data_8IIG # _model_server_result.job_id mBxNtpLMV4dD5ucDmdOSxg _model_server_result.datetime_utc '2025-01-25 10:52:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8iig # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 8IIG # _exptl.entry_id 8IIG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.087 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description URACIL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.5 _cell.angle_gamma 90 _cell.entry_id 8IIG _cell.length_a 36.71 _cell.length_b 50.72 _cell.length_c 55.06 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8IIG _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 23 A CYS 24 1_555 B FE3 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc2 A SG CYS 26 A CYS 27 1_555 B FE2 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.645 ? metalc ? metalc3 A ND1 HIS 94 A HIS 95 1_555 B FE4 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? # _chem_comp.formula 'C4 H4 N2 O2' _chem_comp.formula_weight 112.087 _chem_comp.id URA _chem_comp.mon_nstd_flag . _chem_comp.name URACIL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 URA sing 370 n n N1 C6 URA sing 371 n n N1 HN1 URA sing 372 n n C2 O2 URA doub 373 n n C2 N3 URA sing 374 n n N3 C4 URA sing 375 n n N3 HN3 URA sing 376 n n C4 O4 URA doub 377 n n C4 C5 URA sing 378 n n C5 C6 URA doub 379 n n C5 H5 URA sing 380 n n C6 H6 URA sing 381 n n # _atom_sites.entry_id 8IIG _atom_sites.fract_transf_matrix[1][1] 0.027241 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007045 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019716 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01876 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SF4 A 1 301 301 SF4 SF4 . C 3 URA A 1 302 302 URA URA . D 4 HOH A 1 401 1 HOH HOH . D 4 HOH A 2 402 23 HOH HOH . D 4 HOH A 3 403 3 HOH HOH . D 4 HOH A 4 404 2 HOH HOH . D 4 HOH A 5 405 6 HOH HOH . D 4 HOH A 6 406 24 HOH HOH . D 4 HOH A 7 407 35 HOH HOH . D 4 HOH A 8 408 14 HOH HOH . D 4 HOH A 9 409 4 HOH HOH . D 4 HOH A 10 410 9 HOH HOH . D 4 HOH A 11 411 18 HOH HOH . D 4 HOH A 12 412 13 HOH HOH . D 4 HOH A 13 413 25 HOH HOH . D 4 HOH A 14 414 12 HOH HOH . D 4 HOH A 15 415 8 HOH HOH . D 4 HOH A 16 416 66 HOH HOH . D 4 HOH A 17 417 7 HOH HOH . D 4 HOH A 18 418 58 HOH HOH . D 4 HOH A 19 419 31 HOH HOH . D 4 HOH A 20 420 15 HOH HOH . D 4 HOH A 21 421 34 HOH HOH . D 4 HOH A 22 422 19 HOH HOH . D 4 HOH A 23 423 11 HOH HOH . D 4 HOH A 24 424 27 HOH HOH . D 4 HOH A 25 425 32 HOH HOH . D 4 HOH A 26 426 20 HOH HOH . D 4 HOH A 27 427 36 HOH HOH . D 4 HOH A 28 428 26 HOH HOH . D 4 HOH A 29 429 33 HOH HOH . D 4 HOH A 30 430 10 HOH HOH . D 4 HOH A 31 431 29 HOH HOH . D 4 HOH A 32 432 28 HOH HOH . D 4 HOH A 33 433 62 HOH HOH . D 4 HOH A 34 434 64 HOH HOH . D 4 HOH A 35 435 42 HOH HOH . D 4 HOH A 36 436 30 HOH HOH . D 4 HOH A 37 437 63 HOH HOH . D 4 HOH A 38 438 16 HOH HOH . D 4 HOH A 39 439 48 HOH HOH . D 4 HOH A 40 440 61 HOH HOH . D 4 HOH A 41 441 60 HOH HOH . D 4 HOH A 42 442 21 HOH HOH . D 4 HOH A 43 443 65 HOH HOH . D 4 HOH A 44 444 5 HOH HOH . D 4 HOH A 45 445 59 HOH HOH . D 4 HOH A 46 446 49 HOH HOH . D 4 HOH A 47 447 17 HOH HOH . D 4 HOH A 48 448 57 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 URA . . . C 3 3.422 -6.557 20.379 1 15.64 ? N1 URA 302 A 1 HETATM 2 C C2 URA . . . C 3 2.663 -6.768 19.267 1 15.87 ? C2 URA 302 A 1 HETATM 3 O O2 URA . . . C 3 3.044 -7.456 18.321 1 14.02 ? O2 URA 302 A 1 HETATM 4 N N3 URA . . . C 3 1.436 -6.157 19.273 1 14.07 ? N3 URA 302 A 1 HETATM 5 C C4 URA . . . C 3 0.927 -5.371 20.291 1 13.65 ? C4 URA 302 A 1 HETATM 6 O O4 URA . . . C 3 -0.201 -4.87 20.169 1 14.26 ? O4 URA 302 A 1 HETATM 7 C C5 URA . . . C 3 1.794 -5.199 21.422 1 13.79 ? C5 URA 302 A 1 HETATM 8 C C6 URA . . . C 3 3.001 -5.798 21.423 1 15.09 ? C6 URA 302 A 1 # _model_server_stats.io_time_ms 85 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 8 #