data_8IG4
#
_model_server_result.job_id            kbE-UBxmhDh6kzh219JCvw 
_model_server_result.datetime_utc      '2024-11-07 18:47:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ig4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":401}' 
#
_entry.id    8IG4 
#
_exptl.entry_id    8IG4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              405.488 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N~2~-[(benzyloxy)carbonyl]-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-leucinamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          108.337 
_cell.angle_gamma         90 
_cell.entry_id            8IG4 
_cell.length_a            55.284 
_cell.length_b            98.621 
_cell.length_c            59.161 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8IG4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 143 A CYS 145 1_555 C C21 UED . A UED 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? 
covale ? covale2 B SG CYS 143 B CYS 145 1_555 D C21 UED . B UED 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? 
#
_chem_comp.formula           'C21 H31 N3 O5' 
_chem_comp.formula_weight    405.488 
_chem_comp.id                UED 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N~2~-[(benzyloxy)carbonyl]-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-leucinamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'GC373 bound form, GC376 bound form' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C16 C14 UED sing 358 n n 
C3 C2 UED doub 359 n y 
C3 C4 UED sing 360 n y 
C2 C1 UED sing 361 n y 
C14 C13 UED sing 362 n n 
C14 C15 UED sing 363 n n 
C13 C12 UED sing 364 n n 
C4 C5 UED doub 365 n y 
O8 C7 UED sing 366 n n 
O8 C9 UED sing 367 n n 
N11 C12 UED sing 368 n n 
N11 C9 UED sing 369 n n 
C1 C7 UED sing 370 n n 
C1 C6 UED doub 371 n y 
O18 C17 UED doub 372 n n 
C5 C6 UED sing 373 n y 
C12 C17 UED sing 374 n n 
C9 O10 UED doub 375 n n 
C17 N19 UED sing 376 n n 
C26 C27 UED sing 377 n n 
C26 C25 UED sing 378 n n 
N19 C20 UED sing 379 n n 
C20 C21 UED sing 380 n n 
C20 C24 UED sing 381 n n 
C27 N28 UED sing 382 n n 
O22 C21 UED sing 383 n n 
C25 C24 UED sing 384 n n 
C25 C29 UED sing 385 n n 
N28 C29 UED sing 386 n n 
C29 O30 UED doub 387 n n 
C7 H1 UED sing 388 n n 
C7 H2 UED sing 389 n n 
C2 H3 UED sing 390 n n 
C3 H4 UED sing 391 n n 
C4 H5 UED sing 392 n n 
C5 H6 UED sing 393 n n 
C6 H7 UED sing 394 n n 
N11 H8 UED sing 395 n n 
C12 H9 UED sing 396 n n 
C13 H10 UED sing 397 n n 
C13 H11 UED sing 398 n n 
C14 H12 UED sing 399 n n 
C15 H13 UED sing 400 n n 
C15 H14 UED sing 401 n n 
C15 H15 UED sing 402 n n 
C16 H16 UED sing 403 n n 
C16 H17 UED sing 404 n n 
C16 H18 UED sing 405 n n 
N19 H19 UED sing 406 n n 
C20 H20 UED sing 407 n n 
C24 H21 UED sing 408 n n 
C24 H22 UED sing 409 n n 
C25 H23 UED sing 410 n n 
C26 H24 UED sing 411 n n 
C26 H25 UED sing 412 n n 
C27 H26 UED sing 413 n n 
C27 H27 UED sing 414 n n 
N28 H28 UED sing 415 n n 
C21 H29 UED sing 416 n n 
C21 H30 UED sing 417 n n 
O22 H31 UED sing 418 n n 
#
_atom_sites.entry_id                     8IG4 
_atom_sites.fract_transf_matrix[1][1]    0.018088 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005995 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01014 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017807 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 UED A 1 401 1 UED DRG . 
D 2 UED B 1 401 2 UED DRG . 
E 3 HOH A 1 501 91 HOH HOH . 
E 3 HOH A 2 502 124 HOH HOH . 
E 3 HOH A 3 503 21 HOH HOH . 
E 3 HOH A 4 504 31 HOH HOH . 
E 3 HOH A 5 505 70 HOH HOH . 
E 3 HOH A 6 506 104 HOH HOH . 
E 3 HOH A 7 507 88 HOH HOH . 
E 3 HOH A 8 508 108 HOH HOH . 
E 3 HOH A 9 509 97 HOH HOH . 
E 3 HOH A 10 510 98 HOH HOH . 
E 3 HOH A 11 511 23 HOH HOH . 
E 3 HOH A 12 512 36 HOH HOH . 
E 3 HOH A 13 513 26 HOH HOH . 
E 3 HOH A 14 514 16 HOH HOH . 
E 3 HOH A 15 515 50 HOH HOH . 
E 3 HOH A 16 516 5 HOH HOH . 
E 3 HOH A 17 517 43 HOH HOH . 
E 3 HOH A 18 518 34 HOH HOH . 
E 3 HOH A 19 519 60 HOH HOH . 
E 3 HOH A 20 520 101 HOH HOH . 
E 3 HOH A 21 521 39 HOH HOH . 
E 3 HOH A 22 522 82 HOH HOH . 
E 3 HOH A 23 523 63 HOH HOH . 
E 3 HOH A 24 524 33 HOH HOH . 
E 3 HOH A 25 525 38 HOH HOH . 
E 3 HOH A 26 526 3 HOH HOH . 
E 3 HOH A 27 527 29 HOH HOH . 
E 3 HOH A 28 528 15 HOH HOH . 
E 3 HOH A 29 529 13 HOH HOH . 
E 3 HOH A 30 530 80 HOH HOH . 
E 3 HOH A 31 531 8 HOH HOH . 
E 3 HOH A 32 532 77 HOH HOH . 
E 3 HOH A 33 533 65 HOH HOH . 
E 3 HOH A 34 534 18 HOH HOH . 
E 3 HOH A 35 535 52 HOH HOH . 
E 3 HOH A 36 536 71 HOH HOH . 
E 3 HOH A 37 537 64 HOH HOH . 
E 3 HOH A 38 538 122 HOH HOH . 
E 3 HOH A 39 539 6 HOH HOH . 
E 3 HOH A 40 540 59 HOH HOH . 
E 3 HOH A 41 541 95 HOH HOH . 
E 3 HOH A 42 542 1 HOH HOH . 
E 3 HOH A 43 543 78 HOH HOH . 
E 3 HOH A 44 544 17 HOH HOH . 
E 3 HOH A 45 545 22 HOH HOH . 
E 3 HOH A 46 546 115 HOH HOH . 
E 3 HOH A 47 547 107 HOH HOH . 
E 3 HOH A 48 548 79 HOH HOH . 
E 3 HOH A 49 549 81 HOH HOH . 
E 3 HOH A 50 550 48 HOH HOH . 
E 3 HOH A 51 551 86 HOH HOH . 
E 3 HOH A 52 552 32 HOH HOH . 
E 3 HOH A 53 553 110 HOH HOH . 
E 3 HOH A 54 554 111 HOH HOH . 
E 3 HOH A 55 555 24 HOH HOH . 
E 3 HOH A 56 556 45 HOH HOH . 
E 3 HOH A 57 557 100 HOH HOH . 
E 3 HOH A 58 558 123 HOH HOH . 
E 3 HOH A 59 559 87 HOH HOH . 
E 3 HOH A 60 560 61 HOH HOH . 
E 3 HOH A 61 561 47 HOH HOH . 
E 3 HOH A 62 562 117 HOH HOH . 
E 3 HOH A 63 563 109 HOH HOH . 
E 3 HOH A 64 564 99 HOH HOH . 
E 3 HOH A 65 565 116 HOH HOH . 
E 3 HOH A 66 566 112 HOH HOH . 
E 3 HOH A 67 567 92 HOH HOH . 
F 3 HOH B 1 501 25 HOH HOH . 
F 3 HOH B 2 502 69 HOH HOH . 
F 3 HOH B 3 503 49 HOH HOH . 
F 3 HOH B 4 504 74 HOH HOH . 
F 3 HOH B 5 505 58 HOH HOH . 
F 3 HOH B 6 506 4 HOH HOH . 
F 3 HOH B 7 507 20 HOH HOH . 
F 3 HOH B 8 508 113 HOH HOH . 
F 3 HOH B 9 509 72 HOH HOH . 
F 3 HOH B 10 510 105 HOH HOH . 
F 3 HOH B 11 511 28 HOH HOH . 
F 3 HOH B 12 512 90 HOH HOH . 
F 3 HOH B 13 513 14 HOH HOH . 
F 3 HOH B 14 514 2 HOH HOH . 
F 3 HOH B 15 515 27 HOH HOH . 
F 3 HOH B 16 516 85 HOH HOH . 
F 3 HOH B 17 517 114 HOH HOH . 
F 3 HOH B 18 518 103 HOH HOH . 
F 3 HOH B 19 519 19 HOH HOH . 
F 3 HOH B 20 520 83 HOH HOH . 
F 3 HOH B 21 521 9 HOH HOH . 
F 3 HOH B 22 522 93 HOH HOH . 
F 3 HOH B 23 523 10 HOH HOH . 
F 3 HOH B 24 524 76 HOH HOH . 
F 3 HOH B 25 525 56 HOH HOH . 
F 3 HOH B 26 526 35 HOH HOH . 
F 3 HOH B 27 527 30 HOH HOH . 
F 3 HOH B 28 528 54 HOH HOH . 
F 3 HOH B 29 529 84 HOH HOH . 
F 3 HOH B 30 530 51 HOH HOH . 
F 3 HOH B 31 531 119 HOH HOH . 
F 3 HOH B 32 532 106 HOH HOH . 
F 3 HOH B 33 533 94 HOH HOH . 
F 3 HOH B 34 534 102 HOH HOH . 
F 3 HOH B 35 535 55 HOH HOH . 
F 3 HOH B 36 536 40 HOH HOH . 
F 3 HOH B 37 537 57 HOH HOH . 
F 3 HOH B 38 538 73 HOH HOH . 
F 3 HOH B 39 539 53 HOH HOH . 
F 3 HOH B 40 540 44 HOH HOH . 
F 3 HOH B 41 541 41 HOH HOH . 
F 3 HOH B 42 542 66 HOH HOH . 
F 3 HOH B 43 543 11 HOH HOH . 
F 3 HOH B 44 544 67 HOH HOH . 
F 3 HOH B 45 545 89 HOH HOH . 
F 3 HOH B 46 546 46 HOH HOH . 
F 3 HOH B 47 547 7 HOH HOH . 
F 3 HOH B 48 548 42 HOH HOH . 
F 3 HOH B 49 549 37 HOH HOH . 
F 3 HOH B 50 550 120 HOH HOH . 
F 3 HOH B 51 551 12 HOH HOH . 
F 3 HOH B 52 552 75 HOH HOH . 
F 3 HOH B 53 553 62 HOH HOH . 
F 3 HOH B 54 554 121 HOH HOH . 
F 3 HOH B 55 555 118 HOH HOH . 
F 3 HOH B 56 556 96 HOH HOH . 
F 3 HOH B 57 557 68 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C7 UED . . . C 2 -20.688 -8.689 -0.153 1 44.72 ? C7 UED 401 A 1 
HETATM 2 O O8 UED . . . C 2 -21.41 -9.734 0.547 1 42.46 ? O8 UED 401 A 1 
HETATM 3 C C9 UED . . . C 2 -20.987 -10.034 1.814 1 38.12 ? C9 UED 401 A 1 
HETATM 4 O O10 UED . . . C 2 -20.268 -9.252 2.433 1 37.02 ? O10 UED 401 A 1 
HETATM 5 C C1 UED . . . C 2 -19.377 -9.073 -0.538 1 48.96 ? C1 UED 401 A 1 
HETATM 6 C C2 UED . . . C 2 -18.467 -8.086 -0.93 1 48.11 ? C2 UED 401 A 1 
HETATM 7 C C3 UED . . . C 2 -17.165 -8.424 -1.31 1 47.63 ? C3 UED 401 A 1 
HETATM 8 C C4 UED . . . C 2 -16.764 -9.758 -1.312 1 48.14 ? C4 UED 401 A 1 
HETATM 9 C C5 UED . . . C 2 -17.665 -10.748 -0.93 1 46.14 ? C5 UED 401 A 1 
HETATM 10 C C6 UED . . . C 2 -18.961 -10.412 -0.545 1 47.86 ? C6 UED 401 A 1 
HETATM 11 N N11 UED . . . C 2 -21.354 -11.194 2.376 1 38.61 ? N11 UED 401 A 1 
HETATM 12 C C12 UED . . . C 2 -20.925 -11.582 3.725 1 33.31 ? C12 UED 401 A 1 
HETATM 13 C C17 UED . . . C 2 -19.409 -11.759 3.727 1 36.72 ? C17 UED 401 A 1 
HETATM 14 O O18 UED . . . C 2 -18.805 -12.271 2.779 1 35.32 ? O18 UED 401 A 1 
HETATM 15 C C13 UED . . . C 2 -21.619 -12.876 4.175 1 37.33 ? C13 UED 401 A 1 
HETATM 16 C C14 UED . . . C 2 -23.131 -12.741 4.022 1 37.28 ? C14 UED 401 A 1 
HETATM 17 C C15 UED . . . C 2 -23.65 -11.559 4.838 1 39.49 ? C15 UED 401 A 1 
HETATM 18 C C16 UED . . . C 2 -23.835 -14.03 4.47 1 37.76 ? C16 UED 401 A 1 
HETATM 19 N N19 UED . . . C 2 -18.795 -11.32 4.831 1 30.08 ? N19 UED 401 A 1 
HETATM 20 C C20 UED . . . C 2 -17.353 -11.435 4.915 1 29.91 ? C20 UED 401 A 1 
HETATM 21 C C21 UED . . . C 2 -17.04 -12.351 6.123 1 28.53 ? C21 UED 401 A 1 
HETATM 22 O O22 UED . . . C 2 -15.651 -12.539 6.159 1 30.75 ? O22 UED 401 A 1 
HETATM 23 C C24 UED . . . C 2 -16.737 -10.002 5.061 1 30 ? C24 UED 401 A 1 
HETATM 24 C C25 UED . . . C 2 -16.634 -9.295 3.689 1 35.42 ? C25 UED 401 A 1 
HETATM 25 C C26 UED . . . C 2 -15.627 -10.017 2.836 1 38.5 ? C26 UED 401 A 1 
HETATM 26 C C27 UED . . . C 2 -15.251 -8.911 1.865 1 39.76 ? C27 UED 401 A 1 
HETATM 27 N N28 UED . . . C 2 -15.223 -7.738 2.785 1 40.38 ? N28 UED 401 A 1 
HETATM 28 C C29 UED . . . C 2 -16.044 -8.014 3.8 1 34.8 ? C29 UED 401 A 1 
HETATM 29 O O30 UED . . . C 2 -16.255 -7.219 4.711 1 34.48 ? O30 UED 401 A 1 
#
_model_server_stats.io_time_ms              71 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           337 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           29 
#