data_8IIT
#
_model_server_result.job_id            kFS7jeAhXn_AklR-QKCuuA 
_model_server_result.datetime_utc      '2024-10-20 01:34:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8iit 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":302}' 
#
_entry.id    8IIT 
#
_exptl.entry_id    8IIT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              112.087 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            URACIL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          104.84 
_cell.angle_gamma         90 
_cell.entry_id            8IIT 
_cell.length_a            36.44 
_cell.length_b            51.42 
_cell.length_c            54.94 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8IIT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 23 A CYS 24 1_555 B FE3 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? 
metalc ? metalc2 A SG CYS 26 A CYS 27 1_555 B FE2 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? 
metalc ? metalc3 A ND1 HIS 94 A HIS 95 1_555 B FE4 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? 
metalc ? metalc4 A SG CYS 119 A CYS 120 1_555 B FE1 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? 
#
_chem_comp.formula           'C4 H4 N2 O2' 
_chem_comp.formula_weight    112.087 
_chem_comp.id                URA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              URACIL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 URA sing 370 n n 
N1 C6 URA sing 371 n n 
N1 HN1 URA sing 372 n n 
C2 O2 URA doub 373 n n 
C2 N3 URA sing 374 n n 
N3 C4 URA sing 375 n n 
N3 HN3 URA sing 376 n n 
C4 O4 URA doub 377 n n 
C4 C5 URA sing 378 n n 
C5 C6 URA doub 379 n n 
C5 H5 URA sing 380 n n 
C6 H6 URA sing 381 n n 
#
_atom_sites.entry_id                     8IIT 
_atom_sites.fract_transf_matrix[1][1]    0.027442 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.007271 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019448 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01883 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SF4 A 1 301 301 SF4 SF4 . 
C 3 URA A 1 302 302 URA URA . 
D 4 HOH A 1 401 138 HOH HOH . 
D 4 HOH A 2 402 131 HOH HOH . 
D 4 HOH A 3 403 53 HOH HOH . 
D 4 HOH A 4 404 71 HOH HOH . 
D 4 HOH A 5 405 108 HOH HOH . 
D 4 HOH A 6 406 198 HOH HOH . 
D 4 HOH A 7 407 68 HOH HOH . 
D 4 HOH A 8 408 197 HOH HOH . 
D 4 HOH A 9 409 109 HOH HOH . 
D 4 HOH A 10 410 87 HOH HOH . 
D 4 HOH A 11 411 127 HOH HOH . 
D 4 HOH A 12 412 93 HOH HOH . 
D 4 HOH A 13 413 41 HOH HOH . 
D 4 HOH A 14 414 88 HOH HOH . 
D 4 HOH A 15 415 26 HOH HOH . 
D 4 HOH A 16 416 70 HOH HOH . 
D 4 HOH A 17 417 134 HOH HOH . 
D 4 HOH A 18 418 126 HOH HOH . 
D 4 HOH A 19 419 37 HOH HOH . 
D 4 HOH A 20 420 63 HOH HOH . 
D 4 HOH A 21 421 42 HOH HOH . 
D 4 HOH A 22 422 94 HOH HOH . 
D 4 HOH A 23 423 48 HOH HOH . 
D 4 HOH A 24 424 31 HOH HOH . 
D 4 HOH A 25 425 114 HOH HOH . 
D 4 HOH A 26 426 15 HOH HOH . 
D 4 HOH A 27 427 133 HOH HOH . 
D 4 HOH A 28 428 39 HOH HOH . 
D 4 HOH A 29 429 84 HOH HOH . 
D 4 HOH A 30 430 102 HOH HOH . 
D 4 HOH A 31 431 12 HOH HOH . 
D 4 HOH A 32 432 47 HOH HOH . 
D 4 HOH A 33 433 199 HOH HOH . 
D 4 HOH A 34 434 107 HOH HOH . 
D 4 HOH A 35 435 79 HOH HOH . 
D 4 HOH A 36 436 3 HOH HOH . 
D 4 HOH A 37 437 11 HOH HOH . 
D 4 HOH A 38 438 120 HOH HOH . 
D 4 HOH A 39 439 21 HOH HOH . 
D 4 HOH A 40 440 56 HOH HOH . 
D 4 HOH A 41 441 40 HOH HOH . 
D 4 HOH A 42 442 43 HOH HOH . 
D 4 HOH A 43 443 28 HOH HOH . 
D 4 HOH A 44 444 81 HOH HOH . 
D 4 HOH A 45 445 140 HOH HOH . 
D 4 HOH A 46 446 44 HOH HOH . 
D 4 HOH A 47 447 45 HOH HOH . 
D 4 HOH A 48 448 30 HOH HOH . 
D 4 HOH A 49 449 16 HOH HOH . 
D 4 HOH A 50 450 135 HOH HOH . 
D 4 HOH A 51 451 105 HOH HOH . 
D 4 HOH A 52 452 121 HOH HOH . 
D 4 HOH A 53 453 58 HOH HOH . 
D 4 HOH A 54 454 103 HOH HOH . 
D 4 HOH A 55 455 104 HOH HOH . 
D 4 HOH A 56 456 46 HOH HOH . 
D 4 HOH A 57 457 9 HOH HOH . 
D 4 HOH A 58 458 29 HOH HOH . 
D 4 HOH A 59 459 2 HOH HOH . 
D 4 HOH A 60 460 23 HOH HOH . 
D 4 HOH A 61 461 141 HOH HOH . 
D 4 HOH A 62 462 195 HOH HOH . 
D 4 HOH A 63 463 52 HOH HOH . 
D 4 HOH A 64 464 74 HOH HOH . 
D 4 HOH A 65 465 67 HOH HOH . 
D 4 HOH A 66 466 201 HOH HOH . 
D 4 HOH A 67 467 50 HOH HOH . 
D 4 HOH A 68 468 62 HOH HOH . 
D 4 HOH A 69 469 19 HOH HOH . 
D 4 HOH A 70 470 73 HOH HOH . 
D 4 HOH A 71 471 24 HOH HOH . 
D 4 HOH A 72 472 33 HOH HOH . 
D 4 HOH A 73 473 191 HOH HOH . 
D 4 HOH A 74 474 65 HOH HOH . 
D 4 HOH A 75 475 59 HOH HOH . 
D 4 HOH A 76 476 77 HOH HOH . 
D 4 HOH A 77 477 22 HOH HOH . 
D 4 HOH A 78 478 192 HOH HOH . 
D 4 HOH A 79 479 64 HOH HOH . 
D 4 HOH A 80 480 61 HOH HOH . 
D 4 HOH A 81 481 89 HOH HOH . 
D 4 HOH A 82 482 20 HOH HOH . 
D 4 HOH A 83 483 92 HOH HOH . 
D 4 HOH A 84 484 32 HOH HOH . 
D 4 HOH A 85 485 6 HOH HOH . 
D 4 HOH A 86 486 75 HOH HOH . 
D 4 HOH A 87 487 148 HOH HOH . 
D 4 HOH A 88 488 35 HOH HOH . 
D 4 HOH A 89 489 132 HOH HOH . 
D 4 HOH A 90 490 96 HOH HOH . 
D 4 HOH A 91 491 99 HOH HOH . 
D 4 HOH A 92 492 137 HOH HOH . 
D 4 HOH A 93 493 117 HOH HOH . 
D 4 HOH A 94 494 85 HOH HOH . 
D 4 HOH A 95 495 128 HOH HOH . 
D 4 HOH A 96 496 60 HOH HOH . 
D 4 HOH A 97 497 124 HOH HOH . 
D 4 HOH A 98 498 18 HOH HOH . 
D 4 HOH A 99 499 49 HOH HOH . 
D 4 HOH A 100 500 91 HOH HOH . 
D 4 HOH A 101 501 123 HOH HOH . 
D 4 HOH A 102 502 83 HOH HOH . 
D 4 HOH A 103 503 115 HOH HOH . 
D 4 HOH A 104 504 54 HOH HOH . 
D 4 HOH A 105 505 13 HOH HOH . 
D 4 HOH A 106 506 14 HOH HOH . 
D 4 HOH A 107 507 144 HOH HOH . 
D 4 HOH A 108 508 82 HOH HOH . 
D 4 HOH A 109 509 34 HOH HOH . 
D 4 HOH A 110 510 112 HOH HOH . 
D 4 HOH A 111 511 118 HOH HOH . 
D 4 HOH A 112 512 7 HOH HOH . 
D 4 HOH A 113 513 86 HOH HOH . 
D 4 HOH A 114 514 17 HOH HOH . 
D 4 HOH A 115 515 78 HOH HOH . 
D 4 HOH A 116 516 57 HOH HOH . 
D 4 HOH A 117 517 200 HOH HOH . 
D 4 HOH A 118 518 136 HOH HOH . 
D 4 HOH A 119 519 36 HOH HOH . 
D 4 HOH A 120 520 150 HOH HOH . 
D 4 HOH A 121 521 185 HOH HOH . 
D 4 HOH A 122 522 5 HOH HOH . 
D 4 HOH A 123 523 69 HOH HOH . 
D 4 HOH A 124 524 1 HOH HOH . 
D 4 HOH A 125 525 76 HOH HOH . 
D 4 HOH A 126 526 116 HOH HOH . 
D 4 HOH A 127 527 25 HOH HOH . 
D 4 HOH A 128 528 4 HOH HOH . 
D 4 HOH A 129 529 174 HOH HOH . 
D 4 HOH A 130 530 113 HOH HOH . 
D 4 HOH A 131 531 100 HOH HOH . 
D 4 HOH A 132 532 8 HOH HOH . 
D 4 HOH A 133 533 122 HOH HOH . 
D 4 HOH A 134 534 149 HOH HOH . 
D 4 HOH A 135 535 129 HOH HOH . 
D 4 HOH A 136 536 119 HOH HOH . 
D 4 HOH A 137 537 111 HOH HOH . 
D 4 HOH A 138 538 106 HOH HOH . 
D 4 HOH A 139 539 66 HOH HOH . 
D 4 HOH A 140 540 196 HOH HOH . 
D 4 HOH A 141 541 130 HOH HOH . 
D 4 HOH A 142 542 98 HOH HOH . 
D 4 HOH A 143 543 80 HOH HOH . 
D 4 HOH A 144 544 51 HOH HOH . 
D 4 HOH A 145 545 178 HOH HOH . 
D 4 HOH A 146 546 101 HOH HOH . 
D 4 HOH A 147 547 72 HOH HOH . 
D 4 HOH A 148 548 90 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 URA . . . C 3 -9.586 -5.94 -5.318 1 12.81 ? N1 URA 302 A 1 
HETATM 2 C C2 URA . . . C 3 -10.364 -6.023 -6.46 1 12.06 ? C2 URA 302 A 1 
HETATM 3 O O2 URA . . . C 3 -11.449 -5.436 -6.563 1 10.89 ? O2 URA 302 A 1 
HETATM 4 N N3 URA . . . C 3 -9.841 -6.762 -7.481 1 9.98 ? N3 URA 302 A 1 
HETATM 5 C C4 URA . . . C 3 -8.608 -7.396 -7.473 1 11.25 ? C4 URA 302 A 1 
HETATM 6 O O4 URA . . . C 3 -8.239 -8.037 -8.458 1 10.65 ? O4 URA 302 A 1 
HETATM 7 C C5 URA . . . C 3 -7.896 -7.338 -6.209 1 9.98 ? C5 URA 302 A 1 
HETATM 8 C C6 URA . . . C 3 -8.397 -6.599 -5.193 1 11.42 ? C6 URA 302 A 1 
#
_model_server_stats.io_time_ms              170 
_model_server_stats.parse_time_ms           107 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           259 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           8 
#