data_8IIY # _model_server_result.job_id I4EaFbkUXjtTwJR3NVK_vA _model_server_result.datetime_utc '2024-11-22 21:06:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8iiy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":202}' # _entry.id 8IIY # _exptl.entry_id 8IIY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8IIY _cell.length_a 66.241 _cell.length_b 66.241 _cell.length_c 248.821 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8IIY _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 GLC GLC C1 O1 . O4 HO4 . sing 2 ? 3 3 2 GLC GLC C1 O1 . O4 HO4 . sing 3 ? 3 4 3 GLC GLC C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n D GLC 1 D 1 GLC D 501 MTT 3 n D GLC 2 D 2 GLC D 501 MTT 3 n D GLC 3 D 3 GLC D 501 MTT 3 n D GLC 4 D 4 GLC D 501 MTT # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C GLY 13 C GLY 13 1_555 C N ALY 14 C ALY 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 C C ALY 14 C ALY 14 1_555 C N ALA 15 C ALA 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 D O4 GLC . D GLC 1 1_555 D C1 GLC . D GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale4 D O4 GLC . D GLC 2 1_555 D C1 GLC . D GLC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale5 D O4 GLC . D GLC 3 1_555 D C1 GLC . D GLC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 168 n n C1 C2 GOL sing 169 n n C1 H11 GOL sing 170 n n C1 H12 GOL sing 171 n n O1 HO1 GOL sing 172 n n C2 O2 GOL sing 173 n n C2 C3 GOL sing 174 n n C2 H2 GOL sing 175 n n O2 HO2 GOL sing 176 n n C3 O3 GOL sing 177 n n C3 H31 GOL sing 178 n n C3 H32 GOL sing 179 n n O3 HO3 GOL sing 180 n n # _atom_sites.entry_id 8IIY _atom_sites.fract_transf_matrix[1][1] 0.015096 _atom_sites.fract_transf_matrix[1][2] 0.008716 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017432 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004019 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 GOL A 1 201 1 GOL GOL . F 4 GOL A 1 202 2 GOL GOL . G 5 HOH A 1 301 32 HOH HOH . G 5 HOH A 2 302 34 HOH HOH . G 5 HOH A 3 303 145 HOH HOH . G 5 HOH A 4 304 108 HOH HOH . G 5 HOH A 5 305 118 HOH HOH . G 5 HOH A 6 306 18 HOH HOH . G 5 HOH A 7 307 17 HOH HOH . G 5 HOH A 8 308 112 HOH HOH . G 5 HOH A 9 309 77 HOH HOH . G 5 HOH A 10 310 2 HOH HOH . G 5 HOH A 11 311 51 HOH HOH . G 5 HOH A 12 312 127 HOH HOH . G 5 HOH A 13 313 71 HOH HOH . G 5 HOH A 14 314 52 HOH HOH . G 5 HOH A 15 315 99 HOH HOH . G 5 HOH A 16 316 45 HOH HOH . G 5 HOH A 17 317 73 HOH HOH . G 5 HOH A 18 318 105 HOH HOH . G 5 HOH A 19 319 95 HOH HOH . G 5 HOH A 20 320 75 HOH HOH . G 5 HOH A 21 321 19 HOH HOH . G 5 HOH A 22 322 80 HOH HOH . G 5 HOH A 23 323 89 HOH HOH . G 5 HOH A 24 324 26 HOH HOH . G 5 HOH A 25 325 135 HOH HOH . G 5 HOH A 26 326 103 HOH HOH . G 5 HOH A 27 327 65 HOH HOH . G 5 HOH A 28 328 20 HOH HOH . G 5 HOH A 29 329 119 HOH HOH . G 5 HOH A 30 330 106 HOH HOH . G 5 HOH A 31 331 39 HOH HOH . G 5 HOH A 32 332 70 HOH HOH . G 5 HOH A 33 333 107 HOH HOH . G 5 HOH A 34 334 22 HOH HOH . G 5 HOH A 35 335 120 HOH HOH . G 5 HOH A 36 336 62 HOH HOH . G 5 HOH A 37 337 29 HOH HOH . G 5 HOH A 38 338 111 HOH HOH . G 5 HOH A 39 339 6 HOH HOH . G 5 HOH A 40 340 12 HOH HOH . G 5 HOH A 41 341 100 HOH HOH . G 5 HOH A 42 342 104 HOH HOH . G 5 HOH A 43 343 38 HOH HOH . G 5 HOH A 44 344 42 HOH HOH . G 5 HOH A 45 345 129 HOH HOH . G 5 HOH A 46 346 31 HOH HOH . G 5 HOH A 47 347 122 HOH HOH . G 5 HOH A 48 348 56 HOH HOH . G 5 HOH A 49 349 30 HOH HOH . G 5 HOH A 50 350 72 HOH HOH . G 5 HOH A 51 351 28 HOH HOH . G 5 HOH A 52 352 37 HOH HOH . G 5 HOH A 53 353 59 HOH HOH . G 5 HOH A 54 354 5 HOH HOH . G 5 HOH A 55 355 134 HOH HOH . G 5 HOH A 56 356 55 HOH HOH . G 5 HOH A 57 357 69 HOH HOH . G 5 HOH A 58 358 92 HOH HOH . G 5 HOH A 59 359 115 HOH HOH . G 5 HOH A 60 360 131 HOH HOH . G 5 HOH A 61 361 40 HOH HOH . G 5 HOH A 62 362 35 HOH HOH . G 5 HOH A 63 363 141 HOH HOH . G 5 HOH A 64 364 109 HOH HOH . G 5 HOH A 65 365 96 HOH HOH . G 5 HOH A 66 366 50 HOH HOH . G 5 HOH A 67 367 130 HOH HOH . G 5 HOH A 68 368 86 HOH HOH . G 5 HOH A 69 369 74 HOH HOH . G 5 HOH A 70 370 14 HOH HOH . G 5 HOH A 71 371 23 HOH HOH . G 5 HOH A 72 372 41 HOH HOH . G 5 HOH A 73 373 16 HOH HOH . G 5 HOH A 74 374 90 HOH HOH . G 5 HOH A 75 375 33 HOH HOH . G 5 HOH A 76 376 24 HOH HOH . G 5 HOH A 77 377 44 HOH HOH . G 5 HOH A 78 378 137 HOH HOH . G 5 HOH A 79 379 132 HOH HOH . G 5 HOH A 80 380 1 HOH HOH . G 5 HOH A 81 381 58 HOH HOH . G 5 HOH A 82 382 87 HOH HOH . G 5 HOH A 83 383 25 HOH HOH . G 5 HOH A 84 384 46 HOH HOH . G 5 HOH A 85 385 7 HOH HOH . G 5 HOH A 86 386 123 HOH HOH . G 5 HOH A 87 387 91 HOH HOH . G 5 HOH A 88 388 54 HOH HOH . G 5 HOH A 89 389 128 HOH HOH . G 5 HOH A 90 390 113 HOH HOH . G 5 HOH A 91 391 48 HOH HOH . G 5 HOH A 92 392 13 HOH HOH . G 5 HOH A 93 393 94 HOH HOH . G 5 HOH A 94 394 3 HOH HOH . G 5 HOH A 95 395 88 HOH HOH . G 5 HOH A 96 396 21 HOH HOH . G 5 HOH A 97 397 47 HOH HOH . G 5 HOH A 98 398 61 HOH HOH . G 5 HOH A 99 399 9 HOH HOH . G 5 HOH A 100 400 93 HOH HOH . G 5 HOH A 101 401 139 HOH HOH . G 5 HOH A 102 402 53 HOH HOH . G 5 HOH A 103 403 117 HOH HOH . G 5 HOH A 104 404 8 HOH HOH . G 5 HOH A 105 405 83 HOH HOH . G 5 HOH A 106 406 124 HOH HOH . G 5 HOH A 107 407 64 HOH HOH . G 5 HOH A 108 408 43 HOH HOH . G 5 HOH A 109 409 136 HOH HOH . G 5 HOH A 110 410 101 HOH HOH . G 5 HOH A 111 411 27 HOH HOH . G 5 HOH A 112 412 79 HOH HOH . G 5 HOH A 113 413 84 HOH HOH . G 5 HOH A 114 414 138 HOH HOH . G 5 HOH A 115 415 11 HOH HOH . G 5 HOH A 116 416 63 HOH HOH . G 5 HOH A 117 417 57 HOH HOH . G 5 HOH A 118 418 110 HOH HOH . G 5 HOH A 119 419 142 HOH HOH . G 5 HOH A 120 420 10 HOH HOH . G 5 HOH A 121 421 140 HOH HOH . G 5 HOH A 122 422 102 HOH HOH . G 5 HOH A 123 423 81 HOH HOH . G 5 HOH A 124 424 116 HOH HOH . G 5 HOH A 125 425 4 HOH HOH . G 5 HOH A 126 426 143 HOH HOH . G 5 HOH A 127 427 49 HOH HOH . G 5 HOH A 128 428 121 HOH HOH . G 5 HOH A 129 429 76 HOH HOH . G 5 HOH A 130 430 67 HOH HOH . G 5 HOH A 131 431 98 HOH HOH . G 5 HOH A 132 432 66 HOH HOH . G 5 HOH A 133 433 126 HOH HOH . G 5 HOH A 134 434 114 HOH HOH . G 5 HOH A 135 435 78 HOH HOH . G 5 HOH A 136 436 82 HOH HOH . G 5 HOH A 137 437 68 HOH HOH . G 5 HOH A 138 438 60 HOH HOH . G 5 HOH A 139 439 125 HOH HOH . G 5 HOH A 140 440 133 HOH HOH . G 5 HOH A 141 441 144 HOH HOH . H 5 HOH B 1 101 36 HOH HOH . I 5 HOH C 1 101 97 HOH HOH . I 5 HOH C 2 102 85 HOH HOH . I 5 HOH C 3 103 15 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 4 32.564 -11.402 7.199 1 81.36 ? C1 GOL 202 A 1 HETATM 2 O O1 GOL . . . F 4 32.809 -12.801 7.307 1 81.07 ? O1 GOL 202 A 1 HETATM 3 C C2 GOL . . . F 4 33.847 -10.627 6.989 1 81.29 ? C2 GOL 202 A 1 HETATM 4 O O2 GOL . . . F 4 34.894 -11.518 6.606 1 80.34 ? O2 GOL 202 A 1 HETATM 5 C C3 GOL . . . F 4 33.706 -9.533 5.952 1 82.02 ? C3 GOL 202 A 1 HETATM 6 O O3 GOL . . . F 4 34.918 -8.802 5.783 1 84.68 ? O3 GOL 202 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #