data_8III # _model_server_result.job_id LGnaAcfsVH3cn0FSq6RBbQ _model_server_result.datetime_utc '2024-12-02 23:21:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8iii # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 8III # _exptl.entry_id 8III _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.64 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IRON/SULFUR CLUSTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.72 _cell.angle_gamma 90 _cell.entry_id 8III _cell.length_a 36.48 _cell.length_b 51.37 _cell.length_c 54.99 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8III _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 22 A CYS 24 1_555 B FE3 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc2 A SG CYS 25 A CYS 27 1_555 B FE2 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc3 A ND1 HIS 93 A HIS 95 1_555 B FE4 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc4 A SG CYS 118 A CYS 120 1_555 B FE1 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? # _chem_comp.formula 'Fe4 S4' _chem_comp.formula_weight 351.64 _chem_comp.id SF4 _chem_comp.mon_nstd_flag . _chem_comp.name 'IRON/SULFUR CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S2 SF4 sing 303 n n FE1 S3 SF4 sing 304 n n FE1 S4 SF4 sing 305 n n FE2 S1 SF4 sing 306 n n FE2 S3 SF4 sing 307 n n FE2 S4 SF4 sing 308 n n FE3 S1 SF4 sing 309 n n FE3 S2 SF4 sing 310 n n FE3 S4 SF4 sing 311 n n FE4 S1 SF4 sing 312 n n FE4 S2 SF4 sing 313 n n FE4 S3 SF4 sing 314 n n # _atom_sites.entry_id 8III _atom_sites.fract_transf_matrix[1][1] 0.027412 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007202 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019467 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018802 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SF4 A 1 301 301 SF4 SF4 . C 3 URA A 1 302 302 URA URA . D 4 GOL A 1 303 303 GOL GOL . E 5 HOH A 1 401 57 HOH HOH . E 5 HOH A 2 402 28 HOH HOH . E 5 HOH A 3 403 20 HOH HOH . E 5 HOH A 4 404 61 HOH HOH . E 5 HOH A 5 405 68 HOH HOH . E 5 HOH A 6 406 75 HOH HOH . E 5 HOH A 7 407 21 HOH HOH . E 5 HOH A 8 408 45 HOH HOH . E 5 HOH A 9 409 121 HOH HOH . E 5 HOH A 10 410 107 HOH HOH . E 5 HOH A 11 411 37 HOH HOH . E 5 HOH A 12 412 25 HOH HOH . E 5 HOH A 13 413 106 HOH HOH . E 5 HOH A 14 414 86 HOH HOH . E 5 HOH A 15 415 76 HOH HOH . E 5 HOH A 16 416 5 HOH HOH . E 5 HOH A 17 417 55 HOH HOH . E 5 HOH A 18 418 99 HOH HOH . E 5 HOH A 19 419 91 HOH HOH . E 5 HOH A 20 420 110 HOH HOH . E 5 HOH A 21 421 152 HOH HOH . E 5 HOH A 22 422 34 HOH HOH . E 5 HOH A 23 423 19 HOH HOH . E 5 HOH A 24 424 118 HOH HOH . E 5 HOH A 25 425 90 HOH HOH . E 5 HOH A 26 426 71 HOH HOH . E 5 HOH A 27 427 154 HOH HOH . E 5 HOH A 28 428 119 HOH HOH . E 5 HOH A 29 429 93 HOH HOH . E 5 HOH A 30 430 36 HOH HOH . E 5 HOH A 31 431 120 HOH HOH . E 5 HOH A 32 432 56 HOH HOH . E 5 HOH A 33 433 59 HOH HOH . E 5 HOH A 34 434 26 HOH HOH . E 5 HOH A 35 435 67 HOH HOH . E 5 HOH A 36 436 89 HOH HOH . E 5 HOH A 37 437 11 HOH HOH . E 5 HOH A 38 438 2 HOH HOH . E 5 HOH A 39 439 74 HOH HOH . E 5 HOH A 40 440 124 HOH HOH . E 5 HOH A 41 441 58 HOH HOH . E 5 HOH A 42 442 88 HOH HOH . E 5 HOH A 43 443 116 HOH HOH . E 5 HOH A 44 444 47 HOH HOH . E 5 HOH A 45 445 3 HOH HOH . E 5 HOH A 46 446 48 HOH HOH . E 5 HOH A 47 447 33 HOH HOH . E 5 HOH A 48 448 83 HOH HOH . E 5 HOH A 49 449 98 HOH HOH . E 5 HOH A 50 450 72 HOH HOH . E 5 HOH A 51 451 65 HOH HOH . E 5 HOH A 52 452 79 HOH HOH . E 5 HOH A 53 453 18 HOH HOH . E 5 HOH A 54 454 60 HOH HOH . E 5 HOH A 55 455 78 HOH HOH . E 5 HOH A 56 456 43 HOH HOH . E 5 HOH A 57 457 64 HOH HOH . E 5 HOH A 58 458 101 HOH HOH . E 5 HOH A 59 459 12 HOH HOH . E 5 HOH A 60 460 4 HOH HOH . E 5 HOH A 61 461 16 HOH HOH . E 5 HOH A 62 462 22 HOH HOH . E 5 HOH A 63 463 66 HOH HOH . E 5 HOH A 64 464 23 HOH HOH . E 5 HOH A 65 465 108 HOH HOH . E 5 HOH A 66 466 13 HOH HOH . E 5 HOH A 67 467 102 HOH HOH . E 5 HOH A 68 468 24 HOH HOH . E 5 HOH A 69 469 7 HOH HOH . E 5 HOH A 70 470 103 HOH HOH . E 5 HOH A 71 471 69 HOH HOH . E 5 HOH A 72 472 82 HOH HOH . E 5 HOH A 73 473 51 HOH HOH . E 5 HOH A 74 474 49 HOH HOH . E 5 HOH A 75 475 31 HOH HOH . E 5 HOH A 76 476 104 HOH HOH . E 5 HOH A 77 477 73 HOH HOH . E 5 HOH A 78 478 42 HOH HOH . E 5 HOH A 79 479 29 HOH HOH . E 5 HOH A 80 480 80 HOH HOH . E 5 HOH A 81 481 10 HOH HOH . E 5 HOH A 82 482 38 HOH HOH . E 5 HOH A 83 483 97 HOH HOH . E 5 HOH A 84 484 62 HOH HOH . E 5 HOH A 85 485 85 HOH HOH . E 5 HOH A 86 486 30 HOH HOH . E 5 HOH A 87 487 95 HOH HOH . E 5 HOH A 88 488 77 HOH HOH . E 5 HOH A 89 489 50 HOH HOH . E 5 HOH A 90 490 111 HOH HOH . E 5 HOH A 91 491 144 HOH HOH . E 5 HOH A 92 492 32 HOH HOH . E 5 HOH A 93 493 27 HOH HOH . E 5 HOH A 94 494 9 HOH HOH . E 5 HOH A 95 495 35 HOH HOH . E 5 HOH A 96 496 46 HOH HOH . E 5 HOH A 97 497 53 HOH HOH . E 5 HOH A 98 498 15 HOH HOH . E 5 HOH A 99 499 17 HOH HOH . E 5 HOH A 100 500 44 HOH HOH . E 5 HOH A 101 501 6 HOH HOH . E 5 HOH A 102 502 39 HOH HOH . E 5 HOH A 103 503 84 HOH HOH . E 5 HOH A 104 504 63 HOH HOH . E 5 HOH A 105 505 8 HOH HOH . E 5 HOH A 106 506 14 HOH HOH . E 5 HOH A 107 507 109 HOH HOH . E 5 HOH A 108 508 105 HOH HOH . E 5 HOH A 109 509 147 HOH HOH . E 5 HOH A 110 510 150 HOH HOH . E 5 HOH A 111 511 136 HOH HOH . E 5 HOH A 112 512 1 HOH HOH . E 5 HOH A 113 513 52 HOH HOH . E 5 HOH A 114 514 153 HOH HOH . E 5 HOH A 115 515 151 HOH HOH . E 5 HOH A 116 516 123 HOH HOH . E 5 HOH A 117 517 92 HOH HOH . E 5 HOH A 118 518 122 HOH HOH . E 5 HOH A 119 519 40 HOH HOH . E 5 HOH A 120 520 81 HOH HOH . E 5 HOH A 121 521 148 HOH HOH . E 5 HOH A 122 522 100 HOH HOH . E 5 HOH A 123 523 145 HOH HOH . E 5 HOH A 124 524 94 HOH HOH . E 5 HOH A 125 525 155 HOH HOH . E 5 HOH A 126 526 156 HOH HOH . E 5 HOH A 127 527 117 HOH HOH . E 5 HOH A 128 528 149 HOH HOH . E 5 HOH A 129 529 70 HOH HOH . E 5 HOH A 130 530 129 HOH HOH . E 5 HOH A 131 531 131 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 SF4 . . . B 2 -9.991 0.41 -18.675 1 11.85 ? FE1 SF4 301 A 1 HETATM 2 FE FE2 SF4 . . . B 2 -9.172 3.041 -18.665 1 12.23 ? FE2 SF4 301 A 1 HETATM 3 FE FE3 SF4 . . . B 2 -8.688 1.429 -20.811 1 11.2 ? FE3 SF4 301 A 1 HETATM 4 FE FE4 SF4 . . . B 2 -7.392 1.052 -18.469 1 12.43 ? FE4 SF4 301 A 1 HETATM 5 S S1 SF4 . . . B 2 -7.252 2.907 -19.861 1 11.52 ? S1 SF4 301 A 1 HETATM 6 S S2 SF4 . . . B 2 -8.272 -0.603 -19.76 1 9.52 ? S2 SF4 301 A 1 HETATM 7 S S3 SF4 . . . B 2 -8.999 1.517 -16.919 1 10.41 ? S3 SF4 301 A 1 HETATM 8 S S4 SF4 . . . B 2 -10.688 2.117 -20.078 1 11.43 ? S4 SF4 301 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 8 #