data_8IIO # _model_server_result.job_id Es_U79maFSwOMBw275vMyA _model_server_result.datetime_utc '2025-01-10 12:04:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8iio # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 8IIO # _exptl.entry_id 8IIO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.64 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IRON/SULFUR CLUSTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.1 _cell.angle_gamma 90 _cell.entry_id 8IIO _cell.length_a 36.69 _cell.length_b 51.14 _cell.length_c 54.58 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8IIO _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 24 A CYS 24 1_555 B FE3 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc2 A SG CYS 27 A CYS 27 1_555 B FE2 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc3 A ND1 HIS 95 A HIS 95 1_555 B FE4 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc4 A SG CYS 120 A CYS 120 1_555 B FE1 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? # _chem_comp.formula 'Fe4 S4' _chem_comp.formula_weight 351.64 _chem_comp.id SF4 _chem_comp.mon_nstd_flag . _chem_comp.name 'IRON/SULFUR CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S2 SF4 sing 303 n n FE1 S3 SF4 sing 304 n n FE1 S4 SF4 sing 305 n n FE2 S1 SF4 sing 306 n n FE2 S3 SF4 sing 307 n n FE2 S4 SF4 sing 308 n n FE3 S1 SF4 sing 309 n n FE3 S2 SF4 sing 310 n n FE3 S4 SF4 sing 311 n n FE4 S1 SF4 sing 312 n n FE4 S2 SF4 sing 313 n n FE4 S3 SF4 sing 314 n n # _atom_sites.entry_id 8IIO _atom_sites.fract_transf_matrix[1][1] 0.027255 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006846 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019554 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018891 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SF4 A 1 301 301 SF4 SF4 . C 3 GOL A 1 302 302 GOL GOL . D 4 HOH A 1 401 73 HOH HOH . D 4 HOH A 2 402 3 HOH HOH . D 4 HOH A 3 403 52 HOH HOH . D 4 HOH A 4 404 21 HOH HOH . D 4 HOH A 5 405 87 HOH HOH . D 4 HOH A 6 406 30 HOH HOH . D 4 HOH A 7 407 138 HOH HOH . D 4 HOH A 8 408 43 HOH HOH . D 4 HOH A 9 409 72 HOH HOH . D 4 HOH A 10 410 58 HOH HOH . D 4 HOH A 11 411 55 HOH HOH . D 4 HOH A 12 412 85 HOH HOH . D 4 HOH A 13 413 59 HOH HOH . D 4 HOH A 14 414 48 HOH HOH . D 4 HOH A 15 415 83 HOH HOH . D 4 HOH A 16 416 56 HOH HOH . D 4 HOH A 17 417 82 HOH HOH . D 4 HOH A 18 418 60 HOH HOH . D 4 HOH A 19 419 64 HOH HOH . D 4 HOH A 20 420 86 HOH HOH . D 4 HOH A 21 421 67 HOH HOH . D 4 HOH A 22 422 6 HOH HOH . D 4 HOH A 23 423 26 HOH HOH . D 4 HOH A 24 424 75 HOH HOH . D 4 HOH A 25 425 62 HOH HOH . D 4 HOH A 26 426 65 HOH HOH . D 4 HOH A 27 427 139 HOH HOH . D 4 HOH A 28 428 19 HOH HOH . D 4 HOH A 29 429 15 HOH HOH . D 4 HOH A 30 430 63 HOH HOH . D 4 HOH A 31 431 112 HOH HOH . D 4 HOH A 32 432 10 HOH HOH . D 4 HOH A 33 433 81 HOH HOH . D 4 HOH A 34 434 25 HOH HOH . D 4 HOH A 35 435 4 HOH HOH . D 4 HOH A 36 436 2 HOH HOH . D 4 HOH A 37 437 41 HOH HOH . D 4 HOH A 38 438 46 HOH HOH . D 4 HOH A 39 439 7 HOH HOH . D 4 HOH A 40 440 28 HOH HOH . D 4 HOH A 41 441 143 HOH HOH . D 4 HOH A 42 442 69 HOH HOH . D 4 HOH A 43 443 16 HOH HOH . D 4 HOH A 44 444 95 HOH HOH . D 4 HOH A 45 445 14 HOH HOH . D 4 HOH A 46 446 18 HOH HOH . D 4 HOH A 47 447 33 HOH HOH . D 4 HOH A 48 448 51 HOH HOH . D 4 HOH A 49 449 12 HOH HOH . D 4 HOH A 50 450 34 HOH HOH . D 4 HOH A 51 451 40 HOH HOH . D 4 HOH A 52 452 53 HOH HOH . D 4 HOH A 53 453 79 HOH HOH . D 4 HOH A 54 454 20 HOH HOH . D 4 HOH A 55 455 97 HOH HOH . D 4 HOH A 56 456 80 HOH HOH . D 4 HOH A 57 457 99 HOH HOH . D 4 HOH A 58 458 77 HOH HOH . D 4 HOH A 59 459 44 HOH HOH . D 4 HOH A 60 460 13 HOH HOH . D 4 HOH A 61 461 150 HOH HOH . D 4 HOH A 62 462 22 HOH HOH . D 4 HOH A 63 463 1 HOH HOH . D 4 HOH A 64 464 61 HOH HOH . D 4 HOH A 65 465 89 HOH HOH . D 4 HOH A 66 466 50 HOH HOH . D 4 HOH A 67 467 29 HOH HOH . D 4 HOH A 68 468 38 HOH HOH . D 4 HOH A 69 469 152 HOH HOH . D 4 HOH A 70 470 24 HOH HOH . D 4 HOH A 71 471 100 HOH HOH . D 4 HOH A 72 472 98 HOH HOH . D 4 HOH A 73 473 45 HOH HOH . D 4 HOH A 74 474 42 HOH HOH . D 4 HOH A 75 475 54 HOH HOH . D 4 HOH A 76 476 9 HOH HOH . D 4 HOH A 77 477 78 HOH HOH . D 4 HOH A 78 478 153 HOH HOH . D 4 HOH A 79 479 105 HOH HOH . D 4 HOH A 80 480 151 HOH HOH . D 4 HOH A 81 481 35 HOH HOH . D 4 HOH A 82 482 57 HOH HOH . D 4 HOH A 83 483 102 HOH HOH . D 4 HOH A 84 484 96 HOH HOH . D 4 HOH A 85 485 71 HOH HOH . D 4 HOH A 86 486 107 HOH HOH . D 4 HOH A 87 487 76 HOH HOH . D 4 HOH A 88 488 49 HOH HOH . D 4 HOH A 89 489 108 HOH HOH . D 4 HOH A 90 490 37 HOH HOH . D 4 HOH A 91 491 31 HOH HOH . D 4 HOH A 92 492 32 HOH HOH . D 4 HOH A 93 493 70 HOH HOH . D 4 HOH A 94 494 39 HOH HOH . D 4 HOH A 95 495 154 HOH HOH . D 4 HOH A 96 496 23 HOH HOH . D 4 HOH A 97 497 36 HOH HOH . D 4 HOH A 98 498 8 HOH HOH . D 4 HOH A 99 499 27 HOH HOH . D 4 HOH A 100 500 17 HOH HOH . D 4 HOH A 101 501 109 HOH HOH . D 4 HOH A 102 502 94 HOH HOH . D 4 HOH A 103 503 11 HOH HOH . D 4 HOH A 104 504 90 HOH HOH . D 4 HOH A 105 505 5 HOH HOH . D 4 HOH A 106 506 146 HOH HOH . D 4 HOH A 107 507 106 HOH HOH . D 4 HOH A 108 508 142 HOH HOH . D 4 HOH A 109 509 148 HOH HOH . D 4 HOH A 110 510 91 HOH HOH . D 4 HOH A 111 511 149 HOH HOH . D 4 HOH A 112 512 101 HOH HOH . D 4 HOH A 113 513 147 HOH HOH . D 4 HOH A 114 514 157 HOH HOH . D 4 HOH A 115 515 68 HOH HOH . D 4 HOH A 116 516 103 HOH HOH . D 4 HOH A 117 517 104 HOH HOH . D 4 HOH A 118 518 93 HOH HOH . D 4 HOH A 119 519 155 HOH HOH . D 4 HOH A 120 520 74 HOH HOH . D 4 HOH A 121 521 84 HOH HOH . D 4 HOH A 122 522 128 HOH HOH . D 4 HOH A 123 523 66 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 SF4 . . . B 2 1.453 -0.287 7.799 1 12.04 ? FE1 SF4 301 A 1 HETATM 2 FE FE2 SF4 . . . B 2 2.283 2.304 7.716 1 12.25 ? FE2 SF4 301 A 1 HETATM 3 FE FE3 SF4 . . . B 2 2.782 0.587 5.622 1 12.26 ? FE3 SF4 301 A 1 HETATM 4 FE FE4 SF4 . . . B 2 4.077 0.324 8.01 1 12.75 ? FE4 SF4 301 A 1 HETATM 5 S S1 SF4 . . . B 2 4.24 2.112 6.555 1 11.48 ? S1 SF4 301 A 1 HETATM 6 S S2 SF4 . . . B 2 3.155 -1.376 6.761 1 11.66 ? S2 SF4 301 A 1 HETATM 7 S S3 SF4 . . . B 2 2.463 0.876 9.492 1 12.01 ? S3 SF4 301 A 1 HETATM 8 S S4 SF4 . . . B 2 0.763 1.323 6.327 1 11.77 ? S4 SF4 301 A 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #