data_8IJB
#
_model_server_result.job_id            ASxJg3bFV5T3vzTj6E5Gow 
_model_server_result.datetime_utc      '2024-10-11 00:27:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ijb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":401}' 
#
_entry.id    8IJB 
#
_exptl.entry_id    8IJB 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              155.131 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '5-methyl-4-oxidanyl-pyrazin-4-ium-2-carboxylic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 11 A CYS 18 1_555 A SG CYS 176 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.912 ? 
disulf ? disulf2 A SG CYS 12 A CYS 19 1_555 A SG CYS 259 A CYS 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf3 A SG CYS 93 A CYS 100 1_555 A SG CYS 170 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf4 E SG CYS 22 S CYS 22 1_555 E SG CYS 96 S CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf5 E SG CYS 160 S CYS 147 1_555 E SG CYS 230 S CYS 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
#
_chem_comp.formula           'C6 H7 N2 O3 1' 
_chem_comp.formula_weight    155.131 
_chem_comp.id                OJX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '5-methyl-4-oxidanyl-pyrazin-4-ium-2-carboxylic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C10 C06 OJX sing 235 n n 
O01 N04 OJX sing 236 n n 
C06 N04 OJX doub 237 n y 
C06 C09 OJX sing 238 n y 
N04 C07 OJX sing 239 n y 
C09 N05 OJX doub 240 n y 
C07 C08 OJX doub 241 n y 
N05 C08 OJX sing 242 n y 
C08 C11 OJX sing 243 n n 
C11 O02 OJX doub 244 n n 
C11 O03 OJX sing 245 n n 
C07 H1 OJX sing 246 n n 
C09 H2 OJX sing 247 n n 
C10 H3 OJX sing 248 n n 
C10 H4 OJX sing 249 n n 
C10 H5 OJX sing 250 n n 
O03 H7 OJX sing 251 n n 
O01 H6 OJX sing 252 n n 
#
_atom_sites.entry_id                     8IJB 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          F 
_pdbx_nonpoly_scheme.entity_id        6 
_pdbx_nonpoly_scheme.mon_id           OJX 
_pdbx_nonpoly_scheme.pdb_strand_id    A 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      401 
_pdbx_nonpoly_scheme.auth_seq_num     0 
_pdbx_nonpoly_scheme.pdb_mon_id       OJX 
_pdbx_nonpoly_scheme.auth_mon_id      ACI 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C06 OJX . . . F 6 144.301 126.257 99.748 1 20 ? C06 OJX 401 A 1 
HETATM 2 C C07 OJX . . . F 6 142.781 125.924 101.535 1 20 ? C07 OJX 401 A 1 
HETATM 3 C C08 OJX . . . F 6 143.114 127.163 102.061 1 20 ? C08 OJX 401 A 1 
HETATM 4 C C09 OJX . . . F 6 144.608 127.483 100.3 1 20 ? C09 OJX 401 A 1 
HETATM 5 C C10 OJX . . . F 6 144.911 125.688 98.475 1 20 ? C10 OJX 401 A 1 
HETATM 6 C C11 OJX . . . F 6 142.432 127.592 103.316 1 20 ? C11 OJX 401 A 1 
HETATM 7 N N04 OJX . . . F 6 143.368 125.485 100.398 1 20 1 N04 OJX 401 A 1 
HETATM 8 N N05 OJX . . . F 6 144.044 127.938 101.416 1 20 ? N05 OJX 401 A 1 
HETATM 9 O O01 OJX . . . F 6 143.051 124.369 99.946 1 20 -1 O01 OJX 401 A 1 
HETATM 10 O O02 OJX . . . F 6 142.647 128.72 103.846 1 20 ? O02 OJX 401 A 1 
HETATM 11 O O03 OJX . . . F 6 141.61 126.789 103.854 1 20 -1 O03 OJX 401 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           11 
#