data_8IIN # _model_server_result.job_id PXNnXze5_XxiWoIt3QneIQ _model_server_result.datetime_utc '2025-01-10 12:09:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8iin # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 8IIN # _exptl.entry_id 8IIN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.087 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description URACIL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.71 _cell.angle_gamma 90 _cell.entry_id 8IIN _cell.length_a 36.46 _cell.length_b 51.54 _cell.length_c 54.86 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8IIN _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 23 A CYS 24 1_555 B FE3 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc2 A SG CYS 26 A CYS 27 1_555 B FE2 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc3 A ND1 HIS 94 A HIS 95 1_555 B FE4 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc4 A SG CYS 119 A CYS 120 1_555 B FE1 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? # _chem_comp.formula 'C4 H4 N2 O2' _chem_comp.formula_weight 112.087 _chem_comp.id URA _chem_comp.mon_nstd_flag . _chem_comp.name URACIL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 URA sing 370 n n N1 C6 URA sing 371 n n N1 HN1 URA sing 372 n n C2 O2 URA doub 373 n n C2 N3 URA sing 374 n n N3 C4 URA sing 375 n n N3 HN3 URA sing 376 n n C4 O4 URA doub 377 n n C4 C5 URA sing 378 n n C5 C6 URA doub 379 n n C5 H5 URA sing 380 n n C6 H6 URA sing 381 n n # _atom_sites.entry_id 8IIN _atom_sites.fract_transf_matrix[1][1] 0.027427 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007201 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019402 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018846 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SF4 A 1 301 301 SF4 SF4 . C 3 URA A 1 302 302 URA URA . D 4 HOH A 1 401 74 HOH HOH . D 4 HOH A 2 402 114 HOH HOH . D 4 HOH A 3 403 32 HOH HOH . D 4 HOH A 4 404 144 HOH HOH . D 4 HOH A 5 405 93 HOH HOH . D 4 HOH A 6 406 197 HOH HOH . D 4 HOH A 7 407 69 HOH HOH . D 4 HOH A 8 408 79 HOH HOH . D 4 HOH A 9 409 129 HOH HOH . D 4 HOH A 10 410 64 HOH HOH . D 4 HOH A 11 411 160 HOH HOH . D 4 HOH A 12 412 97 HOH HOH . D 4 HOH A 13 413 3 HOH HOH . D 4 HOH A 14 414 122 HOH HOH . D 4 HOH A 15 415 94 HOH HOH . D 4 HOH A 16 416 90 HOH HOH . D 4 HOH A 17 417 39 HOH HOH . D 4 HOH A 18 418 103 HOH HOH . D 4 HOH A 19 419 14 HOH HOH . D 4 HOH A 20 420 53 HOH HOH . D 4 HOH A 21 421 151 HOH HOH . D 4 HOH A 22 422 141 HOH HOH . D 4 HOH A 23 423 37 HOH HOH . D 4 HOH A 24 424 23 HOH HOH . D 4 HOH A 25 425 98 HOH HOH . D 4 HOH A 26 426 137 HOH HOH . D 4 HOH A 27 427 47 HOH HOH . D 4 HOH A 28 428 65 HOH HOH . D 4 HOH A 29 429 71 HOH HOH . D 4 HOH A 30 430 85 HOH HOH . D 4 HOH A 31 431 59 HOH HOH . D 4 HOH A 32 432 20 HOH HOH . D 4 HOH A 33 433 38 HOH HOH . D 4 HOH A 34 434 17 HOH HOH . D 4 HOH A 35 435 126 HOH HOH . D 4 HOH A 36 436 81 HOH HOH . D 4 HOH A 37 437 109 HOH HOH . D 4 HOH A 38 438 105 HOH HOH . D 4 HOH A 39 439 45 HOH HOH . D 4 HOH A 40 440 83 HOH HOH . D 4 HOH A 41 441 30 HOH HOH . D 4 HOH A 42 442 58 HOH HOH . D 4 HOH A 43 443 43 HOH HOH . D 4 HOH A 44 444 11 HOH HOH . D 4 HOH A 45 445 99 HOH HOH . D 4 HOH A 46 446 111 HOH HOH . D 4 HOH A 47 447 70 HOH HOH . D 4 HOH A 48 448 27 HOH HOH . D 4 HOH A 49 449 50 HOH HOH . D 4 HOH A 50 450 18 HOH HOH . D 4 HOH A 51 451 35 HOH HOH . D 4 HOH A 52 452 60 HOH HOH . D 4 HOH A 53 453 44 HOH HOH . D 4 HOH A 54 454 2 HOH HOH . D 4 HOH A 55 455 21 HOH HOH . D 4 HOH A 56 456 147 HOH HOH . D 4 HOH A 57 457 12 HOH HOH . D 4 HOH A 58 458 135 HOH HOH . D 4 HOH A 59 459 15 HOH HOH . D 4 HOH A 60 460 88 HOH HOH . D 4 HOH A 61 461 49 HOH HOH . D 4 HOH A 62 462 33 HOH HOH . D 4 HOH A 63 463 80 HOH HOH . D 4 HOH A 64 464 26 HOH HOH . D 4 HOH A 65 465 159 HOH HOH . D 4 HOH A 66 466 106 HOH HOH . D 4 HOH A 67 467 193 HOH HOH . D 4 HOH A 68 468 63 HOH HOH . D 4 HOH A 69 469 130 HOH HOH . D 4 HOH A 70 470 66 HOH HOH . D 4 HOH A 71 471 25 HOH HOH . D 4 HOH A 72 472 16 HOH HOH . D 4 HOH A 73 473 36 HOH HOH . D 4 HOH A 74 474 142 HOH HOH . D 4 HOH A 75 475 6 HOH HOH . D 4 HOH A 76 476 153 HOH HOH . D 4 HOH A 77 477 34 HOH HOH . D 4 HOH A 78 478 8 HOH HOH . D 4 HOH A 79 479 9 HOH HOH . D 4 HOH A 80 480 77 HOH HOH . D 4 HOH A 81 481 73 HOH HOH . D 4 HOH A 82 482 29 HOH HOH . D 4 HOH A 83 483 136 HOH HOH . D 4 HOH A 84 484 120 HOH HOH . D 4 HOH A 85 485 192 HOH HOH . D 4 HOH A 86 486 67 HOH HOH . D 4 HOH A 87 487 157 HOH HOH . D 4 HOH A 88 488 31 HOH HOH . D 4 HOH A 89 489 108 HOH HOH . D 4 HOH A 90 490 116 HOH HOH . D 4 HOH A 91 491 95 HOH HOH . D 4 HOH A 92 492 48 HOH HOH . D 4 HOH A 93 493 76 HOH HOH . D 4 HOH A 94 494 52 HOH HOH . D 4 HOH A 95 495 42 HOH HOH . D 4 HOH A 96 496 101 HOH HOH . D 4 HOH A 97 497 155 HOH HOH . D 4 HOH A 98 498 54 HOH HOH . D 4 HOH A 99 499 113 HOH HOH . D 4 HOH A 100 500 152 HOH HOH . D 4 HOH A 101 501 62 HOH HOH . D 4 HOH A 102 502 86 HOH HOH . D 4 HOH A 103 503 87 HOH HOH . D 4 HOH A 104 504 84 HOH HOH . D 4 HOH A 105 505 40 HOH HOH . D 4 HOH A 106 506 51 HOH HOH . D 4 HOH A 107 507 127 HOH HOH . D 4 HOH A 108 508 104 HOH HOH . D 4 HOH A 109 509 57 HOH HOH . D 4 HOH A 110 510 61 HOH HOH . D 4 HOH A 111 511 194 HOH HOH . D 4 HOH A 112 512 72 HOH HOH . D 4 HOH A 113 513 140 HOH HOH . D 4 HOH A 114 514 22 HOH HOH . D 4 HOH A 115 515 24 HOH HOH . D 4 HOH A 116 516 10 HOH HOH . D 4 HOH A 117 517 133 HOH HOH . D 4 HOH A 118 518 19 HOH HOH . D 4 HOH A 119 519 7 HOH HOH . D 4 HOH A 120 520 75 HOH HOH . D 4 HOH A 121 521 115 HOH HOH . D 4 HOH A 122 522 55 HOH HOH . D 4 HOH A 123 523 1 HOH HOH . D 4 HOH A 124 524 128 HOH HOH . D 4 HOH A 125 525 148 HOH HOH . D 4 HOH A 126 526 82 HOH HOH . D 4 HOH A 127 527 96 HOH HOH . D 4 HOH A 128 528 28 HOH HOH . D 4 HOH A 129 529 139 HOH HOH . D 4 HOH A 130 530 68 HOH HOH . D 4 HOH A 131 531 118 HOH HOH . D 4 HOH A 132 532 4 HOH HOH . D 4 HOH A 133 533 203 HOH HOH . D 4 HOH A 134 534 154 HOH HOH . D 4 HOH A 135 535 143 HOH HOH . D 4 HOH A 136 536 5 HOH HOH . D 4 HOH A 137 537 13 HOH HOH . D 4 HOH A 138 538 125 HOH HOH . D 4 HOH A 139 539 89 HOH HOH . D 4 HOH A 140 540 91 HOH HOH . D 4 HOH A 141 541 200 HOH HOH . D 4 HOH A 142 542 112 HOH HOH . D 4 HOH A 143 543 121 HOH HOH . D 4 HOH A 144 544 100 HOH HOH . D 4 HOH A 145 545 191 HOH HOH . D 4 HOH A 146 546 199 HOH HOH . D 4 HOH A 147 547 146 HOH HOH . D 4 HOH A 148 548 46 HOH HOH . D 4 HOH A 149 549 92 HOH HOH . D 4 HOH A 150 550 124 HOH HOH . D 4 HOH A 151 551 156 HOH HOH . D 4 HOH A 152 552 119 HOH HOH . D 4 HOH A 153 553 145 HOH HOH . D 4 HOH A 154 554 190 HOH HOH . D 4 HOH A 155 555 149 HOH HOH . D 4 HOH A 156 556 102 HOH HOH . D 4 HOH A 157 557 202 HOH HOH . D 4 HOH A 158 558 198 HOH HOH . D 4 HOH A 159 559 204 HOH HOH . D 4 HOH A 160 560 201 HOH HOH . D 4 HOH A 161 561 107 HOH HOH . D 4 HOH A 162 562 195 HOH HOH . D 4 HOH A 163 563 117 HOH HOH . D 4 HOH A 164 564 110 HOH HOH . D 4 HOH A 165 565 78 HOH HOH . D 4 HOH A 166 566 123 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 URA . . . C 3 -9.734 -6.031 -5.31 1 18.68 ? N1 URA 302 A 1 HETATM 2 C C2 URA . . . C 3 -10.465 -6.077 -6.462 1 17.45 ? C2 URA 302 A 1 HETATM 3 O O2 URA . . . C 3 -11.532 -5.503 -6.602 1 15.26 ? O2 URA 302 A 1 HETATM 4 N N3 URA . . . C 3 -9.918 -6.808 -7.474 1 14.78 ? N3 URA 302 A 1 HETATM 5 C C4 URA . . . C 3 -8.714 -7.467 -7.448 1 15.1 ? C4 URA 302 A 1 HETATM 6 O O4 URA . . . C 3 -8.352 -8.087 -8.445 1 13.61 ? O4 URA 302 A 1 HETATM 7 C C5 URA . . . C 3 -8.026 -7.371 -6.196 1 15.18 ? C5 URA 302 A 1 HETATM 8 C C6 URA . . . C 3 -8.547 -6.666 -5.179 1 16.27 ? C6 URA 302 A 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #