data_8III
#
_model_server_result.job_id            HNqjbUeczGjg5LxO4WeLfQ 
_model_server_result.datetime_utc      '2024-12-02 23:50:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8iii 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":302}' 
#
_entry.id    8III 
#
_exptl.entry_id    8III 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              112.087 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            URACIL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          104.72 
_cell.angle_gamma         90 
_cell.entry_id            8III 
_cell.length_a            36.48 
_cell.length_b            51.37 
_cell.length_c            54.99 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8III 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 22 A CYS 24 1_555 B FE3 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? 
metalc ? metalc2 A SG CYS 25 A CYS 27 1_555 B FE2 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? 
metalc ? metalc3 A ND1 HIS 93 A HIS 95 1_555 B FE4 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? 
metalc ? metalc4 A SG CYS 118 A CYS 120 1_555 B FE1 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
#
_chem_comp.formula           'C4 H4 N2 O2' 
_chem_comp.formula_weight    112.087 
_chem_comp.id                URA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              URACIL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 URA sing 383 n n 
N1 C6 URA sing 384 n n 
N1 HN1 URA sing 385 n n 
C2 O2 URA doub 386 n n 
C2 N3 URA sing 387 n n 
N3 C4 URA sing 388 n n 
N3 HN3 URA sing 389 n n 
C4 O4 URA doub 390 n n 
C4 C5 URA sing 391 n n 
C5 C6 URA doub 392 n n 
C5 H5 URA sing 393 n n 
C6 H6 URA sing 394 n n 
#
_atom_sites.entry_id                     8III 
_atom_sites.fract_transf_matrix[1][1]    0.027412 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.007202 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019467 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018802 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SF4 A 1 301 301 SF4 SF4 . 
C 3 URA A 1 302 302 URA URA . 
D 4 GOL A 1 303 303 GOL GOL . 
E 5 HOH A 1 401 57 HOH HOH . 
E 5 HOH A 2 402 28 HOH HOH . 
E 5 HOH A 3 403 20 HOH HOH . 
E 5 HOH A 4 404 61 HOH HOH . 
E 5 HOH A 5 405 68 HOH HOH . 
E 5 HOH A 6 406 75 HOH HOH . 
E 5 HOH A 7 407 21 HOH HOH . 
E 5 HOH A 8 408 45 HOH HOH . 
E 5 HOH A 9 409 121 HOH HOH . 
E 5 HOH A 10 410 107 HOH HOH . 
E 5 HOH A 11 411 37 HOH HOH . 
E 5 HOH A 12 412 25 HOH HOH . 
E 5 HOH A 13 413 106 HOH HOH . 
E 5 HOH A 14 414 86 HOH HOH . 
E 5 HOH A 15 415 76 HOH HOH . 
E 5 HOH A 16 416 5 HOH HOH . 
E 5 HOH A 17 417 55 HOH HOH . 
E 5 HOH A 18 418 99 HOH HOH . 
E 5 HOH A 19 419 91 HOH HOH . 
E 5 HOH A 20 420 110 HOH HOH . 
E 5 HOH A 21 421 152 HOH HOH . 
E 5 HOH A 22 422 34 HOH HOH . 
E 5 HOH A 23 423 19 HOH HOH . 
E 5 HOH A 24 424 118 HOH HOH . 
E 5 HOH A 25 425 90 HOH HOH . 
E 5 HOH A 26 426 71 HOH HOH . 
E 5 HOH A 27 427 154 HOH HOH . 
E 5 HOH A 28 428 119 HOH HOH . 
E 5 HOH A 29 429 93 HOH HOH . 
E 5 HOH A 30 430 36 HOH HOH . 
E 5 HOH A 31 431 120 HOH HOH . 
E 5 HOH A 32 432 56 HOH HOH . 
E 5 HOH A 33 433 59 HOH HOH . 
E 5 HOH A 34 434 26 HOH HOH . 
E 5 HOH A 35 435 67 HOH HOH . 
E 5 HOH A 36 436 89 HOH HOH . 
E 5 HOH A 37 437 11 HOH HOH . 
E 5 HOH A 38 438 2 HOH HOH . 
E 5 HOH A 39 439 74 HOH HOH . 
E 5 HOH A 40 440 124 HOH HOH . 
E 5 HOH A 41 441 58 HOH HOH . 
E 5 HOH A 42 442 88 HOH HOH . 
E 5 HOH A 43 443 116 HOH HOH . 
E 5 HOH A 44 444 47 HOH HOH . 
E 5 HOH A 45 445 3 HOH HOH . 
E 5 HOH A 46 446 48 HOH HOH . 
E 5 HOH A 47 447 33 HOH HOH . 
E 5 HOH A 48 448 83 HOH HOH . 
E 5 HOH A 49 449 98 HOH HOH . 
E 5 HOH A 50 450 72 HOH HOH . 
E 5 HOH A 51 451 65 HOH HOH . 
E 5 HOH A 52 452 79 HOH HOH . 
E 5 HOH A 53 453 18 HOH HOH . 
E 5 HOH A 54 454 60 HOH HOH . 
E 5 HOH A 55 455 78 HOH HOH . 
E 5 HOH A 56 456 43 HOH HOH . 
E 5 HOH A 57 457 64 HOH HOH . 
E 5 HOH A 58 458 101 HOH HOH . 
E 5 HOH A 59 459 12 HOH HOH . 
E 5 HOH A 60 460 4 HOH HOH . 
E 5 HOH A 61 461 16 HOH HOH . 
E 5 HOH A 62 462 22 HOH HOH . 
E 5 HOH A 63 463 66 HOH HOH . 
E 5 HOH A 64 464 23 HOH HOH . 
E 5 HOH A 65 465 108 HOH HOH . 
E 5 HOH A 66 466 13 HOH HOH . 
E 5 HOH A 67 467 102 HOH HOH . 
E 5 HOH A 68 468 24 HOH HOH . 
E 5 HOH A 69 469 7 HOH HOH . 
E 5 HOH A 70 470 103 HOH HOH . 
E 5 HOH A 71 471 69 HOH HOH . 
E 5 HOH A 72 472 82 HOH HOH . 
E 5 HOH A 73 473 51 HOH HOH . 
E 5 HOH A 74 474 49 HOH HOH . 
E 5 HOH A 75 475 31 HOH HOH . 
E 5 HOH A 76 476 104 HOH HOH . 
E 5 HOH A 77 477 73 HOH HOH . 
E 5 HOH A 78 478 42 HOH HOH . 
E 5 HOH A 79 479 29 HOH HOH . 
E 5 HOH A 80 480 80 HOH HOH . 
E 5 HOH A 81 481 10 HOH HOH . 
E 5 HOH A 82 482 38 HOH HOH . 
E 5 HOH A 83 483 97 HOH HOH . 
E 5 HOH A 84 484 62 HOH HOH . 
E 5 HOH A 85 485 85 HOH HOH . 
E 5 HOH A 86 486 30 HOH HOH . 
E 5 HOH A 87 487 95 HOH HOH . 
E 5 HOH A 88 488 77 HOH HOH . 
E 5 HOH A 89 489 50 HOH HOH . 
E 5 HOH A 90 490 111 HOH HOH . 
E 5 HOH A 91 491 144 HOH HOH . 
E 5 HOH A 92 492 32 HOH HOH . 
E 5 HOH A 93 493 27 HOH HOH . 
E 5 HOH A 94 494 9 HOH HOH . 
E 5 HOH A 95 495 35 HOH HOH . 
E 5 HOH A 96 496 46 HOH HOH . 
E 5 HOH A 97 497 53 HOH HOH . 
E 5 HOH A 98 498 15 HOH HOH . 
E 5 HOH A 99 499 17 HOH HOH . 
E 5 HOH A 100 500 44 HOH HOH . 
E 5 HOH A 101 501 6 HOH HOH . 
E 5 HOH A 102 502 39 HOH HOH . 
E 5 HOH A 103 503 84 HOH HOH . 
E 5 HOH A 104 504 63 HOH HOH . 
E 5 HOH A 105 505 8 HOH HOH . 
E 5 HOH A 106 506 14 HOH HOH . 
E 5 HOH A 107 507 109 HOH HOH . 
E 5 HOH A 108 508 105 HOH HOH . 
E 5 HOH A 109 509 147 HOH HOH . 
E 5 HOH A 110 510 150 HOH HOH . 
E 5 HOH A 111 511 136 HOH HOH . 
E 5 HOH A 112 512 1 HOH HOH . 
E 5 HOH A 113 513 52 HOH HOH . 
E 5 HOH A 114 514 153 HOH HOH . 
E 5 HOH A 115 515 151 HOH HOH . 
E 5 HOH A 116 516 123 HOH HOH . 
E 5 HOH A 117 517 92 HOH HOH . 
E 5 HOH A 118 518 122 HOH HOH . 
E 5 HOH A 119 519 40 HOH HOH . 
E 5 HOH A 120 520 81 HOH HOH . 
E 5 HOH A 121 521 148 HOH HOH . 
E 5 HOH A 122 522 100 HOH HOH . 
E 5 HOH A 123 523 145 HOH HOH . 
E 5 HOH A 124 524 94 HOH HOH . 
E 5 HOH A 125 525 155 HOH HOH . 
E 5 HOH A 126 526 156 HOH HOH . 
E 5 HOH A 127 527 117 HOH HOH . 
E 5 HOH A 128 528 149 HOH HOH . 
E 5 HOH A 129 529 70 HOH HOH . 
E 5 HOH A 130 530 129 HOH HOH . 
E 5 HOH A 131 531 131 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 URA . . . C 3 -9.714 -5.88 -5.317 1 14.29 ? N1 URA 302 A 1 
HETATM 2 C C2 URA . . . C 3 -10.489 -5.983 -6.443 1 12.59 ? C2 URA 302 A 1 
HETATM 3 O O2 URA . . . C 3 -11.584 -5.432 -6.554 1 10.64 ? O2 URA 302 A 1 
HETATM 4 N N3 URA . . . C 3 -9.954 -6.738 -7.459 1 11.39 ? N3 URA 302 A 1 
HETATM 5 C C4 URA . . . C 3 -8.738 -7.395 -7.429 1 11.82 ? C4 URA 302 A 1 
HETATM 6 O O4 URA . . . C 3 -8.382 -8.061 -8.421 1 12.1 ? O4 URA 302 A 1 
HETATM 7 C C5 URA . . . C 3 -7.994 -7.246 -6.208 1 12.84 ? C5 URA 302 A 1 
HETATM 8 C C6 URA . . . C 3 -8.503 -6.49 -5.206 1 12.64 ? C6 URA 302 A 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           8 
#