data_8IIP # _model_server_result.job_id VA5d-TIh12B36SzcWhx8Rg _model_server_result.datetime_utc '2025-01-10 08:18:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8iip # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 8IIP # _exptl.entry_id 8IIP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.64 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IRON/SULFUR CLUSTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.67 _cell.angle_gamma 90 _cell.entry_id 8IIP _cell.length_a 36.56 _cell.length_b 51.34 _cell.length_c 54.88 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8IIP _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 23 A CYS 24 1_555 B FE3 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc2 A SG CYS 26 A CYS 27 1_555 B FE2 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc3 A ND1 HIS 94 A HIS 95 1_555 B FE4 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc4 A SG CYS 119 A CYS 120 1_555 B FE1 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? # _chem_comp.formula 'Fe4 S4' _chem_comp.formula_weight 351.64 _chem_comp.id SF4 _chem_comp.mon_nstd_flag . _chem_comp.name 'IRON/SULFUR CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S2 SF4 sing 299 n n FE1 S3 SF4 sing 300 n n FE1 S4 SF4 sing 301 n n FE2 S1 SF4 sing 302 n n FE2 S3 SF4 sing 303 n n FE2 S4 SF4 sing 304 n n FE3 S1 SF4 sing 305 n n FE3 S2 SF4 sing 306 n n FE3 S4 SF4 sing 307 n n FE4 S1 SF4 sing 308 n n FE4 S2 SF4 sing 309 n n FE4 S3 SF4 sing 310 n n # _atom_sites.entry_id 8IIP _atom_sites.fract_transf_matrix[1][1] 0.027352 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00716 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019478 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018836 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SF4 A 1 301 301 SF4 SF4 . C 3 URA A 1 302 302 URA URA . D 4 BME A 1 303 304 BME BME . E 5 HOH A 1 401 177 HOH HOH . E 5 HOH A 2 402 176 HOH HOH . E 5 HOH A 3 403 124 HOH HOH . E 5 HOH A 4 404 50 HOH HOH . E 5 HOH A 5 405 147 HOH HOH . E 5 HOH A 6 406 28 HOH HOH . E 5 HOH A 7 407 140 HOH HOH . E 5 HOH A 8 408 56 HOH HOH . E 5 HOH A 9 409 63 HOH HOH . E 5 HOH A 10 410 42 HOH HOH . E 5 HOH A 11 411 77 HOH HOH . E 5 HOH A 12 412 166 HOH HOH . E 5 HOH A 13 413 75 HOH HOH . E 5 HOH A 14 414 136 HOH HOH . E 5 HOH A 15 415 19 HOH HOH . E 5 HOH A 16 416 175 HOH HOH . E 5 HOH A 17 417 118 HOH HOH . E 5 HOH A 18 418 121 HOH HOH . E 5 HOH A 19 419 74 HOH HOH . E 5 HOH A 20 420 36 HOH HOH . E 5 HOH A 21 421 106 HOH HOH . E 5 HOH A 22 422 94 HOH HOH . E 5 HOH A 23 423 57 HOH HOH . E 5 HOH A 24 424 24 HOH HOH . E 5 HOH A 25 425 132 HOH HOH . E 5 HOH A 26 426 5 HOH HOH . E 5 HOH A 27 427 85 HOH HOH . E 5 HOH A 28 428 79 HOH HOH . E 5 HOH A 29 429 33 HOH HOH . E 5 HOH A 30 430 86 HOH HOH . E 5 HOH A 31 431 109 HOH HOH . E 5 HOH A 32 432 142 HOH HOH . E 5 HOH A 33 433 14 HOH HOH . E 5 HOH A 34 434 100 HOH HOH . E 5 HOH A 35 435 92 HOH HOH . E 5 HOH A 36 436 174 HOH HOH . E 5 HOH A 37 437 31 HOH HOH . E 5 HOH A 38 438 98 HOH HOH . E 5 HOH A 39 439 101 HOH HOH . E 5 HOH A 40 440 13 HOH HOH . E 5 HOH A 41 441 112 HOH HOH . E 5 HOH A 42 442 183 HOH HOH . E 5 HOH A 43 443 70 HOH HOH . E 5 HOH A 44 444 59 HOH HOH . E 5 HOH A 45 445 37 HOH HOH . E 5 HOH A 46 446 123 HOH HOH . E 5 HOH A 47 447 64 HOH HOH . E 5 HOH A 48 448 105 HOH HOH . E 5 HOH A 49 449 43 HOH HOH . E 5 HOH A 50 450 61 HOH HOH . E 5 HOH A 51 451 54 HOH HOH . E 5 HOH A 52 452 17 HOH HOH . E 5 HOH A 53 453 15 HOH HOH . E 5 HOH A 54 454 11 HOH HOH . E 5 HOH A 55 455 48 HOH HOH . E 5 HOH A 56 456 134 HOH HOH . E 5 HOH A 57 457 9 HOH HOH . E 5 HOH A 58 458 110 HOH HOH . E 5 HOH A 59 459 29 HOH HOH . E 5 HOH A 60 460 81 HOH HOH . E 5 HOH A 61 461 39 HOH HOH . E 5 HOH A 62 462 26 HOH HOH . E 5 HOH A 63 463 179 HOH HOH . E 5 HOH A 64 464 47 HOH HOH . E 5 HOH A 65 465 18 HOH HOH . E 5 HOH A 66 466 3 HOH HOH . E 5 HOH A 67 467 102 HOH HOH . E 5 HOH A 68 468 7 HOH HOH . E 5 HOH A 69 469 82 HOH HOH . E 5 HOH A 70 470 21 HOH HOH . E 5 HOH A 71 471 129 HOH HOH . E 5 HOH A 72 472 55 HOH HOH . E 5 HOH A 73 473 25 HOH HOH . E 5 HOH A 74 474 72 HOH HOH . E 5 HOH A 75 475 84 HOH HOH . E 5 HOH A 76 476 30 HOH HOH . E 5 HOH A 77 477 141 HOH HOH . E 5 HOH A 78 478 104 HOH HOH . E 5 HOH A 79 479 22 HOH HOH . E 5 HOH A 80 480 45 HOH HOH . E 5 HOH A 81 481 44 HOH HOH . E 5 HOH A 82 482 152 HOH HOH . E 5 HOH A 83 483 116 HOH HOH . E 5 HOH A 84 484 8 HOH HOH . E 5 HOH A 85 485 181 HOH HOH . E 5 HOH A 86 486 20 HOH HOH . E 5 HOH A 87 487 143 HOH HOH . E 5 HOH A 88 488 35 HOH HOH . E 5 HOH A 89 489 16 HOH HOH . E 5 HOH A 90 490 103 HOH HOH . E 5 HOH A 91 491 73 HOH HOH . E 5 HOH A 92 492 6 HOH HOH . E 5 HOH A 93 493 87 HOH HOH . E 5 HOH A 94 494 96 HOH HOH . E 5 HOH A 95 495 76 HOH HOH . E 5 HOH A 96 496 62 HOH HOH . E 5 HOH A 97 497 53 HOH HOH . E 5 HOH A 98 498 135 HOH HOH . E 5 HOH A 99 499 117 HOH HOH . E 5 HOH A 100 500 90 HOH HOH . E 5 HOH A 101 501 71 HOH HOH . E 5 HOH A 102 502 49 HOH HOH . E 5 HOH A 103 503 126 HOH HOH . E 5 HOH A 104 504 99 HOH HOH . E 5 HOH A 105 505 88 HOH HOH . E 5 HOH A 106 506 125 HOH HOH . E 5 HOH A 107 507 52 HOH HOH . E 5 HOH A 108 508 46 HOH HOH . E 5 HOH A 109 509 89 HOH HOH . E 5 HOH A 110 510 130 HOH HOH . E 5 HOH A 111 511 115 HOH HOH . E 5 HOH A 112 512 40 HOH HOH . E 5 HOH A 113 513 41 HOH HOH . E 5 HOH A 114 514 32 HOH HOH . E 5 HOH A 115 515 173 HOH HOH . E 5 HOH A 116 516 66 HOH HOH . E 5 HOH A 117 517 51 HOH HOH . E 5 HOH A 118 518 69 HOH HOH . E 5 HOH A 119 519 137 HOH HOH . E 5 HOH A 120 520 93 HOH HOH . E 5 HOH A 121 521 146 HOH HOH . E 5 HOH A 122 522 78 HOH HOH . E 5 HOH A 123 523 67 HOH HOH . E 5 HOH A 124 524 114 HOH HOH . E 5 HOH A 125 525 144 HOH HOH . E 5 HOH A 126 526 128 HOH HOH . E 5 HOH A 127 527 97 HOH HOH . E 5 HOH A 128 528 23 HOH HOH . E 5 HOH A 129 529 4 HOH HOH . E 5 HOH A 130 530 107 HOH HOH . E 5 HOH A 131 531 27 HOH HOH . E 5 HOH A 132 532 148 HOH HOH . E 5 HOH A 133 533 12 HOH HOH . E 5 HOH A 134 534 2 HOH HOH . E 5 HOH A 135 535 10 HOH HOH . E 5 HOH A 136 536 38 HOH HOH . E 5 HOH A 137 537 151 HOH HOH . E 5 HOH A 138 538 1 HOH HOH . E 5 HOH A 139 539 120 HOH HOH . E 5 HOH A 140 540 65 HOH HOH . E 5 HOH A 141 541 131 HOH HOH . E 5 HOH A 142 542 122 HOH HOH . E 5 HOH A 143 543 111 HOH HOH . E 5 HOH A 144 544 113 HOH HOH . E 5 HOH A 145 545 108 HOH HOH . E 5 HOH A 146 546 133 HOH HOH . E 5 HOH A 147 547 119 HOH HOH . E 5 HOH A 148 548 58 HOH HOH . E 5 HOH A 149 549 91 HOH HOH . E 5 HOH A 150 550 138 HOH HOH . E 5 HOH A 151 551 145 HOH HOH . E 5 HOH A 152 552 182 HOH HOH . E 5 HOH A 153 553 127 HOH HOH . E 5 HOH A 154 554 178 HOH HOH . E 5 HOH A 155 555 83 HOH HOH . E 5 HOH A 156 556 60 HOH HOH . E 5 HOH A 157 557 68 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 SF4 . . . B 2 -10.012 0.408 -18.67 1 11.39 ? FE1 SF4 301 A 1 HETATM 2 FE FE2 SF4 . . . B 2 -9.212 2.993 -18.655 1 12 ? FE2 SF4 301 A 1 HETATM 3 FE FE3 SF4 . . . B 2 -8.702 1.37 -20.784 1 12.13 ? FE3 SF4 301 A 1 HETATM 4 FE FE4 SF4 . . . B 2 -7.415 1.003 -18.493 1 13.26 ? FE4 SF4 301 A 1 HETATM 5 S S1 SF4 . . . B 2 -7.265 2.879 -19.839 1 11.07 ? S1 SF4 301 A 1 HETATM 6 S S2 SF4 . . . B 2 -8.335 -0.65 -19.771 1 10.46 ? S2 SF4 301 A 1 HETATM 7 S S3 SF4 . . . B 2 -8.998 1.449 -16.938 1 9.89 ? S3 SF4 301 A 1 HETATM 8 S S4 SF4 . . . B 2 -10.725 2.091 -20.068 1 10.97 ? S4 SF4 301 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 8 #