 n n 
C3 H38 OZL sing 311 n n 
C9 H39 OZL sing 312 n n 
N2 H40 OZL sing 313 n n 
N5 H41 OZL sing 314 n n 
N6 H42 OZL sing 315 n n 
#
_atom_sites.entry_id                     8IFS 
_atom_sites.fract_transf_matrix[1][1]    0.018334 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002221 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012179 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01166 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 OZL A 1 401 401 OZL LIG . 
D 2 OZL B 1 401 401 OZL LIG . 
E 3 HOH A 1 501 9 HOH HOH . 
E 3 HOH A 2 502 4 HOH HOH . 
E 3 HOH A 3 503 2 HOH HOH . 
E 3 HOH A 4 504 5 HOH HOH . 
E 3 HOH A 5 505 8 HOH HOH . 
E 3 HOH A 6 506 7 HOH HOH . 
F 3 HOH B 1 501 1 HOH HOH . 
F 3 HOH B 2 502 3 HOH HOH . 
F 3 HOH B 3 503 6 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 OZL . . . D 2 -31.032 16.454 38.52 1 59.29 ? N1 OZL 401 B 1 
HETATM 2 N N3 OZL . . . D 2 -29.113 19.388 38.214 1 49.07 ? N3 OZL 401 B 1 
HETATM 3 C C4 OZL . . . D 2 -28.897 14.772 37.758 1 61.53 ? C4 OZL 401 B 1 
HETATM 4 C C5 OZL . . . D 2 -27.892 14.325 38.795 1 62.49 ? C5 OZL 401 B 1 
HETATM 5 C C6 OZL . . . D 2 -26.912 13.46 38.055 1 62.84 ? C6 OZL 401 B 1 
HETATM 6 C C7 OZL . . . D 2 -28.328 14.262 36.464 1 62.61 ? C7 OZL 401 B 1 
HETATM 7 C C8 OZL . . . D 2 -29.803 18.401 37.753 1 49.26 ? C8 OZL 401 B 1 
HETATM 8 C C10 OZL . . . D 2 -34.48 17.729 39.273 1 65.34 ? C10 OZL 401 B 1 
HETATM 9 C C13 OZL . . . D 2 -38.281 17.2 40.142 1 69.75 ? C13 OZL 401 B 1 
HETATM 10 C C15 OZL . . . D 2 -33.042 14.443 39.201 1 61.64 ? C15 OZL 401 B 1 
HETATM 11 C C17 OZL . . . D 2 -35.258 12.019 39.493 1 61.67 ? C17 OZL 401 B 1 
HETATM 12 C C20 OZL . . . D 2 -31.04 12.206 39.769 1 60.86 ? C20 OZL 401 B 1 
HETATM 13 C C21 OZL . . . D 2 -32.286 11.721 41.849 1 58.75 ? C21 OZL 401 B 1 
HETATM 14 C C22 OZL . . . D 2 -31.306 13.977 41.472 1 58.76 ? C22 OZL 401 B 1 
HETATM 15 C C24 OZL . . . D 2 -37.292 10.212 37.048 1 59.09 ? C24 OZL 401 B 1 
HETATM 16 C C1 OZL . . . D 2 -32.043 17.215 38.948 1 63.65 ? C1 OZL 401 B 1 
HETATM 17 C C11 OZL . . . D 2 -35.646 16.854 39.696 1 66.9 ? C11 OZL 401 B 1 
HETATM 18 C C12 OZL . . . D 2 -38.069 16.126 39.227 1 69.54 ? C12 OZL 401 B 1 
HETATM 19 C C14 OZL . . . D 2 -34.951 15.648 40.273 1 65.34 ? C14 OZL 401 B 1 
HETATM 20 C C16 OZL . . . D 2 -33.266 13.254 40.124 1 59.88 ? C16 OZL 401 B 1 
HETATM 21 C C18 OZL . . . D 2 -37.17 10.796 38.436 1 60.26 ? C18 OZL 401 B 1 
HETATM 22 C C19 OZL . . . D 2 -31.993 12.791 40.801 1 59.7 ? C19 OZL 401 B 1 
HETATM 23 C C2 OZL . . . D 2 -29.685 17.005 38.498 1 55.59 ? C2 OZL 401 B 1 
HETATM 24 C C23 OZL . . . D 2 -37.919 12.11 38.498 1 60.42 ? C23 OZL 401 B 1 
HETATM 25 C C25 OZL . . . D 2 -37.726 9.819 39.451 1 60.65 ? C25 OZL 401 B 1 
HETATM 26 C C3 OZL . . . D 2 -28.842 16.235 37.508 1 58.1 ? C3 OZL 401 B 1 
HETATM 27 C C9 OZL . . . D 2 -33.467 16.745 38.688 1 64.94 ? C9 OZL 401 B 1 
HETATM 28 N N2 OZL . . . D 2 -27.505 13.33 36.732 1 63.12 ? N2 OZL 401 B 1 
HETATM 29 N N4 OZL . . . D 2 -33.782 15.524 39.408 1 64.76 ? N4 OZL 401 B 1 
HETATM 30 N N5 OZL . . . D 2 -33.931 12.191 39.412 1 60.33 ? N5 OZL 401 B 1 
HETATM 31 N N6 OZL . . . D 2 -35.749 11.036 38.737 1 61.03 ? N6 OZL 401 B 1 
HETATM 32 O O1 OZL . . . D 2 -31.854 18.286 39.509 1 65.64 ? O1 OZL 401 B 1 
HETATM 33 O O2 OZL . . . D 2 -28.578 14.714 35.368 1 63.58 ? O2 OZL 401 B 1 
HETATM 34 O O3 OZL . . . D 2 -35.933 12.712 40.217 1 63.39 ? O3 OZL 401 B 1 
HETATM 35 O O4 OZL . . . D 2 -32.233 14.437 38.313 1 61.04 ? O4 OZL 401 B 1 
HETATM 36 S S1 OZL . . . D 2 -36.64 16.436 38.227 1 68.08 ? S1 OZL 401 B 1 
HETATM 37 S S2 OZL . . . D 2 -36.751 17.576 40.968 1 69.67 ? S2 OZL 401 B 1 
#
_model_server_stats.io_time_ms              115 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    33 
_model_server_stats.query_time_ms           327 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           37 
#