data_8IHB # _model_server_result.job_id '_a8TJQK3bxSZxgc5SPQSow' _model_server_result.datetime_utc '2024-10-11 00:26:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ihb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":602}' # _entry.id 8IHB # _exptl.entry_id 8IHB _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 256.689 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 8-chloranyl-3-pentyl-7H-purine-2,6-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8IHB _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8IHB _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 147 R CYS 18 1_555 A SG CYS 312 R CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf2 A SG CYS 148 R CYS 19 1_555 A SG CYS 395 R CYS 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 229 R CYS 100 1_555 A SG CYS 306 R CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 A ND2 ASN 146 R ASN 17 1_555 F C1 NAG . R NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? # _chem_comp.formula 'C10 H13 Cl N4 O2' _chem_comp.formula_weight 256.689 _chem_comp.id OKL _chem_comp.mon_nstd_flag . _chem_comp.name 8-chloranyl-3-pentyl-7H-purine-2,6-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O08 C07 OKL doub 265 n n C01 C02 OKL sing 266 n n C07 N09 OKL sing 267 n n C07 N06 OKL sing 268 n n C02 C03 OKL sing 269 n n N09 C10 OKL sing 270 n n C05 N06 OKL sing 271 n n C05 C04 OKL sing 272 n n N06 C13 OKL sing 273 n n C10 O11 OKL doub 274 n n C10 C12 OKL sing 275 n n C03 C04 OKL sing 276 n n C13 C12 OKL doub 277 n y C13 N14 OKL sing 278 n y C12 N16 OKL sing 279 n y N14 C15 OKL doub 280 n y N16 C15 OKL sing 281 n y C15 CL17 OKL sing 282 n n C01 H1 OKL sing 283 n n C01 H2 OKL sing 284 n n C01 H3 OKL sing 285 n n C02 H4 OKL sing 286 n n C02 H5 OKL sing 287 n n C03 H6 OKL sing 288 n n C03 H7 OKL sing 289 n n C04 H8 OKL sing 290 n n C04 H9 OKL sing 291 n n C05 H10 OKL sing 292 n n C05 H11 OKL sing 293 n n N09 H12 OKL sing 294 n n N16 H14 OKL sing 295 n n # _atom_sites.entry_id 8IHB _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 NAG R 1 601 302 NAG NAG . G 7 OKL R 1 602 303 OKL GSK . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 OKL . . . G 7 127.014 112.26 88.19 1 73.63 ? C10 OKL 602 R 1 HETATM 2 C C12 OKL . . . G 7 128.009 112.997 87.544 1 73.83 ? C12 OKL 602 R 1 HETATM 3 C C13 OKL . . . G 7 128.622 112.534 86.42 1 75.46 ? C13 OKL 602 R 1 HETATM 4 C C15 OKL . . . G 7 129.446 114.436 86.771 1 81.42 ? C15 OKL 602 R 1 HETATM 5 C C01 OKL . . . G 7 131.101 108.199 87.905 1 76.88 ? C01 OKL 602 R 1 HETATM 6 C C02 OKL . . . G 7 131.422 109.191 86.836 1 78 ? C02 OKL 602 R 1 HETATM 7 C C03 OKL . . . G 7 130.371 109.203 85.762 1 80.98 ? C03 OKL 602 R 1 HETATM 8 C C04 OKL . . . G 7 130.341 110.428 84.89 1 78.11 ? C04 OKL 602 R 1 HETATM 9 C C05 OKL . . . G 7 128.914 110.863 84.636 1 79.97 ? C05 OKL 602 R 1 HETATM 10 C C07 OKL . . . G 7 127.301 110.54 86.445 1 77.27 ? C07 OKL 602 R 1 HETATM 11 N N06 OKL . . . G 7 128.276 111.321 85.864 1 74.72 ? N06 OKL 602 R 1 HETATM 12 N N09 OKL . . . G 7 126.728 111.055 87.579 1 74.71 ? N09 OKL 602 R 1 HETATM 13 N N14 OKL . . . G 7 129.526 113.429 85.95 1 82.95 ? N14 OKL 602 R 1 HETATM 14 N N16 OKL . . . G 7 128.536 114.235 87.793 1 77.08 ? N16 OKL 602 R 1 HETATM 15 O O08 OKL . . . G 7 126.979 109.464 85.99 1 77.63 ? O08 OKL 602 R 1 HETATM 16 O O11 OKL . . . G 7 126.407 112.6 89.194 1 77.22 ? O11 OKL 602 R 1 HETATM 17 CL CL17 OKL . . . G 7 130.296 115.911 86.604 1 83.33 ? CL17 OKL 602 R 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 17 #