data_8IGW
#
_model_server_result.job_id            xk4tgY661KcEvYIALBKGeg 
_model_server_result.datetime_utc      '2024-11-14 19:09:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8igw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"U","auth_seq_id":601}' 
#
_entry.id    8IGW 
#
_exptl.entry_id    8IGW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          93.826 
_cell.angle_gamma         90 
_cell.entry_id            8IGW 
_cell.length_a            179.407 
_cell.length_b            125.077 
_cell.length_c            180.914 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8IGW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA hexameric 6 author_and_software_defined_assembly 1 
PISA hexameric 6 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,M,N,O,P,Q,R,S,T 1 1 
G,H,I,J,K,L,U,V,W,X,Y,Z,AA,BA,CA,DA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 M N N 
? 3 O N N 
? 3 Q N N 
? 3 S N N 
? 3 U N N 
? 3 W N N 
? 3 Y N N 
? 3 AA N N 
? 3 CA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 M O1B ADP . A ADP 601 1_555 N MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.971 ? 
metalc ? metalc2 M O3B ADP . A ADP 601 1_555 N MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.966 ? 
metalc ? metalc3 B OD1 ASP 332 B ASP 329 1_555 P MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? 
metalc ? metalc4 B OD2 ASP 332 B ASP 329 1_555 P MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.832 ? 
metalc ? metalc5 O O2B ADP . B ADP 601 1_555 P MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.653 ? 
metalc ? metalc6 C OG1 THR 242 C THR 239 1_555 R MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.893 ? 
metalc ? metalc7 Q O2B ADP . C ADP 601 1_555 R MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? 
metalc ? metalc8 D OG SER 158 D SER 158 1_555 T MG MG . D MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? 
metalc ? metalc9 G OE1 GLU 268 G GLU 265 1_555 V MG MG . G MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? 
metalc ? metalc10 U O1B ADP . G ADP 601 1_555 V MG MG . G MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? 
metalc ? metalc11 H OG1 THR 242 H THR 239 1_555 X MG MG . H MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? 
metalc ? metalc12 H OE1 GLU 268 H GLU 265 1_555 X MG MG . H MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.612 ? 
metalc ? metalc13 W O2B ADP . H ADP 601 1_555 X MG MG . H MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? 
metalc ? metalc14 I OG1 THR 242 I THR 239 1_555 Z MG MG . I MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.615 ? 
metalc ? metalc15 I OE1 GLU 268 I GLU 265 1_555 Z MG MG . I MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.711 ? 
metalc ? metalc16 Y O2B ADP . I ADP 601 1_555 Z MG MG . I MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.821 ? 
metalc ? metalc17 Y O3B ADP . I ADP 601 1_555 Z MG MG . I MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.874 ? 
metalc ? metalc18 J OG SER 158 J SER 158 1_555 BA MG MG . J MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? 
metalc ? metalc19 AA O3B ADP . J ADP 601 1_555 BA MG MG . J MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.783 ? 
metalc ? metalc20 AA O1A ADP . J ADP 601 1_555 BA MG MG . J MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? 
metalc ? metalc21 L OG SER 158 L SER 158 1_555 DA MG MG . L MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? 
metalc ? metalc22 L OE2 GLU 248 L GLU 248 1_555 DA MG MG . L MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.909 ? 
metalc ? metalc23 CA O2A ADP . L ADP 601 1_555 DA MG MG . L MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     8IGW 
_atom_sites.fract_transf_matrix[1][1]    0.005574 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000373 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007995 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00554 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 3 ADP A 1 601 601 ADP ADP . 
N 4 MG A 1 602 602 MG MG . 
O 3 ADP B 1 601 601 ADP ADP . 
P 4 MG B 1 602 602 MG MG . 
Q 3 ADP C 1 601 601 ADP ADP . 
R 4 MG C 1 602 602 MG MG . 
S 3 ADP D 1 601 601 ADP ADP . 
T 4 MG D 1 602 602 MG MG . 
U 3 ADP G 1 601 601 ADP ADP . 
V 4 MG G 1 602 602 MG MG . 
W 3 ADP H 1 601 601 ADP ADP . 
X 4 MG H 1 602 602 MG MG . 
Y 3 ADP I 1 601 601 ADP ADP . 
Z 4 MG I 1 602 602 MG MG . 
AA 3 ADP J 1 601 601 ADP ADP . 
BA 4 MG J 1 602 602 MG MG . 
CA 3 ADP L 1 601 601 ADP ADP . 
DA 4 MG L 1 602 602 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . U 3 -10.734 33.503 16.528 1 174.04 ? PB ADP 601 G 1 
HETATM 2 O O1B ADP . . . U 3 -10.869 34.639 15.551 1 163.61 ? O1B ADP 601 G 1 
HETATM 3 O O2B ADP . . . U 3 -9.331 32.951 16.573 1 179.91 ? O2B ADP 601 G 1 
HETATM 4 O O3B ADP . . . U 3 -11.324 33.819 17.881 1 179.81 ? O3B ADP 601 G 1 
HETATM 5 P PA ADP . . . U 3 -11.205 31.017 15.124 1 188.94 ? PA ADP 601 G 1 
HETATM 6 O O1A ADP . . . U 3 -11.654 31.164 13.692 1 179.99 ? O1A ADP 601 G 1 
HETATM 7 O O2A ADP . . . U 3 -9.768 30.663 15.423 1 195.31 ? O2A ADP 601 G 1 
HETATM 8 O O3A ADP . . . U 3 -11.681 32.301 15.99 1 175.66 ? O3A ADP 601 G 1 
HETATM 9 O O5' ADP . . . U 3 -12.079 29.811 15.736 1 183.96 ? O5' ADP 601 G 1 
HETATM 10 C C5' ADP . . . U 3 -12.007 28.541 15.092 1 186.15 ? C5' ADP 601 G 1 
HETATM 11 C C4' ADP . . . U 3 -12.156 27.392 16.078 1 191.27 ? C4' ADP 601 G 1 
HETATM 12 O O4' ADP . . . U 3 -13.528 27.007 16.21 1 193.3 ? O4' ADP 601 G 1 
HETATM 13 C C3' ADP . . . U 3 -11.396 26.178 15.567 1 200.12 ? C3' ADP 601 G 1 
HETATM 14 O O3' ADP . . . U 3 -10.415 25.781 16.529 1 209.89 ? O3' ADP 601 G 1 
HETATM 15 C C2' ADP . . . U 3 -12.429 25.082 15.412 1 206.92 ? C2' ADP 601 G 1 
HETATM 16 O O2' ADP . . . U 3 -11.944 23.85 15.953 1 212.95 ? O2' ADP 601 G 1 
HETATM 17 C C1' ADP . . . U 3 -13.632 25.58 16.193 1 206.95 ? C1' ADP 601 G 1 
HETATM 18 N N9 ADP . . . U 3 -14.888 25.132 15.543 1 219.61 ? N9 ADP 601 G 1 
HETATM 19 C C8 ADP . . . U 3 -15.801 25.911 14.934 1 214.04 ? C8 ADP 601 G 1 
HETATM 20 N N7 ADP . . . U 3 -16.833 25.168 14.454 1 217.03 ? N7 ADP 601 G 1 
HETATM 21 C C5 ADP . . . U 3 -16.582 23.882 14.763 1 223.54 ? C5 ADP 601 G 1 
HETATM 22 C C6 ADP . . . U 3 -17.255 22.578 14.558 1 224.36 ? C6 ADP 601 G 1 
HETATM 23 N N6 ADP . . . U 3 -18.438 22.5 13.908 1 218 ? N6 ADP 601 G 1 
HETATM 24 N N1 ADP . . . U 3 -16.65 21.469 15.041 1 227.94 ? N1 ADP 601 G 1 
HETATM 25 C C2 ADP . . . U 3 -15.474 21.532 15.691 1 223.33 ? C2 ADP 601 G 1 
HETATM 26 N N3 ADP . . . U 3 -14.808 22.678 15.912 1 228.35 ? N3 ADP 601 G 1 
HETATM 27 C C4 ADP . . . U 3 -15.301 23.865 15.483 1 226.62 ? C4 ADP 601 G 1 
#
_model_server_stats.io_time_ms              36 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    176 
_model_server_stats.query_time_ms           544 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           27 
#