data_8IHG # _model_server_result.job_id wru0uU514yX0vf00mjWo7A _model_server_result.datetime_utc '2024-11-24 17:45:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ihg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":502}' # _entry.id 8IHG # _exptl.entry_id 8IHG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8IHG _cell.length_a 153.475 _cell.length_b 153.475 _cell.length_c 312.036 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8IHG _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 14 A HIS 14 1_555 E ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? metalc ? metalc2 A NE2 HIS 63 A HIS 63 1_555 E ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc3 A OE2 GLU 252 A GLU 252 1_555 E ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc4 E ZN ZN . A ZN 901 1_555 F N 2AF . A 2AF 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? metalc ? metalc5 C NE2 HIS 14 C HIS 14 1_555 I ZN ZN . C ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc6 C NE2 HIS 63 C HIS 63 1_555 I ZN ZN . C ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc7 C OE2 GLU 252 C GLU 252 1_555 I ZN ZN . C ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc8 G N 2AF . C 2AF 501 1_555 I ZN ZN . C ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? metalc ? metalc9 G O 2AF . C 2AF 501 1_555 I ZN ZN . C ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 144 n n C1 C2 GOL sing 145 n n C1 H11 GOL sing 146 n n C1 H12 GOL sing 147 n n O1 HO1 GOL sing 148 n n C2 O2 GOL sing 149 n n C2 C3 GOL sing 150 n n C2 H2 GOL sing 151 n n O2 HO2 GOL sing 152 n n C3 O3 GOL sing 153 n n C3 H31 GOL sing 154 n n C3 H32 GOL sing 155 n n O3 HO3 GOL sing 156 n n # _atom_sites.entry_id 8IHG _atom_sites.fract_transf_matrix[1][1] 0.006516 _atom_sites.fract_transf_matrix[1][2] 0.003762 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007524 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003205 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ZN A 1 901 901 ZN ZN . F 4 2AF A 1 902 1001 2AF 2AF . G 4 2AF C 1 501 501 2AF 2AF . H 5 GOL C 1 502 601 GOL GOL . I 3 ZN C 1 503 701 ZN ZN . J 5 GOL C 1 504 801 GOL GOL . K 6 HOH A 1 1001 61 HOH HOH . K 6 HOH A 2 1002 41 HOH HOH . K 6 HOH A 3 1003 33 HOH HOH . K 6 HOH A 4 1004 6 HOH HOH . K 6 HOH A 5 1005 46 HOH HOH . K 6 HOH A 6 1006 17 HOH HOH . K 6 HOH A 7 1007 28 HOH HOH . K 6 HOH A 8 1008 11 HOH HOH . K 6 HOH A 9 1009 12 HOH HOH . K 6 HOH A 10 1010 2 HOH HOH . K 6 HOH A 11 1011 30 HOH HOH . K 6 HOH A 12 1012 5 HOH HOH . K 6 HOH A 13 1013 80 HOH HOH . K 6 HOH A 14 1014 95 HOH HOH . K 6 HOH A 15 1015 119 HOH HOH . K 6 HOH A 16 1016 90 HOH HOH . K 6 HOH A 17 1017 21 HOH HOH . K 6 HOH A 18 1018 88 HOH HOH . K 6 HOH A 19 1019 76 HOH HOH . K 6 HOH A 20 1020 29 HOH HOH . K 6 HOH A 21 1021 36 HOH HOH . K 6 HOH A 22 1022 13 HOH HOH . K 6 HOH A 23 1023 26 HOH HOH . K 6 HOH A 24 1024 70 HOH HOH . K 6 HOH A 25 1025 38 HOH HOH . K 6 HOH A 26 1026 74 HOH HOH . K 6 HOH A 27 1027 114 HOH HOH . K 6 HOH A 28 1028 113 HOH HOH . K 6 HOH A 29 1029 103 HOH HOH . K 6 HOH A 30 1030 112 HOH HOH . K 6 HOH A 31 1031 110 HOH HOH . K 6 HOH A 32 1032 108 HOH HOH . L 6 HOH B 1 301 79 HOH HOH . L 6 HOH B 2 302 59 HOH HOH . L 6 HOH B 3 303 71 HOH HOH . L 6 HOH B 4 304 78 HOH HOH . L 6 HOH B 5 305 81 HOH HOH . L 6 HOH B 6 306 3 HOH HOH . L 6 HOH B 7 307 31 HOH HOH . L 6 HOH B 8 308 77 HOH HOH . L 6 HOH B 9 309 52 HOH HOH . L 6 HOH B 10 310 40 HOH HOH . L 6 HOH B 11 311 25 HOH HOH . L 6 HOH B 12 312 16 HOH HOH . L 6 HOH B 13 313 55 HOH HOH . L 6 HOH B 14 314 19 HOH HOH . L 6 HOH B 15 315 67 HOH HOH . L 6 HOH B 16 316 50 HOH HOH . L 6 HOH B 17 317 83 HOH HOH . L 6 HOH B 18 318 66 HOH HOH . L 6 HOH B 19 319 45 HOH HOH . L 6 HOH B 20 320 117 HOH HOH . L 6 HOH B 21 321 72 HOH HOH . L 6 HOH B 22 322 109 HOH HOH . L 6 HOH B 23 323 111 HOH HOH . M 6 HOH C 1 601 120 HOH HOH . M 6 HOH C 2 602 32 HOH HOH . M 6 HOH C 3 603 9 HOH HOH . M 6 HOH C 4 604 8 HOH HOH . M 6 HOH C 5 605 53 HOH HOH . M 6 HOH C 6 606 7 HOH HOH . M 6 HOH C 7 607 10 HOH HOH . M 6 HOH C 8 608 56 HOH HOH . M 6 HOH C 9 609 54 HOH HOH . M 6 HOH C 10 610 34 HOH HOH . M 6 HOH C 11 611 87 HOH HOH . M 6 HOH C 12 612 24 HOH HOH . M 6 HOH C 13 613 20 HOH HOH . M 6 HOH C 14 614 116 HOH HOH . M 6 HOH C 15 615 18 HOH HOH . M 6 HOH C 16 616 14 HOH HOH . M 6 HOH C 17 617 86 HOH HOH . M 6 HOH C 18 618 68 HOH HOH . M 6 HOH C 19 619 27 HOH HOH . M 6 HOH C 20 620 106 HOH HOH . M 6 HOH C 21 621 101 HOH HOH . M 6 HOH C 22 622 65 HOH HOH . M 6 HOH C 23 623 15 HOH HOH . M 6 HOH C 24 624 49 HOH HOH . M 6 HOH C 25 625 85 HOH HOH . M 6 HOH C 26 626 105 HOH HOH . M 6 HOH C 27 627 102 HOH HOH . M 6 HOH C 28 628 84 HOH HOH . M 6 HOH C 29 629 107 HOH HOH . M 6 HOH C 30 630 99 HOH HOH . M 6 HOH C 31 631 100 HOH HOH . M 6 HOH C 32 632 75 HOH HOH . M 6 HOH C 33 633 104 HOH HOH . N 6 HOH D 1 301 92 HOH HOH . N 6 HOH D 2 302 94 HOH HOH . N 6 HOH D 3 303 93 HOH HOH . N 6 HOH D 4 304 118 HOH HOH . N 6 HOH D 5 305 44 HOH HOH . N 6 HOH D 6 306 91 HOH HOH . N 6 HOH D 7 307 43 HOH HOH . N 6 HOH D 8 308 60 HOH HOH . N 6 HOH D 9 309 42 HOH HOH . N 6 HOH D 10 310 39 HOH HOH . N 6 HOH D 11 311 48 HOH HOH . N 6 HOH D 12 312 22 HOH HOH . N 6 HOH D 13 313 89 HOH HOH . N 6 HOH D 14 314 51 HOH HOH . N 6 HOH D 15 315 1 HOH HOH . N 6 HOH D 16 316 37 HOH HOH . N 6 HOH D 17 317 57 HOH HOH . N 6 HOH D 18 318 35 HOH HOH . N 6 HOH D 19 319 97 HOH HOH . N 6 HOH D 20 320 115 HOH HOH . N 6 HOH D 21 321 96 HOH HOH . N 6 HOH D 22 322 98 HOH HOH . N 6 HOH D 23 323 64 HOH HOH . N 6 HOH D 24 324 63 HOH HOH . N 6 HOH D 25 325 121 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 5 48.56 21.341 -15.136 1 53.61 ? C1 GOL 502 C 1 HETATM 2 O O1 GOL . . . H 5 49.296 22.51 -15.145 1 47.15 ? O1 GOL 502 C 1 HETATM 3 C C2 GOL . . . H 5 48.623 20.718 -13.709 1 52.05 ? C2 GOL 502 C 1 HETATM 4 O O2 GOL . . . H 5 47.602 21.18 -12.826 1 35.07 ? O2 GOL 502 C 1 HETATM 5 C C3 GOL . . . H 5 48.6 19.161 -13.964 1 52.68 ? C3 GOL 502 C 1 HETATM 6 O O3 GOL . . . H 5 47.75 18.894 -15.035 1 52.38 ? O3 GOL 502 C 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 216 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #