data_8IJD # _model_server_result.job_id 9Fle7cgqudtAaluWdHtHPg _model_server_result.datetime_utc '2024-10-11 00:27:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ijd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 8IJD # _exptl.entry_id 8IJD _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 386.402 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-[[2,2-dimethyl-3-[3-(5-oxidanylpyridin-2-yl)-1,2,4-oxadiazol-5-yl]propanoyl]amino]cyclohexene-1-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 11 A CYS 18 1_555 A SG CYS 176 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf2 A SG CYS 12 A CYS 19 1_555 A SG CYS 259 A CYS 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? disulf ? disulf3 A SG CYS 93 A CYS 100 1_555 A SG CYS 170 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.845 ? disulf ? disulf4 E SG CYS 22 S CYS 22 1_555 E SG CYS 96 S CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 E SG CYS 160 S CYS 147 1_555 E SG CYS 230 S CYS 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? # _chem_comp.formula 'C19 H22 N4 O5' _chem_comp.formula_weight 386.402 _chem_comp.id FI7 _chem_comp.mon_nstd_flag . _chem_comp.name '2-[[2,2-dimethyl-3-[3-(5-oxidanylpyridin-2-yl)-1,2,4-oxadiazol-5-yl]propanoyl]amino]cyclohexene-1-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C27 C28 FI7 sing 83 n n C27 C26 FI7 sing 84 n n C28 C20 FI7 sing 85 n n C26 C25 FI7 sing 86 n n C01 C02 FI7 sing 87 n n C20 N19 FI7 sing 88 n n C20 C21 FI7 doub 89 n n N19 C17 FI7 sing 90 n n C25 C21 FI7 sing 91 n n C21 C22 FI7 sing 92 n n C17 C02 FI7 sing 93 n n C17 O18 FI7 doub 94 n n C02 C03 FI7 sing 95 n n C02 C04 FI7 sing 96 n n C22 O23 FI7 doub 97 n n C22 O24 FI7 sing 98 n n O16 N15 FI7 sing 99 n y O16 C05 FI7 sing 100 n y C04 C05 FI7 sing 101 n n N15 C07 FI7 doub 102 n y C05 N06 FI7 doub 103 n y C07 N06 FI7 sing 104 n y C07 C08 FI7 sing 105 n n C09 C08 FI7 doub 106 n y C09 C10 FI7 sing 107 n y C08 N14 FI7 sing 108 n y C10 C11 FI7 doub 109 n y N14 C13 FI7 doub 110 n y C11 C13 FI7 sing 111 n y C11 O12 FI7 sing 112 n n C10 H1 FI7 sing 113 n n C13 H2 FI7 sing 114 n n C26 H5 FI7 sing 115 n n C26 H6 FI7 sing 116 n n C28 H7 FI7 sing 117 n n C28 H8 FI7 sing 118 n n C01 H9 FI7 sing 119 n n C01 H10 FI7 sing 120 n n C01 H11 FI7 sing 121 n n C03 H12 FI7 sing 122 n n C03 H13 FI7 sing 123 n n C03 H14 FI7 sing 124 n n C04 H15 FI7 sing 125 n n C04 H16 FI7 sing 126 n n C09 H17 FI7 sing 127 n n C25 H18 FI7 sing 128 n n C25 H19 FI7 sing 129 n n C27 H20 FI7 sing 130 n n C27 H21 FI7 sing 131 n n N19 H22 FI7 sing 132 n n O12 H23 FI7 sing 133 n n O24 H24 FI7 sing 134 n n # _atom_sites.entry_id 8IJD _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id F _pdbx_nonpoly_scheme.entity_id 6 _pdbx_nonpoly_scheme.mon_id FI7 _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 401 _pdbx_nonpoly_scheme.auth_seq_num 401 _pdbx_nonpoly_scheme.pdb_mon_id FI7 _pdbx_nonpoly_scheme.auth_mon_id MK6 _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 FI7 . . . F 6 110.634 118.211 80.377 1 20 ? C10 FI7 401 A 1 HETATM 2 C C13 FI7 . . . F 6 109.548 116.053 80.457 1 20 ? C13 FI7 401 A 1 HETATM 3 C C17 FI7 . . . F 6 103 117.014 74.81 1 20 ? C17 FI7 401 A 1 HETATM 4 C C20 FI7 . . . F 6 100.675 116.001 74.744 1 20 ? C20 FI7 401 A 1 HETATM 5 C C21 FI7 . . . F 6 100.822 114.497 74.431 1 20 ? C21 FI7 401 A 1 HETATM 6 C C22 FI7 . . . F 6 101.257 113.668 75.643 1 20 ? C22 FI7 401 A 1 HETATM 7 C C26 FI7 . . . F 6 98.927 114.812 72.738 1 20 ? C26 FI7 401 A 1 HETATM 8 C C28 FI7 . . . F 6 100.145 116.825 73.57 1 20 ? C28 FI7 401 A 1 HETATM 9 C C01 FI7 . . . F 6 105.59 117.046 74.793 1 20 ? C01 FI7 401 A 1 HETATM 10 C C02 FI7 . . . F 6 104.309 116.937 75.673 1 20 ? C02 FI7 401 A 1 HETATM 11 C C03 FI7 . . . F 6 104.424 115.552 76.34 1 20 ? C03 FI7 401 A 1 HETATM 12 C C04 FI7 . . . F 6 104.268 117.988 76.822 1 20 ? C04 FI7 401 A 1 HETATM 13 C C05 FI7 . . . F 6 105.674 118.212 77.334 1 20 ? C05 FI7 401 A 1 HETATM 14 C C07 FI7 . . . F 6 107.526 118.143 78.243 1 20 ? C07 FI7 401 A 1 HETATM 15 C C08 FI7 . . . F 6 108.617 117.716 79.125 1 20 ? C08 FI7 401 A 1 HETATM 16 C C09 FI7 . . . F 6 109.644 118.607 79.494 1 20 ? C09 FI7 401 A 1 HETATM 17 C C11 FI7 . . . F 6 110.561 116.921 80.872 1 20 ? C11 FI7 401 A 1 HETATM 18 C C25 FI7 . . . F 6 99.484 113.958 73.873 1 20 ? C25 FI7 401 A 1 HETATM 19 C C27 FI7 . . . F 6 98.779 116.281 73.151 1 20 ? C27 FI7 401 A 1 HETATM 20 N N06 FI7 . . . F 6 106.348 117.477 78.112 1 20 ? N06 FI7 401 A 1 HETATM 21 N N14 FI7 . . . F 6 108.606 116.455 79.614 1 20 ? N14 FI7 401 A 1 HETATM 22 N N15 FI7 . . . F 6 107.544 119.221 77.529 1 20 ? N15 FI7 401 A 1 HETATM 23 N N19 FI7 . . . F 6 101.878 116.55 75.363 1 20 ? N19 FI7 401 A 1 HETATM 24 O O12 FI7 . . . F 6 111.467 116.522 81.8 1 20 ? O12 FI7 401 A 1 HETATM 25 O O16 FI7 . . . F 6 106.369 119.266 76.949 1 20 ? O16 FI7 401 A 1 HETATM 26 O O18 FI7 . . . F 6 102.99 117.558 73.699 1 20 ? O18 FI7 401 A 1 HETATM 27 O O23 FI7 . . . F 6 101.689 114.223 76.67 1 20 -1 O23 FI7 401 A 1 HETATM 28 O O24 FI7 . . . F 6 101.237 112.422 75.583 1 20 ? O24 FI7 401 A 1 # _model_server_stats.io_time_ms 100 _model_server_stats.parse_time_ms 101 _model_server_stats.create_model_time_ms 135 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #