data_8IG5 # _model_server_result.job_id mRuO8AJMpi50gFJGcr9GeA _model_server_result.datetime_utc '2025-01-06 21:44:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ig5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 8IG5 # _exptl.entry_id 8IG5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 405.488 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N~2~-[(benzyloxy)carbonyl]-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-leucinamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 92.045 _cell.angle_beta 102.831 _cell.angle_gamma 109.296 _cell.entry_id 8IG5 _cell.length_a 55.123 _cell.length_b 61.575 _cell.length_c 67.902 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8IG5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall 'P 1' _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 144 A CYS 145 1_555 C C21 UED . A UED 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? covale ? covale2 B SG CYS 144 B CYS 145 1_555 D C21 UED . B UED 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? # _chem_comp.formula 'C21 H31 N3 O5' _chem_comp.formula_weight 405.488 _chem_comp.id UED _chem_comp.mon_nstd_flag . _chem_comp.name N~2~-[(benzyloxy)carbonyl]-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-leucinamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'GC373 bound form, GC376 bound form' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C16 C14 UED sing 358 n n C3 C2 UED doub 359 n y C3 C4 UED sing 360 n y C2 C1 UED sing 361 n y C14 C13 UED sing 362 n n C14 C15 UED sing 363 n n C13 C12 UED sing 364 n n C4 C5 UED doub 365 n y O8 C7 UED sing 366 n n O8 C9 UED sing 367 n n N11 C12 UED sing 368 n n N11 C9 UED sing 369 n n C1 C7 UED sing 370 n n C1 C6 UED doub 371 n y O18 C17 UED doub 372 n n C5 C6 UED sing 373 n y C12 C17 UED sing 374 n n C9 O10 UED doub 375 n n C17 N19 UED sing 376 n n C26 C27 UED sing 377 n n C26 C25 UED sing 378 n n N19 C20 UED sing 379 n n C20 C21 UED sing 380 n n C20 C24 UED sing 381 n n C27 N28 UED sing 382 n n O22 C21 UED sing 383 n n C25 C24 UED sing 384 n n C25 C29 UED sing 385 n n N28 C29 UED sing 386 n n C29 O30 UED doub 387 n n C7 H1 UED sing 388 n n C7 H2 UED sing 389 n n C2 H3 UED sing 390 n n C3 H4 UED sing 391 n n C4 H5 UED sing 392 n n C5 H6 UED sing 393 n n C6 H7 UED sing 394 n n N11 H8 UED sing 395 n n C12 H9 UED sing 396 n n C13 H10 UED sing 397 n n C13 H11 UED sing 398 n n C14 H12 UED sing 399 n n C15 H13 UED sing 400 n n C15 H14 UED sing 401 n n C15 H15 UED sing 402 n n C16 H16 UED sing 403 n n C16 H17 UED sing 404 n n C16 H18 UED sing 405 n n N19 H19 UED sing 406 n n C20 H20 UED sing 407 n n C24 H21 UED sing 408 n n C24 H22 UED sing 409 n n C25 H23 UED sing 410 n n C26 H24 UED sing 411 n n C26 H25 UED sing 412 n n C27 H26 UED sing 413 n n C27 H27 UED sing 414 n n N28 H28 UED sing 415 n n C21 H29 UED sing 416 n n C21 H30 UED sing 417 n n O22 H31 UED sing 418 n n # _atom_sites.entry_id 8IG5 _atom_sites.fract_transf_matrix[1][1] 0.018141 _atom_sites.fract_transf_matrix[1][2] 0.006352 _atom_sites.fract_transf_matrix[1][3] 0.004919 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017207 _atom_sites.fract_transf_matrix[2][3] 0.002054 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015211 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 UED A 1 401 1 UED DRG . D 2 UED B 1 401 2 UED DRG . E 3 HOH A 1 501 16 HOH HOH . E 3 HOH A 2 502 9 HOH HOH . E 3 HOH A 3 503 15 HOH HOH . E 3 HOH A 4 504 26 HOH HOH . E 3 HOH A 5 505 4 HOH HOH . E 3 HOH A 6 506 43 HOH HOH . E 3 HOH A 7 507 14 HOH HOH . E 3 HOH A 8 508 1 HOH HOH . E 3 HOH A 9 509 19 HOH HOH . E 3 HOH A 10 510 11 HOH HOH . E 3 HOH A 11 511 42 HOH HOH . E 3 HOH A 12 512 8 HOH HOH . E 3 HOH A 13 513 22 HOH HOH . E 3 HOH A 14 514 24 HOH HOH . E 3 HOH A 15 515 36 HOH HOH . E 3 HOH A 16 516 31 HOH HOH . E 3 HOH A 17 517 3 HOH HOH . E 3 HOH A 18 518 18 HOH HOH . E 3 HOH A 19 519 40 HOH HOH . E 3 HOH A 20 520 29 HOH HOH . E 3 HOH A 21 521 48 HOH HOH . E 3 HOH A 22 522 17 HOH HOH . E 3 HOH A 23 523 13 HOH HOH . E 3 HOH A 24 524 37 HOH HOH . E 3 HOH A 25 525 50 HOH HOH . E 3 HOH A 26 526 27 HOH HOH . E 3 HOH A 27 527 6 HOH HOH . E 3 HOH A 28 528 5 HOH HOH . E 3 HOH A 29 529 10 HOH HOH . E 3 HOH A 30 530 44 HOH HOH . E 3 HOH A 31 531 39 HOH HOH . F 3 HOH B 1 501 49 HOH HOH . F 3 HOH B 2 502 7 HOH HOH . F 3 HOH B 3 503 45 HOH HOH . F 3 HOH B 4 504 2 HOH HOH . F 3 HOH B 5 505 38 HOH HOH . F 3 HOH B 6 506 28 HOH HOH . F 3 HOH B 7 507 41 HOH HOH . F 3 HOH B 8 508 21 HOH HOH . F 3 HOH B 9 509 56 HOH HOH . F 3 HOH B 10 510 33 HOH HOH . F 3 HOH B 11 511 25 HOH HOH . F 3 HOH B 12 512 52 HOH HOH . F 3 HOH B 13 513 30 HOH HOH . F 3 HOH B 14 514 12 HOH HOH . F 3 HOH B 15 515 23 HOH HOH . F 3 HOH B 16 516 35 HOH HOH . F 3 HOH B 17 517 20 HOH HOH . F 3 HOH B 18 518 55 HOH HOH . F 3 HOH B 19 519 34 HOH HOH . F 3 HOH B 20 520 32 HOH HOH . F 3 HOH B 21 521 46 HOH HOH . F 3 HOH B 22 522 54 HOH HOH . F 3 HOH B 23 523 47 HOH HOH . F 3 HOH B 24 524 53 HOH HOH . F 3 HOH B 25 525 51 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 UED . . . C 2 63.529 -35.637 -4.669 1 58.09 ? C7 UED 401 A 1 HETATM 2 O O8 UED . . . C 2 64.268 -34.595 -4.04 1 54.43 ? O8 UED 401 A 1 HETATM 3 C C9 UED . . . C 2 64.387 -34.663 -2.693 1 53.92 ? C9 UED 401 A 1 HETATM 4 O O10 UED . . . C 2 63.812 -35.533 -2.021 1 47.78 ? O10 UED 401 A 1 HETATM 5 C C1 UED . . . C 2 64.407 -36.529 -5.315 1 58.2 ? C1 UED 401 A 1 HETATM 6 C C2 UED . . . C 2 65.571 -36.979 -4.68 1 55.92 ? C2 UED 401 A 1 HETATM 7 C C3 UED . . . C 2 66.425 -37.89 -5.306 1 55.24 ? C3 UED 401 A 1 HETATM 8 C C4 UED . . . C 2 66.11 -38.355 -6.577 1 59.25 ? C4 UED 401 A 1 HETATM 9 C C5 UED . . . C 2 64.949 -37.903 -7.212 1 63.55 ? C5 UED 401 A 1 HETATM 10 C C6 UED . . . C 2 64.089 -37.007 -6.586 1 57.43 ? C6 UED 401 A 1 HETATM 11 N N11 UED . . . C 2 65.15 -33.739 -2.107 1 51.51 ? N11 UED 401 A 1 HETATM 12 C C12 UED . . . C 2 65.314 -33.713 -0.669 1 47.08 ? C12 UED 401 A 1 HETATM 13 C C17 UED . . . C 2 63.963 -33.283 -0.065 1 45.23 ? C17 UED 401 A 1 HETATM 14 O O18 UED . . . C 2 63.267 -32.431 -0.617 1 45.54 ? O18 UED 401 A 1 HETATM 15 C C13 UED . . . C 2 66.455 -32.767 -0.287 1 45.54 ? C13 UED 401 A 1 HETATM 16 C C14 UED . . . C 2 67.729 -33.236 -1.007 1 51.35 ? C14 UED 401 A 1 HETATM 17 C C15 UED . . . C 2 68.248 -34.498 -0.327 1 53.48 ? C15 UED 401 A 1 HETATM 18 C C16 UED . . . C 2 68.806 -32.146 -0.943 1 52.2 ? C16 UED 401 A 1 HETATM 19 N N19 UED . . . C 2 63.602 -33.903 1.059 1 40.91 ? N19 UED 401 A 1 HETATM 20 C C20 UED . . . C 2 62.344 -33.525 1.732 1 43.47 ? C20 UED 401 A 1 HETATM 21 C C21 UED . . . C 2 62.718 -32.947 3.092 1 44.13 ? C21 UED 401 A 1 HETATM 22 O O22 UED . . . C 2 61.529 -32.446 3.717 1 51.66 ? O22 UED 401 A 1 HETATM 23 C C24 UED . . . C 2 61.341 -34.709 1.875 1 43.13 ? C24 UED 401 A 1 HETATM 24 C C25 UED . . . C 2 61.178 -35.419 0.524 1 37.92 ? C25 UED 401 A 1 HETATM 25 C C26 UED . . . C 2 60.697 -34.445 -0.522 1 46.99 ? C26 UED 401 A 1 HETATM 26 C C27 UED . . . C 2 59.193 -34.681 -0.6 1 47.15 ? C27 UED 401 A 1 HETATM 27 N N28 UED . . . C 2 59.064 -36.099 -0.171 1 44.31 ? N28 UED 401 A 1 HETATM 28 C C29 UED . . . C 2 60.18 -36.433 0.502 1 45.65 ? C29 UED 401 A 1 HETATM 29 O O30 UED . . . C 2 60.349 -37.559 0.97 1 41.56 ? O30 UED 401 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 29 #