data_8II3 # _model_server_result.job_id D30VwHPNwoMTOlTAKLXxfA _model_server_result.datetime_utc '2025-08-01 05:05:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ii3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 8II3 # _exptl.entry_id 8II3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 534.084 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[3,5-bis(iodanyl)-4-oxidanyl-phenyl]-(2-ethyl-6-oxidanyl-1-benzofuran-3-yl)methanone' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8II3 _cell.length_a 43.416 _cell.length_b 85.578 _cell.length_c 63.918 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8II3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C17 H12 I2 O4' _chem_comp.formula_weight 534.084 _chem_comp.id PKK _chem_comp.mon_nstd_flag . _chem_comp.name '[3,5-bis(iodanyl)-4-oxidanyl-phenyl]-(2-ethyl-6-oxidanyl-1-benzofuran-3-yl)methanone' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAW CAT PKK sing 241 n n CAT CAR PKK doub 242 n y CAT CAS PKK sing 243 n y CAR CAQ PKK sing 244 n y CAS CAE PKK doub 245 n y CAE CAD PKK sing 246 n y CAE OAB PKK sing 247 n y CAQ CAD PKK doub 248 n y CAD CAC PKK sing 249 n y OAB CAA PKK sing 250 n y CAC CAA PKK doub 251 n y CAC CAF PKK sing 252 n n CAA CAU PKK sing 253 n n CAV CAU PKK sing 254 n n OAM CAF PKK doub 255 n n CAF CAG PKK sing 256 n n CAG CAI PKK doub 257 n y CAG CAH PKK sing 258 n y CAI CAK PKK sing 259 n y CAH CAJ PKK doub 260 n y CAK IAP PKK sing 261 n n CAK CAL PKK doub 262 n y CAJ CAL PKK sing 263 n y CAJ IAN PKK sing 264 n n CAL OAO PKK sing 265 n n CAH H1 PKK sing 266 n n CAI H2 PKK sing 267 n n CAQ H3 PKK sing 268 n n CAR H4 PKK sing 269 n n CAS H5 PKK sing 270 n n CAU H6 PKK sing 271 n n CAU H7 PKK sing 272 n n CAV H8 PKK sing 273 n n CAV H9 PKK sing 274 n n CAV H10 PKK sing 275 n n OAO H11 PKK sing 276 n n OAW H12 PKK sing 277 n n # _atom_sites.entry_id 8II3 _atom_sites.fract_transf_matrix[1][1] 0.023033 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011685 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015645 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PKK A 1 201 201 PKK DRG . D 2 PKK B 1 201 201 PKK DRG . E 3 HOH A 1 301 20 HOH HOH . E 3 HOH A 2 302 84 HOH HOH . E 3 HOH A 3 303 41 HOH HOH . E 3 HOH A 4 304 143 HOH HOH . E 3 HOH A 5 305 32 HOH HOH . E 3 HOH A 6 306 100 HOH HOH . E 3 HOH A 7 307 66 HOH HOH . E 3 HOH A 8 308 17 HOH HOH . E 3 HOH A 9 309 42 HOH HOH . E 3 HOH A 10 310 144 HOH HOH . E 3 HOH A 11 311 11 HOH HOH . E 3 HOH A 12 312 82 HOH HOH . E 3 HOH A 13 313 166 HOH HOH . E 3 HOH A 14 314 48 HOH HOH . E 3 HOH A 15 315 30 HOH HOH . E 3 HOH A 16 316 62 HOH HOH . E 3 HOH A 17 317 9 HOH HOH . E 3 HOH A 18 318 2 HOH HOH . E 3 HOH A 19 319 156 HOH HOH . E 3 HOH A 20 320 28 HOH HOH . E 3 HOH A 21 321 19 HOH HOH . E 3 HOH A 22 322 98 HOH HOH . E 3 HOH A 23 323 13 HOH HOH . E 3 HOH A 24 324 45 HOH HOH . E 3 HOH A 25 325 102 HOH HOH . E 3 HOH A 26 326 164 HOH HOH . E 3 HOH A 27 327 56 HOH HOH . E 3 HOH A 28 328 46 HOH HOH . E 3 HOH A 29 329 116 HOH HOH . E 3 HOH A 30 330 83 HOH HOH . E 3 HOH A 31 331 3 HOH HOH . E 3 HOH A 32 332 142 HOH HOH . E 3 HOH A 33 333 59 HOH HOH . E 3 HOH A 34 334 65 HOH HOH . E 3 HOH A 35 335 36 HOH HOH . E 3 HOH A 36 336 24 HOH HOH . E 3 HOH A 37 337 129 HOH HOH . E 3 HOH A 38 338 76 HOH HOH . E 3 HOH A 39 339 7 HOH HOH . E 3 HOH A 40 340 52 HOH HOH . E 3 HOH A 41 341 6 HOH HOH . E 3 HOH A 42 342 103 HOH HOH . E 3 HOH A 43 343 80 HOH HOH . E 3 HOH A 44 344 38 HOH HOH . E 3 HOH A 45 345 31 HOH HOH . E 3 HOH A 46 346 113 HOH HOH . E 3 HOH A 47 347 22 HOH HOH . E 3 HOH A 48 348 159 HOH HOH . E 3 HOH A 49 349 21 HOH HOH . E 3 HOH A 50 350 94 HOH HOH . E 3 HOH A 51 351 60 HOH HOH . E 3 HOH A 52 352 49 HOH HOH . E 3 HOH A 53 353 23 HOH HOH . E 3 HOH A 54 354 150 HOH HOH . E 3 HOH A 55 355 68 HOH HOH . E 3 HOH A 56 356 108 HOH HOH . E 3 HOH A 57 357 44 HOH HOH . E 3 HOH A 58 358 169 HOH HOH . E 3 HOH A 59 359 109 HOH HOH . E 3 HOH A 60 360 67 HOH HOH . E 3 HOH A 61 361 95 HOH HOH . E 3 HOH A 62 362 71 HOH HOH . E 3 HOH A 63 363 123 HOH HOH . E 3 HOH A 64 364 53 HOH HOH . E 3 HOH A 65 365 87 HOH HOH . E 3 HOH A 66 366 69 HOH HOH . E 3 HOH A 67 367 15 HOH HOH . E 3 HOH A 68 368 34 HOH HOH . E 3 HOH A 69 369 126 HOH HOH . E 3 HOH A 70 370 163 HOH HOH . E 3 HOH A 71 371 118 HOH HOH . E 3 HOH A 72 372 115 HOH HOH . E 3 HOH A 73 373 81 HOH HOH . E 3 HOH A 74 374 125 HOH HOH . E 3 HOH A 75 375 149 HOH HOH . E 3 HOH A 76 376 154 HOH HOH . E 3 HOH A 77 377 173 HOH HOH . E 3 HOH A 78 378 114 HOH HOH . E 3 HOH A 79 379 29 HOH HOH . E 3 HOH A 80 380 63 HOH HOH . E 3 HOH A 81 381 139 HOH HOH . E 3 HOH A 82 382 43 HOH HOH . E 3 HOH A 83 383 106 HOH HOH . E 3 HOH A 84 384 146 HOH HOH . E 3 HOH A 85 385 79 HOH HOH . E 3 HOH A 86 386 72 HOH HOH . E 3 HOH A 87 387 155 HOH HOH . E 3 HOH A 88 388 130 HOH HOH . E 3 HOH A 89 389 137 HOH HOH . E 3 HOH A 90 390 112 HOH HOH . E 3 HOH A 91 391 145 HOH HOH . E 3 HOH A 92 392 132 HOH HOH . E 3 HOH A 93 393 75 HOH HOH . F 3 HOH B 1 301 140 HOH HOH . F 3 HOH B 2 302 121 HOH HOH . F 3 HOH B 3 303 167 HOH HOH . F 3 HOH B 4 304 58 HOH HOH . F 3 HOH B 5 305 27 HOH HOH . F 3 HOH B 6 306 89 HOH HOH . F 3 HOH B 7 307 162 HOH HOH . F 3 HOH B 8 308 57 HOH HOH . F 3 HOH B 9 309 73 HOH HOH . F 3 HOH B 10 310 14 HOH HOH . F 3 HOH B 11 311 161 HOH HOH . F 3 HOH B 12 312 133 HOH HOH . F 3 HOH B 13 313 88 HOH HOH . F 3 HOH B 14 314 152 HOH HOH . F 3 HOH B 15 315 168 HOH HOH . F 3 HOH B 16 316 26 HOH HOH . F 3 HOH B 17 317 77 HOH HOH . F 3 HOH B 18 318 39 HOH HOH . F 3 HOH B 19 319 4 HOH HOH . F 3 HOH B 20 320 74 HOH HOH . F 3 HOH B 21 321 93 HOH HOH . F 3 HOH B 22 322 157 HOH HOH . F 3 HOH B 23 323 54 HOH HOH . F 3 HOH B 24 324 1 HOH HOH . F 3 HOH B 25 325 10 HOH HOH . F 3 HOH B 26 326 8 HOH HOH . F 3 HOH B 27 327 33 HOH HOH . F 3 HOH B 28 328 64 HOH HOH . F 3 HOH B 29 329 50 HOH HOH . F 3 HOH B 30 330 128 HOH HOH . F 3 HOH B 31 331 5 HOH HOH . F 3 HOH B 32 332 40 HOH HOH . F 3 HOH B 33 333 61 HOH HOH . F 3 HOH B 34 334 85 HOH HOH . F 3 HOH B 35 335 124 HOH HOH . F 3 HOH B 36 336 47 HOH HOH . F 3 HOH B 37 337 151 HOH HOH . F 3 HOH B 38 338 12 HOH HOH . F 3 HOH B 39 339 107 HOH HOH . F 3 HOH B 40 340 141 HOH HOH . F 3 HOH B 41 341 101 HOH HOH . F 3 HOH B 42 342 86 HOH HOH . F 3 HOH B 43 343 51 HOH HOH . F 3 HOH B 44 344 172 HOH HOH . F 3 HOH B 45 345 25 HOH HOH . F 3 HOH B 46 346 97 HOH HOH . F 3 HOH B 47 347 165 HOH HOH . F 3 HOH B 48 348 37 HOH HOH . F 3 HOH B 49 349 96 HOH HOH . F 3 HOH B 50 350 35 HOH HOH . F 3 HOH B 51 351 99 HOH HOH . F 3 HOH B 52 352 18 HOH HOH . F 3 HOH B 53 353 92 HOH HOH . F 3 HOH B 54 354 171 HOH HOH . F 3 HOH B 55 355 55 HOH HOH . F 3 HOH B 56 356 170 HOH HOH . F 3 HOH B 57 357 175 HOH HOH . F 3 HOH B 58 358 148 HOH HOH . F 3 HOH B 59 359 78 HOH HOH . F 3 HOH B 60 360 104 HOH HOH . F 3 HOH B 61 361 147 HOH HOH . F 3 HOH B 62 362 16 HOH HOH . F 3 HOH B 63 363 120 HOH HOH . F 3 HOH B 64 364 153 HOH HOH . F 3 HOH B 65 365 127 HOH HOH . F 3 HOH B 66 366 158 HOH HOH . F 3 HOH B 67 367 70 HOH HOH . F 3 HOH B 68 368 110 HOH HOH . F 3 HOH B 69 369 136 HOH HOH . F 3 HOH B 70 370 122 HOH HOH . F 3 HOH B 71 371 105 HOH HOH . F 3 HOH B 72 372 138 HOH HOH . F 3 HOH B 73 373 91 HOH HOH . F 3 HOH B 74 374 134 HOH HOH . F 3 HOH B 75 375 90 HOH HOH . F 3 HOH B 76 376 117 HOH HOH . F 3 HOH B 77 377 160 HOH HOH . F 3 HOH B 78 378 111 HOH HOH . F 3 HOH B 79 379 131 HOH HOH . F 3 HOH B 80 380 174 HOH HOH . F 3 HOH B 81 381 135 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA PKK . . . C 2 -20.697 1.318 -7.064 0.5 23.42 ? CAA PKK 201 A 1 HETATM 2 C CAC PKK . . . C 2 -20.791 -0.027 -7.073 0.5 22.86 ? CAC PKK 201 A 1 HETATM 3 C CAD PKK . . . C 2 -21.135 -0.359 -8.334 0.5 22.76 ? CAD PKK 201 A 1 HETATM 4 C CAE PKK . . . C 2 -21.26 0.786 -9.019 0.5 20.03 ? CAE PKK 201 A 1 HETATM 5 C CAF PKK . . . C 2 -20.539 -0.905 -6.064 0.5 21.66 ? CAF PKK 201 A 1 HETATM 6 C CAG PKK . . . C 2 -20.916 -0.642 -4.74 0.5 24.67 ? CAG PKK 201 A 1 HETATM 7 C CAH PKK . . . C 2 -20.181 -1.253 -3.719 0.5 33.2 ? CAH PKK 201 A 1 HETATM 8 C CAI PKK . . . C 2 -21.98 0.186 -4.393 0.5 27.58 ? CAI PKK 201 A 1 HETATM 9 C CAJ PKK . . . C 2 -20.467 -1.041 -2.359 0.5 32.39 ? CAJ PKK 201 A 1 HETATM 10 C CAK PKK . . . C 2 -22.292 0.437 -3.07 0.5 26.57 ? CAK PKK 201 A 1 HETATM 11 C CAL PKK . . . C 2 -21.532 -0.178 -2.071 0.5 26.9 ? CAL PKK 201 A 1 HETATM 12 C CAQ PKK . . . C 2 -21.374 -1.514 -8.963 0.5 24.35 ? CAQ PKK 201 A 1 HETATM 13 C CAR PKK . . . C 2 -21.734 -1.538 -10.309 0.5 20.83 ? CAR PKK 201 A 1 HETATM 14 C CAS PKK . . . C 2 -21.598 0.833 -10.303 0.5 22.36 ? CAS PKK 201 A 1 HETATM 15 C CAT PKK . . . C 2 -21.849 -0.333 -10.995 0.5 21.23 ? CAT PKK 201 A 1 HETATM 16 C CAU PKK . . . C 2 -20.305 2.283 -5.934 0.5 20.45 ? CAU PKK 201 A 1 HETATM 17 C CAV PKK . . . C 2 -19.402 3.34 -6.531 0.5 23.55 ? CAV PKK 201 A 1 HETATM 18 I IAN PKK . . . C 2 -19.264 -2.012 -0.854 0.5 44.08 ? IAN PKK 201 A 1 HETATM 19 I IAP PKK . . . C 2 -23.914 1.757 -2.657 0.5 36.67 ? IAP PKK 201 A 1 HETATM 20 O OAB PKK . . . C 2 -20.99 1.772 -8.219 0.5 22.05 ? OAB PKK 201 A 1 HETATM 21 O OAM PKK . . . C 2 -19.81 -1.874 -6.262 0.5 23.69 ? OAM PKK 201 A 1 HETATM 22 O OAO PKK . . . C 2 -21.857 0.061 -0.772 0.5 36.88 ? OAO PKK 201 A 1 HETATM 23 O OAW PKK . . . C 2 -22.198 -0.265 -12.314 0.5 25.64 ? OAW PKK 201 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 23 #