data_8IJ9 # _model_server_result.job_id yC5BhcVVFIIbl_1qzkgusg _model_server_result.datetime_utc '2025-03-20 09:33:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ij9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1001}' # _entry.id 8IJ9 # _exptl.entry_id 8IJ9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.173 _entity.id 5 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'TRIETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.74 _cell.angle_gamma 90 _cell.entry_id 8IJ9 _cell.length_a 49.193 _cell.length_b 93.227 _cell.length_c 53.077 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8IJ9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,J,L 1 1 B,D,G,H,I,K,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 24 A THR 27 1_555 F MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc2 A OG1 THR 42 A THR 45 1_555 F MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc3 E O1G GTP . A GTP 201 1_555 F MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc4 E O2B GTP . A GTP 201 1_555 F MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc5 F MG MG . A MG 202 1_555 J O HOH . A HOH 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc6 F MG MG . A MG 202 1_555 J O HOH . A HOH 348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc7 B OG1 THR 24 B THR 27 1_555 H MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc8 B OG1 THR 42 B THR 45 1_555 H MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc9 G O1G GTP . B GTP 201 1_555 H MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc10 G O2B GTP . B GTP 201 1_555 H MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc11 H MG MG . B MG 202 1_555 K O HOH . B HOH 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc12 H MG MG . B MG 202 1_555 K O HOH . B HOH 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? # _chem_comp.formula 'C6 H14 O4' _chem_comp.formula_weight 150.173 _chem_comp.id PGE _chem_comp.mon_nstd_flag . _chem_comp.name 'TRIETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PGE sing 274 n n C1 C2 PGE sing 275 n n C1 H1 PGE sing 276 n n C1 H12 PGE sing 277 n n O1 HO1 PGE sing 278 n n C2 O2 PGE sing 279 n n C2 H2 PGE sing 280 n n C2 H22 PGE sing 281 n n O2 C3 PGE sing 282 n n C3 C4 PGE sing 283 n n C3 H3 PGE sing 284 n n C3 H32 PGE sing 285 n n C4 O3 PGE sing 286 n n C4 H4 PGE sing 287 n n C4 H42 PGE sing 288 n n O4 C6 PGE sing 289 n n O4 HO4 PGE sing 290 n n C6 C5 PGE sing 291 n n C6 H6 PGE sing 292 n n C6 H62 PGE sing 293 n n C5 O3 PGE sing 294 n n C5 H5 PGE sing 295 n n C5 H52 PGE sing 296 n n # _atom_sites.entry_id 8IJ9 _atom_sites.fract_transf_matrix[1][1] 0.020328 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00497 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010727 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019395 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GTP A 1 201 101 GTP GTP . F 4 MG A 1 202 1 MG MG . G 3 GTP B 1 201 201 GTP GTP . H 4 MG B 1 202 2 MG MG . I 5 PGE D 1 1001 1001 PGE PGE . J 6 HOH A 1 301 201 HOH HOH . J 6 HOH A 2 302 121 HOH HOH . J 6 HOH A 3 303 74 HOH HOH . J 6 HOH A 4 304 173 HOH HOH . J 6 HOH A 5 305 27 HOH HOH . J 6 HOH A 6 306 152 HOH HOH . J 6 HOH A 7 307 49 HOH HOH . J 6 HOH A 8 308 215 HOH HOH . J 6 HOH A 9 309 81 HOH HOH . J 6 HOH A 10 310 13 HOH HOH . J 6 HOH A 11 311 31 HOH HOH . J 6 HOH A 12 312 62 HOH HOH . J 6 HOH A 13 313 216 HOH HOH . J 6 HOH A 14 314 88 HOH HOH . J 6 HOH A 15 315 9 HOH HOH . J 6 HOH A 16 316 146 HOH HOH . J 6 HOH A 17 317 19 HOH HOH . J 6 HOH A 18 318 44 HOH HOH . J 6 HOH A 19 319 123 HOH HOH . J 6 HOH A 20 320 177 HOH HOH . J 6 HOH A 21 321 113 HOH HOH . J 6 HOH A 22 322 135 HOH HOH . J 6 HOH A 23 323 150 HOH HOH . J 6 HOH A 24 324 185 HOH HOH . J 6 HOH A 25 325 182 HOH HOH . J 6 HOH A 26 326 22 HOH HOH . J 6 HOH A 27 327 70 HOH HOH . J 6 HOH A 28 328 124 HOH HOH . J 6 HOH A 29 329 94 HOH HOH . J 6 HOH A 30 330 132 HOH HOH . J 6 HOH A 31 331 199 HOH HOH . J 6 HOH A 32 332 41 HOH HOH . J 6 HOH A 33 333 221 HOH HOH . J 6 HOH A 34 334 57 HOH HOH . J 6 HOH A 35 335 80 HOH HOH . J 6 HOH A 36 336 15 HOH HOH . J 6 HOH A 37 337 32 HOH HOH . J 6 HOH A 38 338 23 HOH HOH . J 6 HOH A 39 339 78 HOH HOH . J 6 HOH A 40 340 178 HOH HOH . J 6 HOH A 41 341 100 HOH HOH . J 6 HOH A 42 342 29 HOH HOH . J 6 HOH A 43 343 18 HOH HOH . J 6 HOH A 44 344 48 HOH HOH . J 6 HOH A 45 345 56 HOH HOH . J 6 HOH A 46 346 11 HOH HOH . J 6 HOH A 47 347 207 HOH HOH . J 6 HOH A 48 348 69 HOH HOH . J 6 HOH A 49 349 43 HOH HOH . J 6 HOH A 50 350 38 HOH HOH . J 6 HOH A 51 351 45 HOH HOH . J 6 HOH A 52 352 17 HOH HOH . J 6 HOH A 53 353 85 HOH HOH . J 6 HOH A 54 354 75 HOH HOH . J 6 HOH A 55 355 95 HOH HOH . J 6 HOH A 56 356 174 HOH HOH . J 6 HOH A 57 357 21 HOH HOH . J 6 HOH A 58 358 134 HOH HOH . J 6 HOH A 59 359 46 HOH HOH . J 6 HOH A 60 360 131 HOH HOH . J 6 HOH A 61 361 114 HOH HOH . J 6 HOH A 62 362 101 HOH HOH . J 6 HOH A 63 363 91 HOH HOH . J 6 HOH A 64 364 172 HOH HOH . J 6 HOH A 65 365 220 HOH HOH . J 6 HOH A 66 366 10 HOH HOH . J 6 HOH A 67 367 110 HOH HOH . J 6 HOH A 68 368 214 HOH HOH . J 6 HOH A 69 369 144 HOH HOH . J 6 HOH A 70 370 54 HOH HOH . J 6 HOH A 71 371 129 HOH HOH . J 6 HOH A 72 372 89 HOH HOH . J 6 HOH A 73 373 225 HOH HOH . J 6 HOH A 74 374 51 HOH HOH . J 6 HOH A 75 375 217 HOH HOH . J 6 HOH A 76 376 34 HOH HOH . J 6 HOH A 77 377 111 HOH HOH . J 6 HOH A 78 378 142 HOH HOH . J 6 HOH A 79 379 5 HOH HOH . J 6 HOH A 80 380 71 HOH HOH . J 6 HOH A 81 381 64 HOH HOH . J 6 HOH A 82 382 209 HOH HOH . J 6 HOH A 83 383 147 HOH HOH . J 6 HOH A 84 384 120 HOH HOH . J 6 HOH A 85 385 186 HOH HOH . J 6 HOH A 86 386 203 HOH HOH . J 6 HOH A 87 387 119 HOH HOH . J 6 HOH A 88 388 155 HOH HOH . J 6 HOH A 89 389 86 HOH HOH . J 6 HOH A 90 390 184 HOH HOH . J 6 HOH A 91 391 112 HOH HOH . K 6 HOH B 1 301 116 HOH HOH . K 6 HOH B 2 302 194 HOH HOH . K 6 HOH B 3 303 61 HOH HOH . K 6 HOH B 4 304 42 HOH HOH . K 6 HOH B 5 305 103 HOH HOH . K 6 HOH B 6 306 8 HOH HOH . K 6 HOH B 7 307 6 HOH HOH . K 6 HOH B 8 308 107 HOH HOH . K 6 HOH B 9 309 133 HOH HOH . K 6 HOH B 10 310 108 HOH HOH . K 6 HOH B 11 311 141 HOH HOH . K 6 HOH B 12 312 183 HOH HOH . K 6 HOH B 13 313 202 HOH HOH . K 6 HOH B 14 314 171 HOH HOH . K 6 HOH B 15 315 12 HOH HOH . K 6 HOH B 16 316 163 HOH HOH . K 6 HOH B 17 317 192 HOH HOH . K 6 HOH B 18 318 77 HOH HOH . K 6 HOH B 19 319 198 HOH HOH . K 6 HOH B 20 320 206 HOH HOH . K 6 HOH B 21 321 14 HOH HOH . K 6 HOH B 22 322 33 HOH HOH . K 6 HOH B 23 323 204 HOH HOH . K 6 HOH B 24 324 191 HOH HOH . K 6 HOH B 25 325 60 HOH HOH . K 6 HOH B 26 326 30 HOH HOH . K 6 HOH B 27 327 96 HOH HOH . K 6 HOH B 28 328 154 HOH HOH . K 6 HOH B 29 329 157 HOH HOH . K 6 HOH B 30 330 82 HOH HOH . K 6 HOH B 31 331 90 HOH HOH . K 6 HOH B 32 332 63 HOH HOH . K 6 HOH B 33 333 55 HOH HOH . K 6 HOH B 34 334 35 HOH HOH . K 6 HOH B 35 335 160 HOH HOH . K 6 HOH B 36 336 50 HOH HOH . K 6 HOH B 37 337 162 HOH HOH . K 6 HOH B 38 338 79 HOH HOH . K 6 HOH B 39 339 16 HOH HOH . K 6 HOH B 40 340 138 HOH HOH . K 6 HOH B 41 341 26 HOH HOH . K 6 HOH B 42 342 37 HOH HOH . K 6 HOH B 43 343 67 HOH HOH . K 6 HOH B 44 344 189 HOH HOH . K 6 HOH B 45 345 128 HOH HOH . K 6 HOH B 46 346 20 HOH HOH . K 6 HOH B 47 347 161 HOH HOH . K 6 HOH B 48 348 53 HOH HOH . K 6 HOH B 49 349 4 HOH HOH . K 6 HOH B 50 350 25 HOH HOH . K 6 HOH B 51 351 73 HOH HOH . K 6 HOH B 52 352 136 HOH HOH . K 6 HOH B 53 353 106 HOH HOH . K 6 HOH B 54 354 219 HOH HOH . K 6 HOH B 55 355 109 HOH HOH . K 6 HOH B 56 356 36 HOH HOH . K 6 HOH B 57 357 169 HOH HOH . K 6 HOH B 58 358 66 HOH HOH . K 6 HOH B 59 359 76 HOH HOH . K 6 HOH B 60 360 125 HOH HOH . K 6 HOH B 61 361 190 HOH HOH . K 6 HOH B 62 362 65 HOH HOH . K 6 HOH B 63 363 7 HOH HOH . K 6 HOH B 64 364 180 HOH HOH . K 6 HOH B 65 365 1 HOH HOH . K 6 HOH B 66 366 148 HOH HOH . K 6 HOH B 67 367 226 HOH HOH . K 6 HOH B 68 368 83 HOH HOH . K 6 HOH B 69 369 196 HOH HOH . K 6 HOH B 70 370 93 HOH HOH . K 6 HOH B 71 371 179 HOH HOH . K 6 HOH B 72 372 28 HOH HOH . K 6 HOH B 73 373 224 HOH HOH . K 6 HOH B 74 374 2 HOH HOH . K 6 HOH B 75 375 137 HOH HOH . K 6 HOH B 76 376 159 HOH HOH . K 6 HOH B 77 377 212 HOH HOH . K 6 HOH B 78 378 104 HOH HOH . K 6 HOH B 79 379 153 HOH HOH . K 6 HOH B 80 380 149 HOH HOH . K 6 HOH B 81 381 118 HOH HOH . K 6 HOH B 82 382 170 HOH HOH . K 6 HOH B 83 383 140 HOH HOH . K 6 HOH B 84 384 92 HOH HOH . K 6 HOH B 85 385 205 HOH HOH . K 6 HOH B 86 386 98 HOH HOH . K 6 HOH B 87 387 197 HOH HOH . K 6 HOH B 88 388 122 HOH HOH . K 6 HOH B 89 389 145 HOH HOH . K 6 HOH B 90 390 151 HOH HOH . K 6 HOH B 91 391 187 HOH HOH . K 6 HOH B 92 392 211 HOH HOH . K 6 HOH B 93 393 58 HOH HOH . K 6 HOH B 94 394 181 HOH HOH . K 6 HOH B 95 395 115 HOH HOH . K 6 HOH B 96 396 117 HOH HOH . K 6 HOH B 97 397 223 HOH HOH . K 6 HOH B 98 398 126 HOH HOH . L 6 HOH C 1 1001 68 HOH HOH . L 6 HOH C 2 1002 72 HOH HOH . L 6 HOH C 3 1003 143 HOH HOH . L 6 HOH C 4 1004 176 HOH HOH . L 6 HOH C 5 1005 158 HOH HOH . L 6 HOH C 6 1006 105 HOH HOH . L 6 HOH C 7 1007 130 HOH HOH . L 6 HOH C 8 1008 97 HOH HOH . L 6 HOH C 9 1009 99 HOH HOH . L 6 HOH C 10 1010 175 HOH HOH . L 6 HOH C 11 1011 59 HOH HOH . L 6 HOH C 12 1012 188 HOH HOH . L 6 HOH C 13 1013 52 HOH HOH . L 6 HOH C 14 1014 218 HOH HOH . L 6 HOH C 15 1015 84 HOH HOH . L 6 HOH C 16 1016 3 HOH HOH . L 6 HOH C 17 1017 213 HOH HOH . L 6 HOH C 18 1018 208 HOH HOH . L 6 HOH C 19 1019 195 HOH HOH . L 6 HOH C 20 1020 200 HOH HOH . L 6 HOH C 21 1021 222 HOH HOH . L 6 HOH C 22 1022 87 HOH HOH . L 6 HOH C 23 1023 156 HOH HOH . M 6 HOH D 1 1101 166 HOH HOH . M 6 HOH D 2 1102 127 HOH HOH . M 6 HOH D 3 1103 139 HOH HOH . M 6 HOH D 4 1104 193 HOH HOH . M 6 HOH D 5 1105 164 HOH HOH . M 6 HOH D 6 1106 39 HOH HOH . M 6 HOH D 7 1107 47 HOH HOH . M 6 HOH D 8 1108 167 HOH HOH . M 6 HOH D 9 1109 24 HOH HOH . M 6 HOH D 10 1110 40 HOH HOH . M 6 HOH D 11 1111 210 HOH HOH . M 6 HOH D 12 1112 165 HOH HOH . M 6 HOH D 13 1113 168 HOH HOH . M 6 HOH D 14 1114 102 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGE . . . I 5 -6.578 -37.937 59.607 1 29.23 ? C1 PGE 1001 D 1 HETATM 2 O O1 PGE . . . I 5 -5.764 -38.785 60.408 1 31.94 ? O1 PGE 1001 D 1 HETATM 3 C C2 PGE . . . I 5 -7.873 -37.486 60.284 1 33.04 ? C2 PGE 1001 D 1 HETATM 4 O O2 PGE . . . I 5 -8.715 -38.543 60.714 1 34.32 ? O2 PGE 1001 D 1 HETATM 5 C C3 PGE . . . I 5 -10.082 -38.18 60.788 1 31.71 ? C3 PGE 1001 D 1 HETATM 6 C C4 PGE . . . I 5 -10.71 -38.627 62.106 1 32.98 ? C4 PGE 1001 D 1 HETATM 7 O O4 PGE . . . I 5 -8.725 -41.8 64.571 1 36.06 ? O4 PGE 1001 D 1 HETATM 8 C C6 PGE . . . I 5 -10.087 -41.472 64.325 1 34.03 ? C6 PGE 1001 D 1 HETATM 9 C C5 PGE . . . I 5 -10.24 -39.995 64.004 1 34.21 ? C5 PGE 1001 D 1 HETATM 10 O O3 PGE . . . I 5 -10.009 -39.745 62.618 1 37.44 ? O3 PGE 1001 D 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #